Rh3CG097400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001309
Physical Location & Seq
Reverse (-)
7638321 .. 7643374
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG097400.1

Sequence Viewer

Length: 1044 bp
ATGGCTTCCACGGAGGGTCTGGTCCCCATAACCAGGGCTTTTCTCGCTTCTTATTACGACACCTACAATTTCCCCCCTCTCTCCGACGACATCCCCCGCCTCTCCTCCGAGATTCGCTCCCTCACCTCCGATTTGCTCTCCAACTCTCCCGCCACTCCAGGAGAAGAGAGATTAGTAATGGATGAGTTAGCGAGTCCGCCGCCGCATAAAGTGGATGAGAATATGTGGAAGAATCGGGAGCATATGGAAGAGATAGTCTTTTTACTTGACAGACCTCATTGGCCTCAATCGCTTCAAGAGCCTTCAAGTCCCGAGGATGCTCAGCTTGCTACTGTTTTTACTCGCCTGCATCATAAGTTCAATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTGCAGAGGGAGCGATCCGAGAGGAATAAGCAAGCGGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGGTTCTGCTACTGGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCACAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTATGGTTCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAAGCTGTTGACGTCTACACCACTGAGTTTGAAAGGTTTATTAGGTTTATCAGTGAGGTTTTTGCGAATTCGCCCTTCTTTATCTCAGCAGAGGTTGCCGGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAACTGTTCCTGCCGGTAAAACACATGAGGTATGTTTCATATCTGTTGGACTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.69

Weight (kDa)

