Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Reverse (-)

66078341 .. 66079781

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTTCTATCAAGGGTCTGGTGCCGATATCCAGGGCTTTTCTTGCTTCTTATTACAACACATACAAATTTCCACCTCTCTCCGACAAAATCCCATACCTCTCATCGCTCCCCTCACCGCTGATTTGCTCTTCAACTCTTTGGCCATTCCATGTTTATGAGGAAGGAATTACTAAAGCTTGTAGGTTCCCTCTGCGGCATTTGGAAAGCCACATAAAGGGTCCTGCTCCAGTTTCATATCTAGATAGGACTGATATTGTTGATGAAGCAATTACATTCTTTTGCGCTAATGTCTTCTTTAGAAACTTTGATATCAAGAGCTCGGCTGATAAGCTTCTCATTTATCTGAAATTCTACATTAATGTGGCTTTGAAGATTTCACATTTGTCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

8.99

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	56 - 125	1.2e-20	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	119, 196
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	68, 350
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	135, 373
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	179, 321, 334
AluI	AGCT	3 cut(s)	179, 321, 334
Alw21I	GWGCWC	1 cut(s)	323
AoxI	GGCC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	68, 350
AseI	ATTAAT	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	34
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	24, 188, 222
BmrFI	CCNGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	119, 196
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	24, 188, 222
BspQI	GCTCTTC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	9 cut(s)	5, 38, 145, 179, 210, 321, 326, 334, 368
CviKI_1	RGCY	9 cut(s)	5, 38, 145, 179, 210, 321, 326, 334, 368
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	2 cut(s)	30, 313
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	2 cut(s)	30, 313
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	1 cut(s)	155
FaiI	YATR	6 cut(s)	64, 97, 153, 159, 215, 238
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	2 cut(s)	177, 332
HphI	GGTGA	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	85, 348
Hpy188III	TCNNGA	2 cut(s)	242, 316
HpyAV	CCTTC	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	285
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	114, 232
LpnPI	CCDG	5 cut(s)	5, 19, 46, 237, 243
MaeI	CTAG	1 cut(s)	242
MboII	GAAGA	3 cut(s)	123, 286, 385
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	4 cut(s)	68, 168, 270, 350
MluNI	TGGCCA	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	87, 110, 124, 154, 201
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	2 cut(s)	156, 362
Msp20I	TGGCCA	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	24, 188, 222
NmeAIII	GCCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	24, 188, 222
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	156, 362
SacI	GAGCTC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	6 cut(s)	79, 102, 181, 188, 323, 336
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	156, 362
Sse9I	AATT	4 cut(s)	68, 168, 270, 350
SsiI	CCGC	2 cut(s)	119, 196
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	32
TasI	AATT	4 cut(s)	68, 168, 270, 350
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	225, 279
TspGWI	ACGGA	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	221
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	2 cut(s)	68, 350
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.