Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

2809945 .. 2814553

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGGCTTCTTGGGTGCTCTTACCGGTTGCTCCGGTAACCAGTCGATGCCTGGTGGCTCCGGTGAGGTCCCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGAGACAAATGTGTCTGACATGAGTGTAAATGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAACACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGCAGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATATCTACGAGTCAAGGCCTTTCATTGGTGGAAAAGTAGGCTCTTTTGTTGATAAACGTGGAAATCACATTGAAATGGGACTCCACGTATTCTTTGGTTGTTACAGTAACCTTTTCCGATTAATGAAAAAGGTGGGTGCAGAAGAAAATCTACTTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGAGAACTTGATTTTCGATTTCCAATTGGAGCCCCCATACATGGGATTCTTGCGTTTTTATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATGCATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGATGGAGCATTGAGTGATGTGCGGAATTTGGATAGCATAAGCTTCTCAGATTGGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGATCCTGTTGCGTACGCTCTTGGGTTCATTGACTGTGACAACATCAGCGCTCGTTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCCTGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATCAGACAGTATATCATTGACAAGGGGGGAAGGTTTCATCTTAGGTGGGGATGTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCAGGCCTTGCCATGTCTAAGGCTACTAATAAGCAAACTGTGAAAGCAGATGCCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCCCAGTGGAGGGAATGGGATTTTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGATGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGACAATCTTCTCTATACTCCCGATGCCGATTTTTCATGCTTTGCTGATCTAGCACTTGCTTCTCCAGAAGACTACTACATTGAAGGACAAGGTTCACTCCTGCAATGTGTGTTGACACCAGGTGATCCTTACATGCCTCTACCAAACGAAGAAATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGCAAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTATATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACGCCAGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATAGATAGCATGGAAGGGGCAACTTTATCTGGCAGACGAGCTTCTGCCTATATATGCAATGCTGGGGAAGAGTTGGTGGAATTACGAAAGAAACTTGCATCCCAAGAGGGGAATACAAAAGCTGCTAACACTACTGATGAGCTGAGTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:0098573 GO:0098588 GO:0098805 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

569

Amino Acids

62.79

Weight (kDa)

