Rh2BG436600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001309
Physical Location & Seq
Reverse (-)
61876022 .. 61882322
6301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG436600.1

Sequence Viewer

Length: 621 bp
ATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTGCAGAGGGAGCGATCCAAGAGGAATGGGAGTAATCTAAGAGGAATAAGCAAGCTAGCGGAGATTGATTCTATGATTAGTTATGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTAGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCGCAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAAAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACTTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTGTTGACGTCTACACCACTGAGTTTGAAAGTTTATTAGGTTTATCAGGTATTAATGCTATTTCCTCTGTTGACTTGAAATTCATAATGGAGTTGATAAATATTGGAATCATACAGGATTTGTTGAACCAAATTGTGGAATCTGCAATTATGATAATCAAAGATTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.71

Weight (kDa)

9.45

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 583
AccI GTMKAC 3 cut(s) 136, 219, 459
AciI CCGC 3 cut(s) 101, 254, 397
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 239, 341
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 4 cut(s) 404, 476, 526, 574
AhlI ACTAGT 1 cut(s) 212
AluBI AGCT 3 cut(s) 97, 199, 434
AluI AGCT 3 cut(s) 97, 199, 434
Alw26I GTCTC 2 cut(s) 178, 393
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 1 cut(s) 299
ApaI GGGCCC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AseI ATTAAT 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 299, 300, 329
AsuNHI GCTAGC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 303
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 178, 393
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 4 cut(s) 98, 213, 266, 408
BfmI CTRYAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 299, 300, 329
BmiI GGNNCC 2 cut(s) 252, 301
BmtI GCTAGC 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 583
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 193, 196
BseSI GKGCMC 1 cut(s) 303
BshFI GGCC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 2 cut(s) 178, 393
BsnI GGCC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 390
Bsp120I GGGCCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 56, 142
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 3 cut(s) 101, 254, 397
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 252, 301
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 56, 142
BssNAI GTATAC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 456
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 2 cut(s) 80, 468
BstDSI CCRYGG 1 cut(s) 303
BstKTI GATC 2 cut(s) 59, 145
BstMAI GTCTC 2 cut(s) 178, 393
BstMBI GATC 2 cut(s) 56, 142
BstMWI GCNNNNNNNGC 2 cut(s) 52, 319
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 95, 99
Cfr13I GGNCC 3 cut(s) 299, 300, 329
Csp6I GTAC 2 cut(s) 238, 340
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 1 cut(s) 304
CviJI RGCY 7 cut(s) 34, 97, 199, 301, 345, 377, 434
CviKI_1 RGCY 7 cut(s) 34, 97, 199, 301, 345, 377, 434
CviQI GTAC 2 cut(s) 238, 340
DdeI CTNAG 2 cut(s) 80, 468
DpnI GATC 2 cut(s) 58, 144
DpnII GATC 2 cut(s) 56, 142
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 307
FatI CATG 1 cut(s) 303
FblI GTMKAC 3 cut(s) 136, 219, 459
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 4 cut(s) 98, 213, 266, 408
HaeIII GGCC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 2 cut(s) 454, 520
HindII GTYRAC 2 cut(s) 454, 520
HinfI GANTC 3 cut(s) 110, 555, 587
Hpy166II GTNNAC 5 cut(s) 137, 220, 454, 460, 520
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 5 cut(s) 137, 220, 454, 460, 520
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 139, 456
HpyCH4V TGCA 2 cut(s) 46, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 319
HpyF3I CTNAG 2 cut(s) 80, 468
HpySE526I ACGT 2 cut(s) 139, 456
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 56, 142
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 170, 242, 359, 480, 548
MaeI CTAG 4 cut(s) 98, 213, 266, 408
MaeII ACGT 2 cut(s) 139, 456
MalI GATC 2 cut(s) 58, 144
MboI GATC 2 cut(s) 56, 142
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 413, 527, 579, 594
MnlI CCTC 9 cut(s) 24, 24, 42, 57, 77, 171, 174, 421, 523
MseI TTAA 2 cut(s) 416, 501
MwoI GCNNNNNNNGC 2 cut(s) 52, 319
NcoI CCATGG 1 cut(s) 303
NdeII GATC 2 cut(s) 56, 142
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 252, 301
PfeI GAWTC 3 cut(s) 110, 555, 587
PflMI CCANNNNNTGG 1 cut(s) 583
Ppu21I YACGTR 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 252, 301
PspOMI GGGCCC 1 cut(s) 299
PspPI GGNCC 3 cut(s) 299, 300, 329
PstI CTGCAG 1 cut(s) 48
RsaI GTAC 2 cut(s) 239, 341
RsaNI GTAC 2 cut(s) 238, 340
SaqAI TTAA 2 cut(s) 416, 501
Sau3AI GATC 2 cut(s) 56, 142
Sau96I GGNCC 3 cut(s) 299, 300, 329
ScaI AGTACT 1 cut(s) 239
SduI GDGCHC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 4 cut(s) 413, 527, 579, 594
SsiI CCGC 3 cut(s) 101, 254, 397
SspI AATATT 1 cut(s) 550
SspMI CTAG 4 cut(s) 98, 213, 266, 408
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 2 cut(s) 142, 459
TasI AATT 4 cut(s) 413, 527, 579, 594
TatI WGTACW 2 cut(s) 237, 339
TfiI GAWTC 3 cut(s) 110, 555, 587
Tru1I TTAA 2 cut(s) 416, 501
Tru9I TTAA 2 cut(s) 416, 501
TscAI CASTG 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 520
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 527
XmiI GTMKAC 3 cut(s) 136, 219, 459
XspI CTAG 4 cut(s) 98, 213, 266, 408
ZraI GACGTC 1 cut(s) 457
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.