Rorug04G0065300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001309
Physical Location & Seq
Forward (+)
10078251 .. 10079822
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0065300.1

Sequence Viewer

Length: 630 bp
ATGCTAGGTGGTGGAAAAAGTGCACCGCCAGGACGGAAAATAATGGTGGTGGCAGATCCAACCCAAGAGTCAGCAGGTGCACTCCAATATGCTCTTTCTAAAGCAGTTTTTGACAATGACGAATTGATCCTTTTCCATGTCGAAAACCCTAATTGGTGGCGAAACACGCTCACCATGTTCCTTAAGAAACCTGGCCTCATGAATTCAGGCCCTGCCAGCACCAGTGCCGGTGCCAGTGCCACCACATCCGTAGACGAAAGCTTTGGAAGAGGGGACATGGAATTTCTTGAAGAAATGAAAAGTGCATGCAAGATTTGCAAGCCAAAAATCCGCGTTCGGATTGAGAAAAAGGCGGTGGTGGAAGGCAAAGACAAAGCAACCATTATTCTAGATCAAAGCAAGGTTCTTGGGATCGATATTCTGATTATAGGACAACGAAAGAGCCTTTCTACAGTACTTTTAGGATATAGGCTGCATGGAGCATCGTCGCGAGGGATAAAGCCTATAGACACAGCAGAGTATTTGATTGATAACAGCAACTGCACTTGTGTTGGAGTACAGAAGAAGGGACAAAATGGAGGTTACCTTCTCAACACAAAAACCCACAAAAACTTCTGGCTTCTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.7

Weight (kDa)

9.33

Isoelectric Point (pI)