6.3

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	64 - 99	5.6e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	67 - 132	1.1e-13	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	72 - 536	4e-76	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	2 cut(s)	634, 1529
AclWI	GGATC	9 cut(s)	255, 435, 602, 707, 720, 1173, 1325, 1475, 1540
AcsI	RAATTY	2 cut(s)	637, 1516
AcyI	GRCGYC	1 cut(s)	1505
AdeI	CACNNNGTG	1 cut(s)	1328
AfaI	GTAC	2 cut(s)	725, 1128
AfeI	AGCGCT	1 cut(s)	760
AfiI	CCNNNNNNNGG	7 cut(s)	262, 290, 506, 507, 1068, 1069, 1662
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	338, 1087, 1172, 1189, 1289
AhlI	ACTAGT	1 cut(s)	1102
AjnI	CCWGG	4 cut(s)	48, 1036, 1324, 1471
AjuI	GAANNNNNNNTTGG	4 cut(s)	1181, 1213, 1370, 1402
AluBI	AGCT	9 cut(s)	187, 209, 233, 241, 654, 1196, 1595, 1676, 1696
AluI	AGCT	9 cut(s)	187, 209, 233, 241, 654, 1196, 1595, 1676, 1696
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	101, 105
AlwI	GGATC	9 cut(s)	255, 435, 602, 707, 720, 1173, 1325, 1475, 1540
Ama87I	CYCGRG	1 cut(s)	104
Aor51HI	AGCGCT	1 cut(s)	760
AoxI	GGCC	4 cut(s)	179, 253, 281, 964
ApeKI	GCWGC	2 cut(s)	1022, 1676
ApoI	RAATTY	2 cut(s)	637, 1516
AseI	ATTAAT	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	1517
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	5 cut(s)	66, 75, 179, 857, 1469
AsuHPI	GGTGA	2 cut(s)	73, 1340
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	66, 75, 857, 1469
BamHI	GGATCC	1 cut(s)	712
BanII	GRGCYC	2 cut(s)	499, 601
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BauI	CACGAG	1 cut(s)	691
BbsI	GAAGAC	2 cut(s)	1281, 1508
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	1034, 1663
BccI	CCATC	6 cut(s)	92, 608, 869, 938, 1136, 1408
BciT130I	CCWGG	4 cut(s)	50, 1038, 1326, 1473
BciVI	GTATCC	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	101, 105
BcuI	ACTAGT	1 cut(s)	1102
BfaI	CTAG	2 cut(s)	1103, 1256
BfoI	RGCGCY	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	2 cut(s)	1023, 1677
BlsI	GCNGC	2 cut(s)	1024, 1678
Bme1390I	CCNGG	4 cut(s)	50, 1038, 1326, 1473
Bme18I	GGWCC	4 cut(s)	66, 75, 857, 1469
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	5 cut(s)	66, 75, 179, 857, 1469
BmiI	GGNNCC	5 cut(s)	57, 68, 496, 714, 859
BmrFI	CCNGG	4 cut(s)	50, 1038, 1326, 1473
BmrI	ACTGGG	1 cut(s)	1057
BmsI	GCATC	6 cut(s)	35, 818, 1000, 1149, 1219, 1661
BmuI	ACTGGG	1 cut(s)	1057
BpiI	GAAGAC	2 cut(s)	1281, 1508
BpmI	CTGGAG	1 cut(s)	1254
BpuEI	CTTGAG	2 cut(s)	812, 871
BsaAI	YACGTR	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	1505
BsaJI	CCNNGG	1 cut(s)	804
BsaWI	WCCGGW	3 cut(s)	22, 31, 58
BsaXI	ACNNNNNCTCC	2 cut(s)	1101, 1131
Bsc4I	CCNNNNNNNGG	7 cut(s)	262, 290, 506, 507, 1068, 1069, 1662
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	39, 1063, 1508
Bse3DI	GCAATG	2 cut(s)	1316, 1618
BseBI	CCWGG	4 cut(s)	50, 1038, 1326, 1473
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	3 cut(s)	809, 917, 1652
BseLI	CCNNNNNNNGG	7 cut(s)	262, 290, 506, 507, 1068, 1069, 1662
BseMI	GCAATG	2 cut(s)	1316, 1618
BseMII	CTCAG	2 cut(s)	672, 1688
BseNI	ACTGG	3 cut(s)	39, 1063, 1508
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	1034, 1663
BseYI	CCCAGC	3 cut(s)	209, 1146, 1616
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	181, 255, 283, 966
BshTI	ACCGGT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	23, 32, 59
BsiWI	CGTACG	1 cut(s)	723
BslFI	GGGAC	3 cut(s)	52, 357, 1045
BslI	CCNNNNNNNGG	7 cut(s)	262, 290, 506, 507, 1068, 1069, 1662
BsmAI	GTCTC	2 cut(s)	101, 105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	3 cut(s)	52, 357, 1045
BsnI	GGCC	4 cut(s)	181, 255, 283, 966
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	18, 499, 601
Bsp1407I	TGTACA	1 cut(s)	1126
BspACI	CCGC	2 cut(s)	634, 1529
BspANI	GGCC	4 cut(s)	181, 255, 283, 966
BspCNI	CTCAG	2 cut(s)	671, 1689
BspLI	GGNNCC	5 cut(s)	57, 68, 496, 714, 859
