Rw2G047080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001309
Physical Location & Seq
Forward (+)
74474611 .. 74485797
11187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047080.1

Sequence Viewer

Length: 1314 bp
ATGATGGTTCGTTGTGTGAATGAAAAGAAAAATGAGTGGCACATTTCACTCCTACCTTCACTCAAATTCAGCTCCAAATTCTACCTCACATGCACTGATTTTTTGCTACATAGCGGCAATGTTCCCTCCTTACTGCCTCAGCTCAAATTAAATGTCTTCAGAATCAGACAACATAACTTCATTTATGTGTTAAATGTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTGTTTTCACTCGCCTGCATCATAAGTTCAATACTACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTGCAGAGGGAGCGATCCAAGAGGAATGGGAGTAATCTTAGAGGAATAAGCAAGCTAGCGGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAAAGGAGGAGACTGTTGGCACAGCTTGTTTCTGGTACTGGTGTCTACAAAACCCTTATCAAGTACTTGGTTGGGGTTCCACAGGTATGCTCTTTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTATTGACGTCTACACCACTGAGTTTGAAAGTTTATTAGGTTTATCAGACTTTCAGCTGCTTATTTCTATATCAATTAATGTAATATGCATTTTTTTCAGTGAGGTTTTTGCGAATTCGCCCTACTTTATTTCAGCAGAGGTTGCTGGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCAGTAAAACACATGGGTTGATTACCATTACCAATCTGAACACCATCTGTGTTTGGATATGGAATAACATTGTGCAGCAGTGGCATATTTGCATTGGTAGAGCCATCAGTGGTACTAACAAATTGTTGAGGGGATTCCAAATTTCACTTTTCTTACCAATATCAAGAGCTTGGAGCAAGGAGAAGGAGGTGACTACCACCACATCATACCTCAATTGGTGTACAACTAGAGAAACTAAGATGAAAGTAGTAGAAGACTCTACTTCTAGTATCAGGGTTTTCATGGTGAGGTTCAAAGAGAGCAAATTGATCCCCGTCCTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

50.2

Weight (kDa)