20.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 12 - 155 3e-07 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 333, 490
AciI CCGC 3 cut(s) 26, 331, 353
AclWI GGATC 3 cut(s) 50, 121, 419
AcsI RAATTY 2 cut(s) 202, 281
AfaI GTAC 2 cut(s) 456, 558
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 2 cut(s) 28, 190
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw21I GWGCWC 2 cut(s) 25, 82
Alw44I GTGCAC 2 cut(s) 21, 78
AlwI GGATC 3 cut(s) 50, 121, 419
AlwNI CAGNNNCTG 2 cut(s) 212, 540
AoxI GGCC 2 cut(s) 193, 208
ApaLI GTGCAC 2 cut(s) 21, 78
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 2 cut(s) 202, 281
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 163
BaeGI GKGCMC 2 cut(s) 25, 82
BanI GGYRCC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 25, 82
BbvI GCAGC 1 cut(s) 459
BciT130I CCWGG 2 cut(s) 30, 192
BfaI CTAG 2 cut(s) 5, 389
BfmI CTRYAG 2 cut(s) 450, 504
BfrI CTTAAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
BmcAI AGTACT 1 cut(s) 456
Bme1390I CCNGG 2 cut(s) 30, 192
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 30, 192
BmsI GCATC 1 cut(s) 491
Bsa29I ATCGAT 1 cut(s) 414
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 222, 234
BseBI CCWGG 2 cut(s) 30, 192
BseCI ATCGAT 1 cut(s) 414
BseGI GGATG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 222, 234
BseSI GKGCMC 2 cut(s) 25, 82
BseXI GCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 2 cut(s) 333, 490
BshFI GGCC 2 cut(s) 195, 210
BshNI GGYRCC 1 cut(s) 230
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 25, 82
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 287, 582
BsmFI GGGAC 2 cut(s) 287, 582
BsnI GGCC 2 cut(s) 195, 210
Bsp1286I GDGCHC 2 cut(s) 25, 82
Bsp143I GATC 4 cut(s) 55, 126, 391, 411
Bsp68I TCGCGA 1 cut(s) 490
BspACI CCGC 3 cut(s) 26, 331, 353
BspANI GGCC 2 cut(s) 195, 210
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 2 cut(s) 333, 490
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 50, 121, 419
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 222, 234
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 4 cut(s) 55, 126, 391, 411
Bst2UI CCWGG 2 cut(s) 30, 192
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 262
BstAFI CTTAAG 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 217, 307, 320
BstEII GGTNACC 1 cut(s) 581
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 2 cut(s) 333, 490
BstKTI GATC 4 cut(s) 58, 129, 394, 414
BstMBI GATC 4 cut(s) 55, 126, 391, 411
BstMWI GCNNNNNNNGC 3 cut(s) 166, 216, 315
BstNI CCWGG 2 cut(s) 30, 192
BstNSI RCATGY 1 cut(s) 309
BstPI GGTNACC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 28, 190
BstSFI CTRYAG 2 cut(s) 450, 504
BstSLI GKGCMC 2 cut(s) 25, 82
BstUI CGCG 2 cut(s) 333, 490
BstV1I GCAGC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 2 cut(s) 195, 210
BsuTUI ATCGAT 1 cut(s) 414
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 229, 241
BtuMI TCGCGA 1 cut(s) 490
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 217, 307, 320
CaiI CAGNNNCTG 2 cut(s) 212, 540
CciI TCATGA 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 2 cut(s) 455, 557
CviAII CATG 6 cut(s) 137, 175, 199, 277, 306, 476
CviJI RGCY 8 cut(s) 195, 210, 261, 322, 444, 472, 502, 619
CviKI_1 RGCY 8 cut(s) 195, 210, 261, 322, 444, 472, 502, 619
CviQI GTAC 2 cut(s) 455, 557
DpnI GATC 4 cut(s) 57, 128, 393, 413
DpnII GATC 4 cut(s) 55, 126, 391, 411
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco91I GGTNACC 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 28, 190
FaeI CATG 6 cut(s) 140, 178, 202, 280, 309, 479
FaqI GGGAC 2 cut(s) 287, 582
FatI CATG 6 cut(s) 136, 174, 198, 276, 305, 475
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 2 cut(s) 5, 389
GluI GCNGC 1 cut(s) 473
HaeIII GGCC 2 cut(s) 195, 210
HapII CCGG 1 cut(s) 228
Hin1II CATG 6 cut(s) 140, 178, 202, 280, 309, 479
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 3 cut(s) 23, 80, 253
Hpy188I TCNGA 2 cut(s) 339, 423
Hpy188III TCNNGA 4 cut(s) 199, 287, 389, 489
Hpy8I GTNNAC 3 cut(s) 23, 80, 253
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 3 cut(s) 356, 559, 596
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 23, 80, 305, 309, 318, 475, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 216, 315
Hsp92II CATG 6 cut(s) 140, 178, 202, 280, 309, 479
Kzo9I GATC 4 cut(s) 55, 126, 391, 411
LmnI GCTCC 1 cut(s) 479
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 491
MaeI CTAG 2 cut(s) 5, 389
MaeIII GTNAC 1 cut(s) 581
MalI GATC 4 cut(s) 57, 128, 393, 413
MboI GATC 4 cut(s) 55, 126, 391, 411
MboII GAAGA 3 cut(s) 279, 302, 574
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 25, 82
MluCI AATT 4 cut(s) 122, 151, 202, 281
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 83, 532
MnlI CCTC 4 cut(s) 206, 263, 485, 572
MseI TTAA 1 cut(s) 183
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 30, 192
MvaI CCWGG 2 cut(s) 30, 192
MvnI CGCG 2 cut(s) 333, 490
MwoI GCNNNNNNNGC 3 cut(s) 166, 216, 315
NdeII GATC 4 cut(s) 55, 126, 391, 411
NlaIII CATG 6 cut(s) 140, 178, 202, 280, 309, 479
NlaIV GGNNCC 1 cut(s) 232
NruI TCGCGA 1 cut(s) 490
NspI RCATGY 1 cut(s) 309
PaeI GCATGC 1 cut(s) 309
PagI TCATGA 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 474
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 28, 190
PspEI GGTNACC 1 cut(s) 581
PspGI CCWGG 2 cut(s) 28, 190
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 209
PstNI CAGNNNCTG 2 cut(s) 212, 540
PsuI RGATCY 1 cut(s) 55
RruI TCGCGA 1 cut(s) 490
RsaI GTAC 2 cut(s) 456, 558
RsaNI GTAC 2 cut(s) 455, 557
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 4 cut(s) 55, 126, 391, 411
Sau96I GGNCC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 456
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 30, 192
SduI GDGCHC 2 cut(s) 25, 82
SetI ASST 7 cut(s) 10, 79, 193, 263, 405, 583, 588
SfaNI GCATC 1 cut(s) 491
SfcI CTRYAG 2 cut(s) 450, 504
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 309
Sse9I AATT 4 cut(s) 122, 151, 202, 281
SsiI CCGC 3 cut(s) 26, 331, 353
SspMI CTAG 2 cut(s) 5, 389
StyD4I CCNGG 2 cut(s) 28, 190
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 141, 414
TasI AATT 4 cut(s) 122, 151, 202, 281
TatI WGTACW 2 cut(s) 454, 556
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 229, 241
TseI GCWGC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 215, 311
TspGWI ACGGA 2 cut(s) 49, 238
TspRI CASTG 2 cut(s) 229, 241
Vha464I CTTAAG 1 cut(s) 182
VneI GTGCAC 2 cut(s) 21, 78
XapI RAATTY 2 cut(s) 202, 281
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 2 cut(s) 5, 389
ZrmI AGTACT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.