BspPI	GGATC	9 cut(s)	255, 435, 602, 707, 720, 1173, 1325, 1475, 1540
BsrDI	GCAATG	2 cut(s)	1316, 1618
BsrFI	RCCGGY	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	1126
BsrI	ACTGG	3 cut(s)	39, 1063, 1508
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	1505
BssSI	CACGAG	1 cut(s)	691
Bst2BI	CACGAG	1 cut(s)	691
Bst2UI	CCWGG	4 cut(s)	50, 1038, 1326, 1473
Bst4CI	ACNGT	6 cut(s)	371, 746, 870, 1000, 1126, 1176
Bst6I	CTCTTC	1 cut(s)	1617
BstACI	GRCGYC	1 cut(s)	1505
BstAPI	GCANNNNNTGC	2 cut(s)	563, 968
BstAUI	TGTACA	1 cut(s)	1126
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	6 cut(s)	216, 220, 824, 964, 1027, 1194
BstDEI	CTNAG	7 cut(s)	658, 798, 902, 978, 1133, 1414, 1697
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	809, 917, 1652
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstMAI	GTCTC	2 cut(s)	101, 105
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	7 cut(s)	215, 563, 823, 968, 1019, 1189, 1256
BstNI	CCWGG	4 cut(s)	50, 1038, 1326, 1473
BstNSI	RCATGY	4 cut(s)	226, 826, 1029, 1342
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	48, 1036, 1324, 1471
BstV1I	GCAGC	2 cut(s)	1034, 1663
BstV2I	GAAGAC	2 cut(s)	1281, 1508
BstX2I	RGATCY	3 cut(s)	712, 1165, 1480
BstYI	RGATCY	3 cut(s)	712, 1165, 1480
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	4 cut(s)	181, 255, 283, 966
BtgZI	GCGATG	2 cut(s)	1044, 1389
BtsCI	GGATG	3 cut(s)	809, 917, 1652
BtsIMutI	CAGTG	3 cut(s)	1070, 1122, 1515
Cac8I	GCNNGC	6 cut(s)	216, 220, 824, 964, 1027, 1194
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	5 cut(s)	66, 75, 179, 857, 1469
CseI	GACGC	1 cut(s)	1513
CsiI	ACCWGGT	2 cut(s)	1324, 1471
Csp6I	GTAC	2 cut(s)	724, 1127
CspAI	ACCGGT	1 cut(s)	22
CviQI	GTAC	2 cut(s)	724, 1127
DdeI	CTNAG	7 cut(s)	658, 798, 902, 978, 1133, 1414, 1697
DraIII	CACNNNGTG	1 cut(s)	1328
DrdI	GACNNNNNNGTC	1 cut(s)	115
DseDI	GACNNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	1617
EarI	CTCTTC	1 cut(s)	1617
Eco147I	AGGCCT	2 cut(s)	283, 966
Eco24I	GRGCYC	2 cut(s)	499, 601
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	4 cut(s)	66, 75, 857, 1469
Eco47III	AGCGCT	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	34
EcoO109I	RGGNCCY	3 cut(s)	66, 75, 1469
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	4 cut(s)	48, 1036, 1324, 1471
EcoRV	GATATC	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	2 cut(s)	499, 601
Esp3I	CGTCTC	1 cut(s)	105
FaqI	GGGAC	3 cut(s)	52, 357, 1045
FauI	CCCGC	1 cut(s)	1522
Fnu4HI	GCNGC	2 cut(s)	1023, 1677
FokI	GGATG	3 cut(s)	796, 924, 1639
FriOI	GRGCYC	2 cut(s)	499, 601
Fsp4HI	GCNGC	2 cut(s)	1023, 1677
FspBI	CTAG	2 cut(s)	1103, 1256
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	1023, 1677
GsaI	CCCAGC	3 cut(s)	213, 1150, 1620
GsuI	CTGGAG	1 cut(s)	1254
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	4 cut(s)	181, 255, 283, 966
HapII	CCGG	3 cut(s)	23, 32, 59
HgaI	GACGC	1 cut(s)	1513
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	1505
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	2 cut(s)	228, 1320
HindII	GTYRAC	2 cut(s)	228, 1320
HindIII	AAGCTT	2 cut(s)	652, 1194
HinfI	GANTC	6 cut(s)	275, 345, 511, 583, 1041, 1699
HpaII	CCGG	3 cut(s)	23, 32, 59
HphI	GGTGA	2 cut(s)	73, 1340
Hpy166II	GTNNAC	5 cut(s)	228, 847, 857, 1301, 1320
Hpy188I	TCNGA	6 cut(s)	121, 383, 537, 661, 866, 1500
Hpy8I	GTNNAC	5 cut(s)	228, 847, 857, 1301, 1320
HpyAV	CCTTC	5 cut(s)	418, 885, 1283, 1460, 1562
HpyCH4III	ACNGT	6 cut(s)	371, 746, 870, 1000, 1126, 1176
HpyCH4IV	ACGT	3 cut(s)	322, 351, 785
HpyCH4V	TGCA	9 cut(s)	218, 404, 566, 578, 1022, 1162, 1309, 1611, 1652
HpyF10VI	GCNNNNNNNGC	7 cut(s)	215, 563, 823, 968, 1019, 1189, 1256
HpyF3I	CTNAG	7 cut(s)	658, 798, 902, 978, 1133, 1414, 1697
HpySE526I	ACGT	3 cut(s)	322, 351, 785
Hsp92I	GRCGYC	1 cut(s)	1505
HspAI	GCGC	1 cut(s)	759
LmnI	GCTCC	6 cut(s)	34, 61, 142, 206, 494, 617
Lsp1109I	GCAGC	2 cut(s)	1034, 1663
LweI	GCATC	6 cut(s)	35, 818, 1000, 1149, 1219, 1661