5.67

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AatII GACGTC 1 cut(s) 861
AccI GTMKAC 3 cut(s) 538, 621, 861
AciI CCGC 7 cut(s) 97, 150, 197, 200, 203, 503, 799
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 1 cut(s) 913
AcyI GRCGYC 1 cut(s) 858
AfaI GTAC 2 cut(s) 641, 743
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 8 cut(s) 296, 306, 361, 373, 392, 418, 806, 878
AjnI CCWGG 2 cut(s) 32, 157
AluBI AGCT 5 cut(s) 325, 395, 601, 836, 851
AluI AGCT 5 cut(s) 325, 395, 601, 836, 851
Alw26I GTCTC 3 cut(s) 580, 795, 977
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 2 cut(s) 311, 792
AoxI GGCC 2 cut(s) 281, 701
ApaI GGGCCC 1 cut(s) 705
ApoI RAATTY 1 cut(s) 913
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 4 cut(s) 22, 701, 702, 731
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 311, 792
AvaII GGWCC 2 cut(s) 22, 731
BaeGI GKGCMC 1 cut(s) 705
BanII GRGCYC 1 cut(s) 705
BccI CCATC 2 cut(s) 692, 950
BciT130I CCWGG 2 cut(s) 34, 159
BcoDI GTCTC 3 cut(s) 580, 795, 977
BfaI CTAG 2 cut(s) 668, 810
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 2 cut(s) 200, 203
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 201, 204
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 34, 159
Bme18I GGWCC 2 cut(s) 22, 731
BmeT110I CYCGRG 2 cut(s) 311, 792
BmgT120I GGNCC 4 cut(s) 22, 701, 702, 731
BmiI GGNNCC 3 cut(s) 24, 654, 703
BmrFI CCNGG 2 cut(s) 34, 159
BmsI GCATC 3 cut(s) 307, 358, 502
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 4 cut(s) 9, 33, 312, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 2 cut(s) 944, 998
Bse1I ACTGG 1 cut(s) 619
BseBI CCWGG 2 cut(s) 34, 159
BseDI CCNNGG 4 cut(s) 9, 33, 312, 705
BseGI GGATG 4 cut(s) 90, 187, 220, 322
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 4 cut(s) 335, 396, 861, 945
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 3 cut(s) 94, 595, 598
BseSI GKGCMC 1 cut(s) 705
BshFI GGCC 2 cut(s) 283, 703
BsiHKCI CYCGRG 2 cut(s) 311, 792
BsiSI CCGG 2 cut(s) 945, 999
BslFI GGGAC 2 cut(s) 8, 294
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 580, 795, 977
BsmFI GGGAC 2 cut(s) 8, 294
BsnI GGCC 2 cut(s) 283, 703
BsoBI CYCGRG 2 cut(s) 311, 792
Bsp120I GGGCCC 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 705
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 2 cut(s) 482, 544
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 7 cut(s) 97, 150, 197, 200, 203, 503, 799
BspANI GGCC 2 cut(s) 283, 703
BspCNI CTCAG 4 cut(s) 334, 397, 862, 944
BspLI GGNNCC 3 cut(s) 24, 654, 703
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 705
BsrFI RCCGGY 2 cut(s) 944, 998
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 2 cut(s) 944, 998
BssECI CCNNGG 4 cut(s) 9, 33, 312, 705
BssMI GATC 2 cut(s) 482, 544
BssNAI GTATAC 1 cut(s) 539
BssNI GRCGYC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 34, 159
Bst4CI ACNGT 4 cut(s) 334, 424, 591, 991
Bst6I CTCTTC 3 cut(s) 159, 243, 705
BstACI GRCGYC 1 cut(s) 858
BstAPI GCANNNNNTGC 1 cut(s) 941
BstAUI TGTACA 1 cut(s) 741
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 327, 347, 501
BstDEI CTNAG 5 cut(s) 321, 396, 405, 870, 931
BstDSI CCRYGG 2 cut(s) 9, 705
BstF5I GGATG 4 cut(s) 90, 187, 220, 322
BstKTI GATC 2 cut(s) 485, 547
BstMAI GTCTC 3 cut(s) 580, 795, 977
BstMBI GATC 2 cut(s) 482, 544
BstMWI GCNNNNNNNGC 7 cut(s) 44, 289, 298, 326, 478, 721, 941
BstNI CCWGG 2 cut(s) 34, 159
BstSCI CCNGG 2 cut(s) 32, 157
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 705
BstZ17I GTATAC 1 cut(s) 539
BsuRI GGCC 2 cut(s) 283, 703
BtgI CCRYGG 2 cut(s) 9, 705
BtsCI GGATG 4 cut(s) 90, 187, 220, 322
BtsIMutI CAGTG 2 cut(s) 867, 904
Cac8I GCNNGC 3 cut(s) 327, 347, 501
Cfr10I RCCGGY 2 cut(s) 944, 998
Cfr13I GGNCC 4 cut(s) 22, 701, 702, 731
Csp6I GTAC 2 cut(s) 640, 742
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 2 cut(s) 706, 1010
CviQI GTAC 2 cut(s) 640, 742
DdeI CTNAG 5 cut(s) 321, 396, 405, 870, 931
DpnI GATC 2 cut(s) 484, 546
DpnII GATC 2 cut(s) 482, 544
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 159, 243, 705
EarI CTCTTC 3 cut(s) 159, 243, 705
