RchiOBHm_Chr2g0142661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001309
Physical Location & Seq
Forward (+)
60254187 .. 60260486
6300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51280

Sequence Viewer

Length: 873 bp
ATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTGCAGAGGGAGCGATCCAAGAGGAATGGGAGTAATTTGAGAGGAATAAGCAAGCTAGCGGAGATTGATTCTATGATTAGTTATGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTAGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCGCAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAAAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTATCTCAGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTGTTGACGTCTACACCACTGAGTTTGAAAGTTTATTAGGTTTATCAGGTATTAATGCTATTTCCTCTGTTGACTTGGTAACATTAGACGTTGATGTTATTATTTATGGTTTGCAATGTTTGCTTCAGGAGAACTGCATTTTGAGAGAACTTGGAAAAAAATTTGAAGAGGGAGGACTGGAGGGGCAGCTGCATGGCATTGAGCATGGCAGCTGCATGGCATTGAGCATGGCAGCATGGAAGTTTGGTTGTTCACTTGTTGTCTTACAATATGTGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGTAAAACACATGGGGTTTCTCTGTTTGTGGACTCGATAAATTTGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCGTTCCTAAATTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.85

Weight (kDa)

8.25

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 247
AccI GTMKAC 3 cut(s) 136, 219, 459
AciI CCGC 3 cut(s) 101, 254, 397
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 3 cut(s) 608, 799, 862
AcuI CTGAAG 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 239, 341
AgsI TTSAA 3 cut(s) 404, 476, 614
AhlI ACTAGT 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AluBI AGCT 5 cut(s) 97, 199, 434, 637, 660
AluI AGCT 5 cut(s) 97, 199, 434, 637, 660
Alw26I GTCTC 2 cut(s) 178, 737
AlwI GGATC 1 cut(s) 51
AoxI GGCC 1 cut(s) 299
ApaI GGGCCC 1 cut(s) 303
ApeKI GCWGC 5 cut(s) 634, 637, 657, 660, 680
ApoI RAATTY 3 cut(s) 608, 799, 862
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AseI ATTAAT 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 299, 300, 329
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 303
BbvI GCAGC 5 cut(s) 624, 646, 647, 669, 692
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 178, 737
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 4 cut(s) 98, 213, 266, 408
BfmI CTRYAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 5 cut(s) 635, 638, 658, 661, 681
BlsI GCNGC 5 cut(s) 636, 639, 659, 662, 682
BmcAI AGTACT 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 3 cut(s) 299, 300, 329
BmiI GGNNCC 2 cut(s) 252, 301
BmtI GCTAGC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 647
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 2 cut(s) 404, 459
BseNI ACTGG 1 cut(s) 630
BseRI GAGGAG 2 cut(s) 193, 196
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 5 cut(s) 624, 646, 647, 669, 692
BshFI GGCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 759
BsmAI GTCTC 2 cut(s) 178, 737
BsnI GGCC 1 cut(s) 301
Bsp120I GGGCCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 56, 142
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 3 cut(s) 101, 254, 397
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 403, 460
BspLI GGNNCC 2 cut(s) 252, 301
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 758
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 630
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 56, 142
BssNAI GTATAC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 2 cut(s) 390, 468
BstDSI CCRYGG 1 cut(s) 303
BstKTI GATC 2 cut(s) 59, 145
BstMAI GTCTC 2 cut(s) 178, 737
BstMBI GATC 2 cut(s) 56, 142
BstMWI GCNNNNNNNGC 3 cut(s) 52, 319, 568
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 5 cut(s) 624, 646, 647, 669, 692
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 95, 99
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 3 cut(s) 299, 300, 329