MabI	ACCWGGT	2 cut(s)	1324, 1471
MaeI	CTAG	2 cut(s)	1103, 1256
MaeII	ACGT	3 cut(s)	322, 351, 785
MaeIII	GTNAC	8 cut(s)	34, 365, 371, 746, 1120, 1150, 1372, 1420
MboII	GAAGA	7 cut(s)	419, 1205, 1286, 1367, 1513, 1513, 1634
MfeI	CAATTG	2 cut(s)	489, 1184
MflI	RGATCY	3 cut(s)	712, 1165, 1480
MhlI	GDGCHC	3 cut(s)	18, 499, 601
MluCI	AATT	8 cut(s)	462, 489, 637, 1184, 1359, 1443, 1516, 1634
MlyI	GAGTC	4 cut(s)	284, 339, 592, 1708
MmeI	TCCRAC	1 cut(s)	1087
Mph1103I	ATGCAT	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	1517
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	2 cut(s)	338, 1157
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	23, 32, 59
MspR9I	CCNGG	4 cut(s)	50, 1038, 1326, 1473
MunI	CAATTG	2 cut(s)	489, 1184
MvaI	CCWGG	4 cut(s)	50, 1038, 1326, 1473
MwoI	GCNNNNNNNGC	7 cut(s)	215, 563, 823, 968, 1019, 1189, 1256
NlaIV	GGNNCC	5 cut(s)	57, 68, 496, 714, 859
NmuCI	GTSAC	5 cut(s)	746, 1120, 1150, 1372, 1420
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	4 cut(s)	226, 826, 1029, 1342
PaeI	GCATGC	2 cut(s)	826, 1029
PaeR7I	CTCGAG	1 cut(s)	104
PceI	AGGCCT	2 cut(s)	283, 966
PdmI	GAANNNNTTC	1 cut(s)	1517
PfeI	GAWTC	2 cut(s)	511, 1041
Pfl23II	CGTACG	1 cut(s)	723
PflMI	CCANNNNNTGG	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	1024, 1678
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	4 cut(s)	283, 339, 591, 1707
PpsI	GAGTC	4 cut(s)	283, 339, 591, 1707
Ppu21I	YACGTR	1 cut(s)	352
PpuMI	RGGWCCY	3 cut(s)	66, 75, 1469
PshBI	ATTAAT	1 cut(s)	386
Psp5II	RGGWCCY	3 cut(s)	66, 75, 1469
Psp6I	CCWGG	4 cut(s)	48, 1036, 1324, 1471
PspEI	GGTNACC	1 cut(s)	34
PspFI	CCCAGC	3 cut(s)	209, 1146, 1616
PspGI	CCWGG	4 cut(s)	48, 1036, 1324, 1471
PspLI	CGTACG	1 cut(s)	723
PspN4I	GGNNCC	5 cut(s)	57, 68, 496, 714, 859
PspPI	GGNCC	5 cut(s)	66, 75, 179, 857, 1469
PspPPI	RGGWCCY	3 cut(s)	66, 75, 1469
PsuI	RGATCY	3 cut(s)	712, 1165, 1480
PvuI	CGATCG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	725, 1128
RsaNI	GTAC	2 cut(s)	724, 1127
RseI	CAYNNNNRTG	2 cut(s)	338, 1157
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	2 cut(s)	1023, 1677
Sau96I	GGNCC	5 cut(s)	66, 75, 179, 857, 1469
SchI	GAGTC	4 cut(s)	284, 339, 592, 1708
ScrFI	CCNGG	4 cut(s)	50, 1038, 1326, 1473
SduI	GDGCHC	3 cut(s)	18, 499, 601
SexAI	ACCWGGT	2 cut(s)	1324, 1471
SfaNI	GCATC	6 cut(s)	35, 818, 1000, 1149, 1219, 1661
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	4 cut(s)	66, 75, 857, 1469
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	338, 1157
SmlI	CTYRAG	3 cut(s)	104, 827, 850
SmoI	CTYRAG	3 cut(s)	104, 827, 850
SpeI	ACTAGT	1 cut(s)	1102
SphI	GCATGC	2 cut(s)	826, 1029
Sse9I	AATT	8 cut(s)	462, 489, 637, 1184, 1359, 1443, 1516, 1634
SseBI	AGGCCT	2 cut(s)	283, 966
SsiI	CCGC	2 cut(s)	634, 1529
SspMI	CTAG	2 cut(s)	1103, 1256
StuI	AGGCCT	2 cut(s)	283, 966
StyD4I	CCNGG	4 cut(s)	48, 1036, 1324, 1471
TaaI	ACNGT	6 cut(s)	371, 746, 870, 1000, 1126, 1176
TaiI	ACGT	3 cut(s)	325, 354, 788
TaqI	TCGA	5 cut(s)	43, 94, 105, 175, 481
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	8 cut(s)	462, 489, 637, 1184, 1359, 1443, 1516, 1634
TatI	WGTACW	1 cut(s)	1126
TfiI	GAWTC	2 cut(s)	511, 1041
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	3 cut(s)	1070, 1129, 1515
TseFI	GTSAC	5 cut(s)	746, 1120, 1150, 1372, 1420
TseI	GCWGC	2 cut(s)	1022, 1676
Tsp45I	GTSAC	5 cut(s)	746, 1120, 1150, 1372, 1420
TspDTI	ATGAA	7 cut(s)	277, 404, 658, 727, 887, 1113, 1230
TspGWI	ACGGA	1 cut(s)	1047
TspRI	CASTG	3 cut(s)	1070, 1129, 1515
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	4 cut(s)	66, 75, 857, 1469
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	2 cut(s)	637, 1516
XceI	RCATGY	4 cut(s)	226, 826, 1029, 1342
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 356
XhoI	CTCGAG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	1517
XspI	CTAG	2 cut(s)	1103, 1256
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.