Rw2G034970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001309
Physical Location & Seq
Forward (+)
57594782 .. 57604190
9409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034970.1

Sequence Viewer

Length: 1299 bp
ATGGAAATTGCTTCATACAACATGTTTAAGGAGCTTCCGTTGTGCGAAGATGTTACAATTCATAATTTTTTAGATAGAAGAACATTGTACAACACTTATAAGGATGGTTCGGAAGAGGATTGGTACTCTGGAGTTGAGCATTATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTCAAAGAGATGGATTACAAGGAAGAAAACCAGAGAAATGTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTGTTTTCACTCGCCTGCATCATAAGTTCAATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTAGACTTAATCTGAGAGGAATAAGCAAGCTAGCGGAGATTGATTCTATGATTAGTTATGGGGCAAGTATACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTAGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCGCAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAAAGCAACGACAGCGTTATGGACCACCTTTGTACAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTGTTGACGTCTACAACACTGAGTTTGAAAGTTTATTAGGTTTATCAGACTTTCAGCTGCTTATTTCTATATCAATTAATGTAATATGCATTTTTTTCAGTGAGGTTTTTGCGAATTTGCCCTTCTTTATTTCAGCAGAGGTTGCTGGTGCATTTGATGGAGGGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGTAAAACACATGGGGTTTCTCTGTTTGTGGACTCGATAAATTCGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGATGTTGGGTTGGAATATTCACTTTCTGGTCATTGTTCGACCCAAGGTTGCCATTCTGAGTACTATGAGGTTGAATATAGCAAAAAAGTGCTCGCTTTTCAGATTCTCCAGGAAATTTGGCTGCGTAGTTGTATAATGATATCCTTGCGCTTTGAAAGCGTTAACCAACAGGGAATCGAGGCTAACACGCACCCTTTTTTTTTCAAGGCGAAGCTCCGCTTTAAAATTAACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

49.97

Weight (kDa)

