RLG00000002838

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001309
Physical Location & Seq
Reverse (-)
40493847 .. 40503481
9635 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002838

Sequence Viewer

Length: 456 bp
ATGCTCAACTCCGACCTGGCCTGCATGCTGGAGTCCATACCTGAAAAACATATATTACTCAAAGGATTCTCTAATCGTAACTCCTCTCCTTTTCTCCTTGTTGACAACGACCTGAATCAAAACAAACCCAACGAGATCGAGGCGGTTCCCATTGCCAATGGCTTCTTCCATGGAGGGTCTGGCGCCCATGACCAGGCTTTTCTCACTTCTTATTACGACACCTACAAGTTCGCTCCTCTCACCGACGACATCCCCCGCCTCTCCTCAGAGATTCGCTCCCTCACCGCCGATTTGCTCTCCAACTCTCCGGCCACTCCAGGAGAAGAGAGATTAGTAGTGAATGAACTAGAGAGTCCACTGCCGCATAAAGTGGATGAGAGTATGTGGAAGAATCGGGAGCATATGGAAGACATAGTCTTTTTAGTTGATAGATCTCATTGGTCTCGATCGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

4.91

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 4 cut(s) 143, 256, 285, 362
AcoI YGGCCR 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 193
AjnI CCWGG 3 cut(s) 15, 192, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
Alw26I GTCTC 1 cut(s) 447
AoxI GGCC 2 cut(s) 18, 309
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 232, 274
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 414
BciT130I CCWGG 3 cut(s) 17, 194, 318
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 186
BglII AGATCT 1 cut(s) 431
BisI GCNGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 363
Bme1390I CCNGG 3 cut(s) 17, 194, 318
BmiI GGNNCC 2 cut(s) 147, 184
BmrFI CCNGG 3 cut(s) 17, 194, 318
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 2 cut(s) 50, 300
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 17, 194, 318
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 249, 379
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 3 cut(s) 73, 225, 253
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 20, 311
BshNI GGYRCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 449
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 2 cut(s) 20, 311
Bso31I GGTCTC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 135, 431, 446
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 4 cut(s) 143, 256, 285, 362
BspANI GGCC 2 cut(s) 20, 311
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 147, 184
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 135, 431, 446
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 3 cut(s) 17, 194, 318
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 22, 26
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 249, 379
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 138, 434, 449
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 135, 431, 446
BstMCI CGRYCG 1 cut(s) 449
BstNI CCWGG 3 cut(s) 17, 194, 318
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 15, 192, 316
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 2 cut(s) 20, 311
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 249, 379
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 22, 26
CfoI GCGC 1 cut(s) 185
CviAII CATG 3 cut(s) 25, 170, 188
CviJI RGCY 4 cut(s) 20, 162, 197, 311
CviKI_1 RGCY 4 cut(s) 20, 162, 197, 311
DdeI CTNAG 1 cut(s) 265
DinI GGCGCC 1 cut(s) 184
DpnI GATC 3 cut(s) 137, 433, 448
DpnII GATC 3 cut(s) 135, 431, 446
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 447
EcoRII CCWGG 3 cut(s) 15, 192, 316
EcoT14I CCWWGG 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 3 cut(s) 28, 173, 191
FatI CATG 3 cut(s) 24, 169, 187
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 362
FokI GGATG 2 cut(s) 236, 386
Fsp4HI GCNGC 1 cut(s) 362
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 362
GsuI CTGGAG 2 cut(s) 50, 300
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 20, 311
HapII CCGG 1 cut(s) 308
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 28, 173, 191
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 6 cut(s) 32, 66, 115, 271, 352, 391
HpaII CCGG 1 cut(s) 308
HphI GGTGA 2 cut(s) 232, 274
Hpy166II GTNNAC 2 cut(s) 103, 356
Hpy188I TCNGA 2 cut(s) 13, 268
Hpy188III TCNNGA 2 cut(s) 395, 444
Hpy8I GTNNAC 2 cut(s) 103, 356
Hpy99I CGWCG 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 28, 173, 191
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 3 cut(s) 135, 431, 446
LmnI GCTCC 3 cut(s) 238, 281, 397
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 137, 433, 448
MboI GATC 3 cut(s) 135, 431, 446
MboII GAAGA 4 cut(s) 157, 335, 400, 419
MflI RGATCY 1 cut(s) 431
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 2 cut(s) 41, 361
MmeI TCCRAC 2 cut(s) 36, 324
MnlI CCTC 7 cut(s) 94, 133, 167, 246, 269, 274, 290
MseI TTAA 1 cut(s) 454
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 3 cut(s) 17, 194, 318
MvaI CCWGG 3 cut(s) 17, 194, 318
NarI GGCGCC 1 cut(s) 183
NcoI CCATGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 402
NdeII GATC 3 cut(s) 135, 431, 446
NlaIII CATG 3 cut(s) 28, 173, 191
NlaIV GGNNCC 2 cut(s) 147, 184
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PfeI GAWTC 4 cut(s) 66, 115, 271, 391
PflFI GACNNNGTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 363
Ple19I CGATCG 1 cut(s) 449
PleI GAGTC 2 cut(s) 40, 360
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 2 cut(s) 40, 360
Psp6I CCWGG 3 cut(s) 15, 192, 316
PspGI CCWGG 3 cut(s) 15, 192, 316
PspN4I GGNNCC 2 cut(s) 147, 184
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 413
PvuI CGATCG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 1 cut(s) 362
Sau3AI GATC 3 cut(s) 135, 431, 446
SchI GAGTC 2 cut(s) 41, 361
ScrFI CCNGG 3 cut(s) 17, 194, 318
SetI ASST 4 cut(s) 18, 43, 114, 224
SfoI GGCGCC 1 cut(s) 184
SphI GCATGC 1 cut(s) 28
SsiI CCGC 4 cut(s) 143, 256, 285, 362
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 15, 192, 316
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 2 cut(s) 138, 445
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 4 cut(s) 66, 115, 271, 391
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 363
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 363
Tth111I GACNNNGTC 1 cut(s) 413
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.