RLG00000025092

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001309
Physical Location & Seq
Forward (+)
41904506 .. 41909131
4626 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025092

Sequence Viewer

Length: 819 bp
ATGGCTTCCACGGAGGGTCTGGTCCCCATAACCAGGGCTTTTCTCGCTTCTTATTACGACACCTACAATTTCCCTCCTCTCTCCGACGACATCCCCCGCCTCTCCTCCGAGATTCGCTCCCTCACCGCCGATTTTCTCTCCAACTCTCCCGCCGCTCCAGGAGAAGAGAGATTAGTAATGGATGAGTTAGCGAGTCCGCCGCCGCATAAAGTGGATGAGAATATGTGGAAGAATCGGGAGCATATGGAAGAGATAGTCTTTTTACTTGACCGACCTCATTGGCCTCAATCGCTTCAAGAGCCTTCGAGTCCCGAGGATGCTCAGCTTGCTACTGTTTTCACTCGCCTGCATCATAAGTTTAATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAATTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGGGGAAGGCTTATTAGACTGCAGAGGGAGCGATCCGAGAGGAATAAGCAAGCAGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTATCTTGTGGAAACAACAAATGGAGAGGAGAAGACTGTTGGCGCAGCTTGGTTCTGCTACTGGTGTCTACAAAACCCTTCTCATTTTACCTTACAAACGTTACGAGTCTGACCAAGGGAATTTCTGCACATGCGAGGCTGGAAACTACAAACTCGTTTGGGACAATTCATATTCAAGTTTCTTTAAGAAGGTGCTGCGCTATAAGGTAGATTGTATACCTCCAGTTGTTGAAACGGTGCCTCCTGTGACTGAAGTTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

31.43

Weight (kDa)

