RchiOBHm_Chr4g0423451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001309
Physical Location & Seq
Reverse (-)
49070701 .. 49073162
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39281

Sequence Viewer

Length: 720 bp
ATGACCTTGAAGTCATTGGAATCGATTCAAGCTAAGAACTCTGAGTGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGAGAGAGGCTTATTAGACTGCAGAGGGAGCGATCCGAGAGGAATGTGAGTGATCTGAGAGGAATAAGCAAGCTAGCGGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTGGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCACAGGTTTTACTAGATTTTGTTCACCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAACATTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTTTTTGCGAATTCGCCCTTCTTTATTTCAGCAGAGGTTGCTAGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGTAAAACACATGGGGTTTCTCTATCTATGGACTCGATAAATTCGTATATTGCTTGTTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCGTTCCTAAATTTCATTTAATTACTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.08

Weight (kDa)

8.86

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccI GTMKAC 2 cut(s) 199, 282
AciI CCGC 2 cut(s) 164, 460
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 3 cut(s) 502, 628, 698
AfaI GTAC 2 cut(s) 302, 404
AgsI TTSAA 4 cut(s) 10, 29, 55, 467
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 3 cut(s) 32, 160, 262
AluI AGCT 3 cut(s) 32, 160, 262
Alw26I GTCTC 3 cut(s) 241, 456, 566
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 1 cut(s) 362
ApaI GGGCCC 1 cut(s) 366
ApoI RAATTY 3 cut(s) 502, 628, 698
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 362, 363, 392
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 453
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 366
BccI CCATC 2 cut(s) 353, 539
BcoDI GTCTC 3 cut(s) 241, 456, 566
BfaI CTAG 4 cut(s) 161, 329, 471, 534
BfmI CTRYAG 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 362, 363, 392
BmiI GGNNCC 2 cut(s) 315, 364
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 33, 134
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 256, 259
BseSI GKGCMC 1 cut(s) 366
BshFI GGCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 588
BsmAI GTCTC 3 cut(s) 241, 456, 566
BsnI GGCC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 453
Bsp120I GGGCCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 119, 139, 205
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 164, 460
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 34, 135
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 315, 364
BspMAI CTGCAG 1 cut(s) 111
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 587
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 3 cut(s) 119, 139, 205
BssNAI GTATAC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 61, 252
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 158, 162
BstDEI CTNAG 3 cut(s) 33, 42, 143
BstDSI CCRYGG 1 cut(s) 366
BstKTI GATC 3 cut(s) 122, 142, 208
BstMAI GTCTC 3 cut(s) 241, 456, 566
BstMBI GATC 3 cut(s) 119, 139, 205
BstMWI GCNNNNNNNGC 2 cut(s) 115, 530
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 366
BstZ17I GTATAC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 158, 162
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 3 cut(s) 362, 363, 392
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 2 cut(s) 301, 403
CviAII CATG 2 cut(s) 367, 599
CviJI RGCY 7 cut(s) 32, 97, 160, 262, 364, 408, 440
CviKI_1 RGCY 7 cut(s) 32, 97, 160, 262, 364, 408, 440
CviQI GTAC 2 cut(s) 301, 403
DdeI CTNAG 3 cut(s) 33, 42, 143
DpnI GATC 3 cut(s) 121, 141, 207
DpnII GATC 3 cut(s) 119, 139, 205
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 370, 602
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FatI CATG 2 cut(s) 366, 598
FblI GTMKAC 2 cut(s) 199, 282
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 4 cut(s) 161, 329, 471, 534
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 588
Hin1II CATG 2 cut(s) 370, 602
HinfI GANTC 3 cut(s) 20, 25, 620
HpaII CCGG 1 cut(s) 588
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 200, 283, 340
Hpy188I TCNGA 3 cut(s) 43, 124, 144
Hpy188III TCNNGA 2 cut(s) 80, 89
Hpy8I GTNNAC 3 cut(s) 200, 283, 340
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 2 cut(s) 61, 252
HpyCH4IV ACGT 2 cut(s) 202, 433
HpyCH4V TGCA 3 cut(s) 109, 539, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 530
HpyF3I CTNAG 3 cut(s) 33, 42, 143
HpySE526I ACGT 2 cut(s) 202, 433
Hsp92II CATG 2 cut(s) 370, 602
Kzo9I GATC 3 cut(s) 119, 139, 205
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 174, 233, 261, 305, 422, 597, 601
LweI GCATC 1 cut(s) 163
MaeI CTAG 4 cut(s) 161, 329, 471, 534
MaeII ACGT 2 cut(s) 202, 433
MalI GATC 3 cut(s) 121, 141, 207
MboI GATC 3 cut(s) 119, 139, 205
MboII GAAGA 2 cut(s) 383, 686
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 5 cut(s) 476, 502, 628, 698, 708
MlyI GAGTC 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 479, 707
MspI CCGG 1 cut(s) 588
MwoI GCNNNNNNNGC 2 cut(s) 115, 530
NcoI CCATGG 1 cut(s) 366
NdeII GATC 3 cut(s) 119, 139, 205
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 370, 602
NlaIV GGNNCC 2 cut(s) 315, 364
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 20, 25
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Ppu21I YACGTR 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 315, 364
PspOMI GGGCCC 1 cut(s) 362
PspPI GGNCC 3 cut(s) 362, 363, 392
PstI CTGCAG 1 cut(s) 111
RsaI GTAC 2 cut(s) 302, 404
RsaNI GTAC 2 cut(s) 301, 403
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 479, 707
Sau3AI GATC 3 cut(s) 119, 139, 205
Sau96I GGNCC 3 cut(s) 362, 363, 392
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 1 cut(s) 614
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 5 cut(s) 476, 502, 628, 698, 708
SsiI CCGC 2 cut(s) 164, 460
SspMI CTAG 4 cut(s) 161, 329, 471, 534
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 61, 252
TaiI ACGT 2 cut(s) 205, 436
TaqI TCGA 3 cut(s) 23, 88, 623
TasI AATT 5 cut(s) 476, 502, 628, 698, 708
TatI WGTACW 2 cut(s) 300, 402
TfiI GAWTC 2 cut(s) 20, 25
Tru1I TTAA 2 cut(s) 479, 707
Tru9I TTAA 2 cut(s) 479, 707
TspDTI ATGAA 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 3 cut(s) 502, 628, 698
XmiI GTMKAC 2 cut(s) 199, 282
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 4 cut(s) 161, 329, 471, 534
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.