Csp6I GTAC 2 cut(s) 238, 340
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 7 cut(s) 304, 641, 653, 664, 676, 684, 770
CviJI RGCY 9 cut(s) 34, 97, 199, 301, 345, 377, 434, 637, 660
CviKI_1 RGCY 9 cut(s) 34, 97, 199, 301, 345, 377, 434, 637, 660
CviQI GTAC 2 cut(s) 238, 340
DdeI CTNAG 2 cut(s) 390, 468
DpnI GATC 2 cut(s) 58, 144
DpnII GATC 2 cut(s) 56, 142
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 7 cut(s) 307, 644, 656, 667, 679, 687, 773
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FatI CATG 7 cut(s) 303, 640, 652, 663, 675, 683, 769
FblI GTMKAC 3 cut(s) 136, 219, 459
Fnu4HI GCNGC 5 cut(s) 635, 638, 658, 661, 681
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 5 cut(s) 635, 638, 658, 661, 681
FspBI CTAG 4 cut(s) 98, 213, 266, 408
GluI GCNGC 5 cut(s) 635, 638, 658, 661, 681
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 759
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 7 cut(s) 307, 644, 656, 667, 679, 687, 773
HincII GTYRAC 2 cut(s) 454, 520
HindII GTYRAC 2 cut(s) 454, 520
HinfI GANTC 2 cut(s) 110, 791
HpaII CCGG 1 cut(s) 759
Hpy166II GTNNAC 7 cut(s) 137, 220, 454, 460, 520, 701, 790
Hpy188III TCNNGA 2 cut(s) 17, 575
Hpy8I GTNNAC 7 cut(s) 137, 220, 454, 460, 520, 701, 790
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 4 cut(s) 139, 370, 456, 537
HpyCH4V TGCA 6 cut(s) 46, 562, 585, 640, 663, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 319, 568
HpyF3I CTNAG 2 cut(s) 390, 468
HpySE526I ACGT 4 cut(s) 139, 370, 456, 537
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 7 cut(s) 307, 644, 656, 667, 679, 687, 773
Kzo9I GATC 2 cut(s) 56, 142
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 170, 242, 359, 377, 480, 560, 611, 768, 772
Lsp1109I GCAGC 5 cut(s) 624, 646, 647, 669, 692
MaeI CTAG 4 cut(s) 98, 213, 266, 408
MaeII ACGT 4 cut(s) 139, 370, 456, 537
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 58, 144
MboI GATC 2 cut(s) 56, 142
MboII GAAGA 2 cut(s) 626, 850
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 5 cut(s) 76, 413, 608, 799, 862
MlyI GAGTC 1 cut(s) 785
MseI TTAA 3 cut(s) 416, 501, 871
MspA1I CMGCKG 2 cut(s) 637, 660
MspI CCGG 1 cut(s) 759
MwoI GCNNNNNNNGC 3 cut(s) 52, 319, 568
NcoI CCATGG 1 cut(s) 303
NdeII GATC 2 cut(s) 56, 142
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 7 cut(s) 307, 644, 656, 667, 679, 687, 773
NlaIV GGNNCC 2 cut(s) 252, 301
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 636, 639, 659, 662, 682
PleI GAGTC 1 cut(s) 785
PpsI GAGTC 1 cut(s) 785
Ppu21I YACGTR 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 252, 301
PspOMI GGGCCC 1 cut(s) 299
PspPI GGNCC 3 cut(s) 299, 300, 329
PstI CTGCAG 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 637, 660
RsaI GTAC 2 cut(s) 239, 341
RsaNI GTAC 2 cut(s) 238, 340
SaqAI TTAA 3 cut(s) 416, 501, 871
SatI GCNGC 5 cut(s) 635, 638, 658, 661, 681
Sau3AI GATC 2 cut(s) 56, 142
Sau96I GGNCC 3 cut(s) 299, 300, 329
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 1 cut(s) 785
SduI GDGCHC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 5 cut(s) 76, 413, 608, 799, 862
SsiI CCGC 3 cut(s) 101, 254, 397
SspMI CTAG 4 cut(s) 98, 213, 266, 408
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 4 cut(s) 142, 373, 459, 540
TaqI TCGA 1 cut(s) 794
TasI AATT 5 cut(s) 76, 413, 608, 799, 862
TatI WGTACW 2 cut(s) 237, 339
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 3 cut(s) 416, 501, 871
Tru9I TTAA 3 cut(s) 416, 501, 871
TscAI CASTG 1 cut(s) 472
TseI GCWGC 5 cut(s) 634, 637, 657, 660, 680
TspDTI ATGAA 1 cut(s) 856
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 3 cut(s) 608, 799, 862
XmiI GTMKAC 3 cut(s) 136, 219, 459
XspI CTAG 4 cut(s) 98, 213, 266, 408
ZraI GACGTC 1 cut(s) 457
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.