6.04

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 3 cut(s) 538, 621, 769
AciI CCGC 7 cut(s) 97, 126, 150, 153, 197, 200, 203
AclI AACGTT 1 cut(s) 652
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 2 cut(s) 400, 673
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 7 cut(s) 296, 373, 392, 418, 729, 785, 812
AjnI CCWGG 2 cut(s) 32, 157
AluBI AGCT 3 cut(s) 325, 395, 601
AluI AGCT 3 cut(s) 325, 395, 601
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 598, 748
ApoI RAATTY 2 cut(s) 400, 673
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 598, 753
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 592
BbvI GCAGC 2 cut(s) 610, 735
BciT130I CCWGG 2 cut(s) 34, 159
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 5 cut(s) 153, 200, 203, 599, 749
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 154, 201, 204, 600, 750
Bme1390I CCNGG 2 cut(s) 34, 159
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 24, 792
BmrFI CCNGG 2 cut(s) 34, 159
BmsI GCATC 3 cut(s) 307, 358, 502
BpiI GAAGAC 1 cut(s) 592
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 2 cut(s) 141, 759
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 9, 33, 312, 667
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 619, 776
BseBI CCWGG 2 cut(s) 34, 159
BseDI CCNNGG 4 cut(s) 9, 33, 312, 667
BseGI GGATG 4 cut(s) 90, 187, 220, 322
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 335, 396
BseNI ACTGG 2 cut(s) 619, 776
BseRI GAGGAG 3 cut(s) 66, 94, 595
BseXI GCAGC 2 cut(s) 610, 735
BsgI GTGCAG 1 cut(s) 664
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 790
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 3 cut(s) 8, 294, 728
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 3 cut(s) 8, 294, 728
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 2 cut(s) 482, 544
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 7 cut(s) 97, 126, 150, 153, 197, 200, 203
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 334, 397
BspLI GGNNCC 2 cut(s) 24, 792
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 790
BsrBI CCGCTC 1 cut(s) 155
BsrI ACTGG 2 cut(s) 619, 776
BssECI CCNNGG 4 cut(s) 9, 33, 312, 667
BssMI GATC 2 cut(s) 482, 544
BssNAI GTATAC 2 cut(s) 539, 770
BssT1I CCWWGG 1 cut(s) 667
Bst1107I GTATAC 2 cut(s) 539, 770
Bst2UI CCWGG 2 cut(s) 34, 159
Bst4CI ACNGT 4 cut(s) 334, 424, 591, 790
Bst6I CTCTTC 2 cut(s) 159, 243
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 327, 347, 501
BstDEI CTNAG 3 cut(s) 321, 396, 405
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 90, 187, 220, 322
BstHHI GCGC 2 cut(s) 598, 753
BstKTI GATC 2 cut(s) 485, 547
BstMBI GATC 2 cut(s) 482, 544
BstMWI GCNNNNNNNGC 5 cut(s) 44, 289, 298, 326, 478
BstNI CCWGG 2 cut(s) 34, 159
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 2 cut(s) 32, 157
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 610, 735
BstV2I GAAGAC 1 cut(s) 592
BstZ17I GTATAC 2 cut(s) 539, 770
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 4 cut(s) 90, 187, 220, 322
Cac8I GCNNGC 3 cut(s) 327, 347, 501
CfoI GCGC 2 cut(s) 598, 753
Cfr13I GGNCC 1 cut(s) 22
CviAII CATG 1 cut(s) 684
CviJI RGCY 9 cut(s) 5, 38, 283, 301, 325, 395, 460, 601, 692
CviKI_1 RGCY 9 cut(s) 5, 38, 283, 301, 325, 395, 460, 601, 692
DdeI CTNAG 3 cut(s) 321, 396, 405
DpnI GATC 2 cut(s) 484, 546
DpnII GATC 2 cut(s) 482, 544
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 159, 243
EarI CTCTTC 2 cut(s) 159, 243
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 32, 157
EcoT14I CCWWGG 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 1 cut(s) 687
FaqI GGGAC 3 cut(s) 8, 294, 728
FatI CATG 1 cut(s) 683
FauI CCCGC 2 cut(s) 104, 157
FauNDI CATATG 1 cut(s) 243
FblI GTMKAC 3 cut(s) 538, 621, 769
Fnu4HI GCNGC 5 cut(s) 153, 200, 203, 599, 749
FokI GGATG 4 cut(s) 77, 194, 227, 329
Fsp4HI GCNGC 5 cut(s) 153, 200, 203, 599, 749
GlaI GCGC 2 cut(s) 597, 752
GluI GCNGC 5 cut(s) 153, 200, 203, 599, 749
GsuI CTGGAG 2 cut(s) 141, 759
HaeIII GGCC 1 cut(s) 283
HhaI GCGC 2 cut(s) 598, 753
Hin1II CATG 1 cut(s) 687
Hin6I GCGC 2 cut(s) 596, 751
HinP1I GCGC 2 cut(s) 596, 751
HinfI GANTC 6 cut(s) 112, 193, 232, 307, 383, 659
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 3 cut(s) 539, 622, 770
Hpy188I TCNGA 5 cut(s) 85, 109, 406, 487, 664
Hpy188III TCNNGA 4 cut(s) 236, 296, 311, 443
Hpy8I GTNNAC 3 cut(s) 539, 622, 770
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 312, 450, 641, 736
HpyCH4III ACNGT 4 cut(s) 334, 424, 591, 790
HpyCH4IV ACGT 2 cut(s) 541, 652
HpyCH4V TGCA 3 cut(s) 349, 472, 681
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 289, 298, 326, 478
HpyF3I CTNAG 3 cut(s) 321, 396, 405
HpySE526I ACGT 2 cut(s) 541, 652
Hsp92II CATG 1 cut(s) 687
HspAI GCGC 2 cut(s) 596, 751
Kzo9I GATC 2 cut(s) 482, 544
LmnI GCTCC 4 cut(s) 122, 160, 238, 478
Lsp1109I GCAGC 2 cut(s) 610, 735
LweI GCATC 3 cut(s) 307, 358, 502
MaeII ACGT 2 cut(s) 541, 652
MaeIII GTNAC 2 cut(s) 653, 799
MalI GATC 2 cut(s) 484, 546
MbiI CCGCTC 1 cut(s) 155
MboI GATC 2 cut(s) 482, 544
MboII GAAGA 4 cut(s) 176, 241, 260, 597
MluCI AATT 4 cut(s) 67, 400, 673, 718
MlyI GAGTC 3 cut(s) 202, 316, 668
MmeI TCCRAC 2 cut(s) 108, 165
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 2 cut(s) 360, 738
MspR9I CCNGG 2 cut(s) 34, 159
MvaI CCWGG 2 cut(s) 34, 159
MwoI GCNNNNNNNGC 5 cut(s) 44, 289, 298, 326, 478
NdeI CATATG 1 cut(s) 243
NdeII GATC 2 cut(s) 482, 544
NlaIII CATG 1 cut(s) 687
NlaIV GGNNCC 2 cut(s) 24, 792
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 112, 232, 383
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 5 cut(s) 154, 201, 204, 600, 750
PleI GAGTC 3 cut(s) 201, 315, 667
PpsI GAGTC 3 cut(s) 201, 315, 667
Ppu21I YACGTR 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 32, 157
PspGI CCWGG 2 cut(s) 32, 157
PspN4I GGNNCC 2 cut(s) 24, 792
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 360, 738
SatI GCNGC 5 cut(s) 153, 200, 203, 599, 749
Sau3AI GATC 2 cut(s) 482, 544
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 3 cut(s) 202, 316, 668
ScrFI CCNGG 2 cut(s) 34, 159
SfaNI GCATC 3 cut(s) 307, 358, 502
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 67, 400, 673, 718
SsiI CCGC 7 cut(s) 97, 126, 150, 153, 197, 200, 203
StyD4I CCNGG 2 cut(s) 32, 157
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 4 cut(s) 334, 424, 591, 790
TaiI ACGT 2 cut(s) 544, 655
TaqI TCGA 1 cut(s) 305
TaqII GACCGA 1 cut(s) 285
TasI AATT 4 cut(s) 67, 400, 673, 718
TauI GCSGC 3 cut(s) 155, 202, 205
TfiI GAWTC 3 cut(s) 112, 232, 383
Tru1I TTAA 2 cut(s) 360, 738
Tru9I TTAA 2 cut(s) 360, 738
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 2 cut(s) 598, 748
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 1 cut(s) 711
TspGWI ACGGA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 2 cut(s) 400, 673
XceI RCATGY 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 3 cut(s) 538, 621, 769
XmnI GAANNNNTTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.