9.6

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 801
AccI GTMKAC 3 cut(s) 469, 552, 801
AciI CCGC 3 cut(s) 114, 434, 739
AclWI GGATC 2 cut(s) 384, 1291
AcsI RAATTY 4 cut(s) 65, 77, 904, 1128
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 5 cut(s) 544, 572, 683, 1102, 1210
AgsI TTSAA 7 cut(s) 268, 280, 299, 325, 746, 818, 1282
AluBI AGCT 9 cut(s) 72, 142, 232, 302, 430, 532, 776, 847, 1157
AluI AGCT 9 cut(s) 72, 142, 232, 302, 430, 532, 776, 847, 1157
Alw26I GTCTC 3 cut(s) 511, 735, 968
AlwI GGATC 2 cut(s) 384, 1291
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 1 cut(s) 641
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 2 cut(s) 847, 1063
ApoI RAATTY 4 cut(s) 65, 77, 904, 1128
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 641, 642, 671
AsuHPI GGTGA 2 cut(s) 1189, 1285
AsuNHI GCTAGC 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 1 cut(s) 671
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 645
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanII GRGCYC 1 cut(s) 645
BbsI GAAGAC 2 cut(s) 148, 1248
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 834, 1075
BccI CCATC 4 cut(s) 632, 941, 1040, 1100
BcoDI GTCTC 3 cut(s) 511, 735, 968
BfaI CTAG 5 cut(s) 431, 608, 750, 1215, 1254
BfmI CTRYAG 1 cut(s) 377
BisI GCNGC 3 cut(s) 115, 848, 1064
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 3 cut(s) 116, 849, 1065
BmcAI AGTACT 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 641, 642, 671
BmiI GGNNCC 2 cut(s) 585, 643
BmsI GCATC 3 cut(s) 214, 265, 433
BmtI GCTAGC 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 148, 1248
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 645
Bse1I ACTGG 2 cut(s) 550, 990
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 5 cut(s) 152, 210, 242, 303, 801
BseNI ACTGG 2 cut(s) 550, 990
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 2 cut(s) 834, 1075
BsgI GTGCAG 1 cut(s) 1082
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 643
BsiEI CGRYCG 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 732
BsmAI GTCTC 3 cut(s) 511, 735, 968
BsnI GGCC 1 cut(s) 643
BsoBI CYCGRG 1 cut(s) 732
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 645
Bsp1407I TGTACA 2 cut(s) 681, 1208
Bsp143I GATC 4 cut(s) 209, 389, 475, 1296
Bsp1720I GCTNAGC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 3 cut(s) 114, 434, 739
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 5 cut(s) 151, 211, 241, 304, 802
BspLI GGNNCC 2 cut(s) 585, 643
BspMAI CTGCAG 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 2 cut(s) 384, 1291
BspQI GCTCTTC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 124
BsrGI TGTACA 2 cut(s) 681, 1208
BsrI ACTGG 2 cut(s) 550, 990
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 4 cut(s) 209, 389, 475, 1296
BssNAI GTATAC 1 cut(s) 470
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 645
Bst1107I GTATAC 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 241, 331, 522
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 2 cut(s) 681, 1208
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 4 cut(s) 234, 254, 428, 432
BstDEI CTNAG 8 cut(s) 138, 219, 228, 303, 312, 413, 810, 1224
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 212, 392, 478, 1299
BstMAI GTCTC 3 cut(s) 511, 735, 968
BstMBI GATC 4 cut(s) 209, 389, 475, 1296
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 5 cut(s) 233, 385, 661, 932, 1069
BstNSI RCATGY 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 834, 1075
BstV2I GAAGAC 2 cut(s) 148, 1248
BstZ17I GTATAC 1 cut(s) 470
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 5 cut(s) 93, 807, 895, 1073, 1102
Cac8I GCNNGC 4 cut(s) 234, 254, 428, 432
Cfr13I GGNCC 3 cut(s) 641, 642, 671
Csp6I GTAC 5 cut(s) 543, 571, 682, 1101, 1209
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 4 cut(s) 90, 646, 1001, 1270
CviQI GTAC 5 cut(s) 543, 571, 682, 1101, 1209
DdeI CTNAG 8 cut(s) 138, 219, 228, 303, 312, 413, 810, 1224
DpnI GATC 4 cut(s) 211, 391, 477, 1298
DpnII GATC 4 cut(s) 209, 389, 475, 1296
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 904
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 1 cut(s) 881
