Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016591.1

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1198

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 482 bp

ttatgacttatattcctcaagattttcgggggaggcttattagactgcagagggagcgatccgagaggaataagcaagcggagattgatgctatgattagttctggggcaagtatacgtgatcgttatgctctcctgtggaaacaacaaatggagaggaggagactgttggcacagcttggttctgctactggtgtctacaaaacccttgtcaagtacttggttggggttccacaggttttactagattttgttcgccaaataaatgatgatgatgggcccatggaagagcaacgacagcgttatggaccgcctttgtacagccttacaactatggtgcttcttatacgtctggctattttgctgtctcgggggcggtttgaaactagaaaattaaacaagcaagaggtagctgtcttggaacaagctgttgatgtctacaccactgagtttgaaaggtttattaggtttatcaggtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.8

Weight (kDa)

9.98

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	114, 197, 437
AciI	CCGC	3 cut(s)	79, 310, 375
AclWI	GGATC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	217, 319
AgsI	TTSAA	2 cut(s)	382, 454
AluBI	AGCT	3 cut(s)	177, 412, 427
AluI	AGCT	3 cut(s)	177, 412, 427
Alw26I	GTCTC	2 cut(s)	156, 371
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	277
ApaI	GGGCCC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	3 cut(s)	277, 278, 307
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	281
BccI	CCATC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	156, 371
BfaI	CTAG	2 cut(s)	244, 386
BfmI	CTRYAG	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	277, 278, 307
BmiI	GGNNCC	2 cut(s)	230, 279
BmsI	GCATC	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	171, 174
BseSI	GKGCMC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	156, 371
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	368
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	58, 120
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	3 cut(s)	79, 310, 375
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	230, 279
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	58, 120
BssNAI	GTATAC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	61, 123
BstMAI	GTCTC	2 cut(s)	156, 371
BstMBI	GATC	2 cut(s)	58, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 297
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	281
BstZ17I	GTATAC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	277, 278, 307
Csp6I	GTAC	2 cut(s)	216, 318
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	7 cut(s)	36, 177, 279, 323, 355, 412, 427
CviKI_1	RGCY	7 cut(s)	36, 177, 279, 323, 355, 412, 427
CviQI	GTAC	2 cut(s)	216, 318
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	60, 122
DpnII	GATC	2 cut(s)	58, 120
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	1 cut(s)	285
FaiI	YATR	9 cut(s)	4, 11, 94, 115, 128, 283, 305, 334, 346
FatI	CATG	1 cut(s)	281
FblI	GTMKAC	3 cut(s)	114, 197, 437
FriOI	GRGCYC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	244, 386
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	285
Hpy166II	GTNNAC	3 cut(s)	115, 198, 438
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	115, 198, 438
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	117, 348
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 297
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	2 cut(s)	117, 348
Hsp92II	CATG	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	58, 120
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	89, 148, 176, 220, 337, 459
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	2 cut(s)	244, 386
MaeII	ACGT	2 cut(s)	117, 348
MalI	GATC	2 cut(s)	60, 122
MboI	GATC	2 cut(s)	58, 120
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	391
MnlI	CCTC	7 cut(s)	26, 26, 44, 59, 149, 152, 399
MseI	TTAA	2 cut(s)	394, 480
MwoI	GCNNNNNNNGC	2 cut(s)	54, 297
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	58, 120
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	230, 279
PciSI	GCTCTTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	230, 279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	277, 278, 307
PstI	CTGCAG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	217, 319
RsaNI	GTAC	2 cut(s)	216, 318
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	394, 480
Sau3AI	GATC	2 cut(s)	58, 120
Sau96I	GGNCC	3 cut(s)	277, 278, 307
ScaI	AGTACT	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	3 cut(s)	79, 310, 375
SspMI	CTAG	2 cut(s)	244, 386
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	2 cut(s)	120, 351
TasI	AATT	1 cut(s)	391
TatI	WGTACW	2 cut(s)	215, 317
Tru1I	TTAA	2 cut(s)	394, 480
Tru9I	TTAA	2 cut(s)	394, 480
TscAI	CASTG	1 cut(s)	450
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	307
XmiI	GTMKAC	3 cut(s)	114, 197, 437
XspI	CTAG	2 cut(s)	244, 386
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.