Rh6BG240800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
44828011 .. 44832032
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG240800.1

Sequence Viewer

Length: 318 bp
ATGGCGGCAGCAAAGTTGCTTACTTGTATACTTAGTAGGGCAAGAAGGGAACCAATCAAGATGCCATGCTTATTTGGAAGGGAGCATCCAGCTCAGGAGCTCCTTGAGGTTTTTGCAAATTCGCCCTTCTTTATTTCAGCAGAGGTTGCTGGTGCATTAGATGGAGGAAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGTAAAACACATGGGGTTTCTCTGTCTGTGGACTCGATAAATTCGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCGTTCCTAAATTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

5.56

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 5
AcsI RAATTY 3 cut(s) 118, 244, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 2 cut(s) 92, 100
AluI AGCT 2 cut(s) 92, 100
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 3 cut(s) 118, 244, 307
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 51, 94
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 203
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 102
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssNAI GTATAC 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 32, 93
BstF5I GGATG 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 20
BstZ17I GTATAC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 203
CviAII CATG 2 cut(s) 66, 215
CviJI RGCY 2 cut(s) 92, 100
CviKI_1 RGCY 2 cut(s) 92, 100
DdeI CTNAG 2 cut(s) 32, 93
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 69, 218
FaiI YATR 4 cut(s) 29, 67, 216, 252
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 65, 214
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HapII CCGG 1 cut(s) 204
Hin1II CATG 2 cut(s) 69, 218
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 29, 235
Hpy188III TCNNGA 2 cut(s) 58, 95
Hpy8I GTNNAC 2 cut(s) 29, 235
HpyAV CCTTC 3 cut(s) 39, 72, 136
HpyCH4V TGCA 3 cut(s) 116, 155, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 32, 93
Hsp92II CATG 2 cut(s) 69, 218
LmnI GCTCC 3 cut(s) 82, 97, 105
LpnPI CCDG 5 cut(s) 80, 102, 135, 213, 217
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 51, 94
MboII GAAGA 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 118, 244, 307
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 3 cut(s) 100, 136, 158
MseI TTAA 1 cut(s) 316
MspI CCGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 69, 218
NlaIV GGNNCC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 2 cut(s) 6, 9
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 94, 102, 111, 147
SfaNI GCATC 2 cut(s) 51, 94
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 118, 244, 307
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 1 cut(s) 102
TaqI TCGA 1 cut(s) 239
TasI AATT 3 cut(s) 118, 244, 307
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 301
XapI RAATTY 3 cut(s) 118, 244, 307
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.