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 4 cut(s) 93, 649, 1004, 1273
FatI CATG 4 cut(s) 89, 645, 1000, 1269
FblI GTMKAC 3 cut(s) 469, 552, 801
Fnu4HI GCNGC 3 cut(s) 115, 848, 1064
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 3 cut(s) 115, 848, 1064
FspBI CTAG 5 cut(s) 431, 608, 750, 1215, 1254
GluI GCNGC 3 cut(s) 115, 848, 1064
HaeIII GGCC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 4 cut(s) 93, 649, 1004, 1273
HinfI GANTC 5 cut(s) 162, 214, 290, 1122, 1244
HphI GGTGA 2 cut(s) 1189, 1285
Hpy166II GTNNAC 4 cut(s) 470, 553, 802, 1209
Hpy188I TCNGA 5 cut(s) 161, 167, 313, 838, 1026
Hpy188III TCNNGA 4 cut(s) 207, 218, 350, 1152
Hpy8I GTNNAC 4 cut(s) 470, 553, 802, 1209
HpyAV CCTTC 2 cut(s) 66, 1165
HpyCH4III ACNGT 3 cut(s) 241, 331, 522
HpyCH4IV ACGT 3 cut(s) 472, 712, 798
HpyCH4V TGCA 7 cut(s) 93, 256, 379, 879, 941, 1063, 1080
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 385, 661, 932, 1069
HpyF3I CTNAG 8 cut(s) 138, 219, 228, 303, 312, 413, 810, 1224
HpySE526I ACGT 3 cut(s) 472, 712, 798
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 4 cut(s) 93, 649, 1004, 1273
Kzo9I GATC 4 cut(s) 209, 389, 475, 1296
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 3 cut(s) 77, 385, 1161
Lsp1109I GCAGC 2 cut(s) 834, 1075
LweI GCATC 3 cut(s) 214, 265, 433
MaeI CTAG 5 cut(s) 431, 608, 750, 1215, 1254
MaeII ACGT 3 cut(s) 472, 712, 798
MaeIII GTNAC 1 cut(s) 1177
MalI GATC 4 cut(s) 211, 391, 477, 1298
MboI GATC 4 cut(s) 209, 389, 475, 1296
MboII GAAGA 3 cut(s) 148, 662, 1253
MfeI CAATTG 1 cut(s) 1201
MhlI GDGCHC 1 cut(s) 645
MlyI GAGTC 2 cut(s) 223, 1238
Mph1103I ATGCAT 1 cut(s) 881
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 5 cut(s) 149, 191, 758, 867, 1312
MslI CAYNNNNRTG 2 cut(s) 185, 592
MspA1I CMGCKG 1 cut(s) 847
MunI CAATTG 1 cut(s) 1201
MwoI GCNNNNNNNGC 5 cut(s) 233, 385, 661, 932, 1069
NcoI CCATGG 1 cut(s) 645
NdeII GATC 4 cut(s) 209, 389, 475, 1296
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 4 cut(s) 93, 649, 1004, 1273
NlaIV GGNNCC 2 cut(s) 585, 643
NmuCI GTSAC 1 cut(s) 1177
NsiI ATGCAT 1 cut(s) 881
NspI RCATGY 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 162, 290, 1122
PkrI GCNGC 3 cut(s) 116, 849, 1065
Ple19I CGATCG 1 cut(s) 212
PleI GAGTC 2 cut(s) 222, 1238
PpsI GAGTC 2 cut(s) 222, 1238
Ppu21I YACGTR 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 585, 643
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 3 cut(s) 641, 642, 671
PstI CTGCAG 1 cut(s) 381
PvuI CGATCG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 5 cut(s) 544, 572, 683, 1102, 1210
RsaNI GTAC 5 cut(s) 543, 571, 682, 1101, 1209
RseI CAYNNNNRTG 2 cut(s) 185, 592
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 5 cut(s) 149, 191, 758, 867, 1312
SatI GCNGC 3 cut(s) 115, 848, 1064
Sau3AI GATC 4 cut(s) 209, 389, 475, 1296
Sau96I GGNCC 3 cut(s) 641, 642, 671
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 2 cut(s) 223, 1238
SduI GDGCHC 1 cut(s) 645
SfaNI GCATC 3 cut(s) 214, 265, 433
SfcI CTRYAG 1 cut(s) 377
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 2 cut(s) 185, 592
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SsiI CCGC 3 cut(s) 114, 434, 739
SspMI CTAG 5 cut(s) 431, 608, 750, 1215, 1254
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 3 cut(s) 241, 331, 522
TaiI ACGT 3 cut(s) 475, 715, 801
TaqI TCGA 2 cut(s) 208, 212
TatI WGTACW 3 cut(s) 570, 681, 1208
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 162, 290, 1122
Tru1I TTAA 5 cut(s) 149, 191, 758, 867, 1312
Tru9I TTAA 5 cut(s) 149, 191, 758, 867, 1312
TscAI CASTG 5 cut(s) 100, 814, 895, 1073, 1102
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 2 cut(s) 847, 1063
Tsp45I GTSAC 1 cut(s) 1177
TspDTI ATGAA 4 cut(s) 36, 169, 1244, 1258
TspRI CASTG 5 cut(s) 100, 814, 895, 1073, 1102
VpaK11BI GGWCC 1 cut(s) 671
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 4 cut(s) 65, 77, 904, 1128
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 3 cut(s) 469, 552, 801
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 5 cut(s) 431, 608, 750, 1215, 1254
ZraI GACGTC 1 cut(s) 799
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.