Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

17789683 .. 17790226

Gene Structure 544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCTTCCACAGAGGGTCTGGTGCCCATGACCAGGGCTTTTCTCACTTCTTATTATGACACCTACAAATTCCTTCCTCTCTCCGATGACATCCCCCGCCTCTCCTTCGAGATTCAATCCCTTACCGCCGATTTGCTCTCCAACTCTTCAGCCACTCCAGGAGAAGAGAGATTAGTAGTGGATGAACTAGAGAGTCCTCTGCCGCATAAAGTGGATGAGAGTATGTGGAAGAATCGGGAGCATATGGAAGACGTAGTCCTTTTACTTGATAGGCCTCATTGGCCTCAATCGGTGAGCATTGATGTGAATGTTAAACAGCTGGTGTTACCTTACATATTTTTGTTTCTTATTTTTGGTGGTATGAGCAGCTTTAAGAGCCTTCGAGTCCCGAGGATGCTCAGCTTGCTACTGTTTTCACTTGCCTGCATCATAAGTTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.82

Weight (kDa)

4.94

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	3 cut(s)	100, 129, 206
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	35, 160
AluBI	AGCT	3 cut(s)	322, 372, 405
AluI	AGCT	3 cut(s)	322, 372, 405
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	275, 284
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	381
BciT130I	CCWGG	2 cut(s)	37, 162
BfaI	CTAG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	206, 370
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	2 cut(s)	207, 371
Bme1390I	CCNGG	2 cut(s)	37, 162
BmeT110I	CYCGRG	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	37, 162
BmsI	GCATC	2 cut(s)	387, 438
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	36, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	37, 162
BseDI	CCNNGG	2 cut(s)	36, 392
BseGI	GGATG	4 cut(s)	93, 190, 223, 402
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	2 cut(s)	277, 286
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	277, 286
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	401
BspACI	CCGC	3 cut(s)	100, 129, 206
BspANI	GGCC	2 cut(s)	277, 286
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	36, 392
Bst2UI	CCWGG	2 cut(s)	37, 162
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	2 cut(s)	154, 162
BstC8I	GCNNGC	2 cut(s)	407, 427
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	4 cut(s)	93, 190, 223, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 378, 406
BstNI	CCWGG	2 cut(s)	37, 162
BstSCI	CCNGG	2 cut(s)	35, 160
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	277, 286
BtsCI	GGATG	4 cut(s)	93, 190, 223, 402
Cac8I	GCNNGC	2 cut(s)	407, 427
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	9 cut(s)	5, 41, 155, 277, 286, 322, 372, 381, 405
CviKI_1	RGCY	9 cut(s)	5, 41, 155, 277, 286, 322, 372, 381, 405
DdeI	CTNAG	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	154, 162
EarI	CTCTTC	2 cut(s)	154, 162
Eco147I	AGGCCT	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	35, 160
FaeI	CATG	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	206, 370
FokI	GGATG	4 cut(s)	80, 197, 230, 409
Fsp4HI	GCNGC	2 cut(s)	206, 370
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	206, 370
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	277, 286
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	4 cut(s)	115, 196, 235, 387
HphI	GGTGA	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	112, 239, 391
HpyAV	CCTTC	3 cut(s)	86, 118, 392
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 378, 406
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	8, 22, 49, 147, 174, 308, 439
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	387, 438
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	327
MboII	GAAGA	4 cut(s)	141, 179, 244, 263
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	205, 396
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	10, 90, 113, 210, 288, 297, 387
MseI	TTAA	3 cut(s)	315, 375, 440
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	37, 162
MvaI	CCWGG	2 cut(s)	37, 162
MwoI	GCNNNNNNNGC	3 cut(s)	283, 378, 406
NdeI	CATATG	1 cut(s)	246
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	115, 235
PflFI	GACNNNGTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	207, 371
PleI	GAGTC	2 cut(s)	204, 395
PpsI	GAGTC	2 cut(s)	204, 395
Psp6I	CCWGG	2 cut(s)	35, 160
PspGI	CCWGG	2 cut(s)	35, 160
PspN4I	GGNNCC	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	315, 375, 440
SatI	GCNGC	2 cut(s)	206, 370
SchI	GAGTC	2 cut(s)	205, 396
ScrFI	CCNGG	2 cut(s)	37, 162
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	68, 258, 324, 334, 374, 407
SfaNI	GCATC	2 cut(s)	387, 438
SfiI	GGCCNNNNNGGCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	100, 129, 206
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	35, 160
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	111, 385
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	115, 235
Tru1I	TTAA	3 cut(s)	315, 375, 440
Tru9I	TTAA	3 cut(s)	315, 375, 440
TseI	GCWGC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.