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 22, 731
Eco88I CYCGRG 2 cut(s) 311, 792
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 2 cut(s) 32, 157
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 2 cut(s) 709, 1013
FaqI GGGAC 2 cut(s) 8, 294
FatI CATG 2 cut(s) 705, 1009
FauI CCCGC 2 cut(s) 104, 157
FauNDI CATATG 1 cut(s) 243
FblI GTMKAC 3 cut(s) 538, 621, 861
Fnu4HI GCNGC 2 cut(s) 200, 203
FokI GGATG 4 cut(s) 77, 194, 227, 329
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 2 cut(s) 200, 203
FspBI CTAG 2 cut(s) 668, 810
GluI GCNGC 2 cut(s) 200, 203
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 283, 703
HapII CCGG 2 cut(s) 945, 999
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 2 cut(s) 709, 1013
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 5 cut(s) 112, 193, 232, 383, 1035
HpaII CCGG 2 cut(s) 945, 999
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 4 cut(s) 539, 622, 856, 862
Hpy188I TCNGA 5 cut(s) 85, 109, 130, 406, 487
Hpy188III TCNNGA 4 cut(s) 236, 296, 311, 443
Hpy8I GTNNAC 4 cut(s) 539, 622, 856, 862
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 312, 931
HpyCH4III ACNGT 4 cut(s) 334, 424, 591, 991
HpyCH4IV ACGT 3 cut(s) 541, 772, 858
HpyCH4V TGCA 3 cut(s) 349, 472, 950
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 289, 298, 326, 478, 721, 941
HpyF3I CTNAG 5 cut(s) 321, 396, 405, 870, 931
HpySE526I ACGT 3 cut(s) 541, 772, 858
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 2 cut(s) 709, 1013
Kzo9I GATC 2 cut(s) 482, 544
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 3 cut(s) 122, 238, 478
LweI GCATC 3 cut(s) 307, 358, 502
MaeI CTAG 2 cut(s) 668, 810
MaeII ACGT 3 cut(s) 541, 772, 858
MalI GATC 2 cut(s) 484, 546
MboI GATC 2 cut(s) 482, 544
MboII GAAGA 5 cut(s) 176, 241, 260, 722, 755
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 3 cut(s) 67, 815, 913
MlyI GAGTC 2 cut(s) 202, 1029
MmeI TCCRAC 3 cut(s) 108, 165, 1012
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 2 cut(s) 818, 1042
MspI CCGG 2 cut(s) 945, 999
MspR9I CCNGG 2 cut(s) 34, 159
MvaI CCWGG 2 cut(s) 34, 159
MwoI GCNNNNNNNGC 7 cut(s) 44, 289, 298, 326, 478, 721, 941
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 243
NdeII GATC 2 cut(s) 482, 544
NlaIII CATG 2 cut(s) 709, 1013
NlaIV GGNNCC 3 cut(s) 24, 654, 703
PciSI GCTCTTC 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 112, 232, 383
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 201, 204
PleI GAGTC 2 cut(s) 201, 1029
PpsI GAGTC 2 cut(s) 201, 1029
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 32, 157
PspGI CCWGG 2 cut(s) 32, 157
PspN4I GGNNCC 3 cut(s) 24, 654, 703
PspOMI GGGCCC 1 cut(s) 701
PspPI GGNCC 4 cut(s) 22, 701, 702, 731
PstI CTGCAG 1 cut(s) 474
RsaI GTAC 2 cut(s) 641, 743
RsaNI GTAC 2 cut(s) 640, 742
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 2 cut(s) 818, 1042
SatI GCNGC 2 cut(s) 200, 203
Sau3AI GATC 2 cut(s) 482, 544
Sau96I GGNCC 4 cut(s) 22, 701, 702, 731
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 2 cut(s) 202, 1029
ScrFI CCNGG 2 cut(s) 34, 159
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 3 cut(s) 307, 358, 502
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 22, 731
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 3 cut(s) 67, 815, 913
SsiI CCGC 7 cut(s) 97, 150, 197, 200, 203, 503, 799
SspMI CTAG 2 cut(s) 668, 810
StyD4I CCNGG 2 cut(s) 32, 157
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 4 cut(s) 334, 424, 591, 991
TaiI ACGT 3 cut(s) 544, 775, 861
TasI AATT 3 cut(s) 67, 815, 913
TatI WGTACW 2 cut(s) 639, 741
TauI GCSGC 2 cut(s) 202, 205
TfiI GAWTC 3 cut(s) 112, 232, 383
Tru1I TTAA 2 cut(s) 818, 1042
Tru9I TTAA 2 cut(s) 818, 1042
TscAI CASTG 2 cut(s) 874, 904
TspDTI ATGAA 1 cut(s) 1012
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 874, 904
VpaK11BI GGWCC 2 cut(s) 22, 731
XapI RAATTY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 3 cut(s) 538, 621, 861
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 668, 810
ZraI GACGTC 1 cut(s) 859
ZrmI AGTACT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.