5.99

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AasI GACNNNNNNGTC 1 cut(s) 301
AatII GACGTC 1 cut(s) 783
Acc36I ACCTGC 1 cut(s) 571
AccI GTMKAC 3 cut(s) 460, 543, 783
AciI CCGC 4 cut(s) 425, 578, 721, 1279
AcsI RAATTY 3 cut(s) 886, 1012, 1176
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 6 cut(s) 89, 125, 158, 563, 665, 1124
AflIII ACRYGT 2 cut(s) 21, 1293
AgsI TTSAA 9 cut(s) 289, 301, 320, 346, 728, 800, 1136, 1217, 1267
AhlI ACTAGT 1 cut(s) 536
AjnI CCWGG 1 cut(s) 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AluBI AGCT 9 cut(s) 34, 178, 253, 323, 421, 523, 758, 829, 1276
AluI AGCT 9 cut(s) 34, 178, 253, 323, 421, 523, 758, 829, 1276
Alw21I GWGCWC 2 cut(s) 180, 1155
Alw26I GTCTC 3 cut(s) 502, 717, 950
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 1 cut(s) 623
ApaI GGGCCC 1 cut(s) 627
ApeKI GCWGC 2 cut(s) 829, 1183
ApoI RAATTY 3 cut(s) 886, 1012, 1176
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
AseI ATTAAT 1 cut(s) 849
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 1212
AspS9I GGNCC 3 cut(s) 623, 624, 653
AsuNHI GCTAGC 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 627
BanII GRGCYC 2 cut(s) 180, 627
Bbv12I GWGCWC 2 cut(s) 180, 1155
BbvI GCAGC 2 cut(s) 816, 1170
BccI CCATC 4 cut(s) 98, 181, 614, 923
BciT130I CCWGG 1 cut(s) 1172
BcoDI GTCTC 3 cut(s) 502, 717, 950
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 4 cut(s) 422, 537, 590, 732
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 2 cut(s) 830, 1184
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 2 cut(s) 831, 1185
BmcAI AGTACT 2 cut(s) 563, 1124
Bme1390I CCNGG 1 cut(s) 1172
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 3 cut(s) 623, 624, 653
BmiI GGNNCC 2 cut(s) 576, 625
BmrFI CCNGG 1 cut(s) 1172
BmsI GCATC 2 cut(s) 235, 286
BmtI GCTAGC 1 cut(s) 425
BpmI CTGGAG 2 cut(s) 150, 1154
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 2 cut(s) 627, 1105
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 149, 179
Bse118I RCCGGY 1 cut(s) 971
Bse21I CCTNAGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 2 cut(s) 627, 1105
BseGI GGATG 4 cut(s) 109, 155, 250, 1069
BseMII CTCAG 6 cut(s) 231, 263, 324, 395, 783, 1110
BseRI GAGGAG 3 cut(s) 157, 517, 520
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 2 cut(s) 816, 1170
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 625
BsiEI CGRYCG 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 180, 1155
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 1 cut(s) 972
BsmAI GTCTC 3 cut(s) 502, 717, 950
BsnI GGCC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 714
Bsp120I GGGCCC 1 cut(s) 623
Bsp1286I GDGCHC 3 cut(s) 180, 627, 1155
Bsp1407I TGTACA 2 cut(s) 87, 663
Bsp143I GATC 2 cut(s) 230, 466
Bsp1720I GCTNAGC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 4 cut(s) 425, 578, 721, 1279
BspANI GGCC 1 cut(s) 625
BspCNI CTCAG 6 cut(s) 232, 262, 325, 396, 784, 1111
BspLI GGNNCC 2 cut(s) 576, 625
BspMI ACCTGC 1 cut(s) 571
BspOI GCTAGC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 971
BsrGI TGTACA 2 cut(s) 87, 663
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 2 cut(s) 627, 1105
BssMI GATC 2 cut(s) 230, 466
BssNAI GTATAC 1 cut(s) 461
BssNI GRCGYC 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 627, 1105
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 3 cut(s) 262, 352, 513
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 780
BstAPI GCANNNNNTGC 1 cut(s) 914
BstAUI TGTACA 2 cut(s) 87, 663
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 5 cut(s) 255, 275, 419, 423, 1155
BstDEI CTNAG 7 cut(s) 240, 249, 324, 333, 404, 792, 1119
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 4 cut(s) 109, 155, 250, 1069
BstHHI GCGC 1 cut(s) 1212
BstKTI GATC 2 cut(s) 233, 469
BstMAI GTCTC 3 cut(s) 502, 717, 950
BstMBI GATC 2 cut(s) 230, 466
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 4 cut(s) 254, 643, 914, 1218
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 1170
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 816, 1170
BstZ17I GTATAC 1 cut(s) 461
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 4 cut(s) 109, 155, 250, 1069
BtsIMutI CAGTG 2 cut(s) 789, 877
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 5 cut(s) 255, 275, 419, 423, 1155
CfoI GCGC 1 cut(s) 1212
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 3 cut(s) 623, 624, 653
Csp6I GTAC 6 cut(s) 88, 124, 157, 562, 664, 1123
CviAII CATG 3 cut(s) 22, 628, 983
CviQI GTAC 6 cut(s) 88, 124, 157, 562, 664, 1123
DdeI CTNAG 7 cut(s) 240, 249, 324, 333, 404, 792, 1119
DpnI GATC 2 cut(s) 232, 468
DpnII GATC 2 cut(s) 230, 466
DraI TTTAAA 1 cut(s) 1285
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 627, 1105
Eco24I GRGCYC 2 cut(s) 180, 627
Eco32I GATATC 1 cut(s) 1203
Eco47I GGWCC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 178
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 1170
EcoRV GATATC 1 cut(s) 1203
EcoT14I CCWWGG 2 cut(s) 627, 1105
EcoT22I ATGCAT 1 cut(s) 863
EcoT38I GRGCYC 2 cut(s) 180, 627
ErhI CCWWGG 2 cut(s) 627, 1105
FaeI CATG 3 cut(s) 25, 631, 986
FalI AAGNNNNNCTT 4 cut(s) 1043, 1075, 1265, 1297
FatI CATG 3 cut(s) 21, 627, 982
FblI GTMKAC 3 cut(s) 460, 543, 783
Fnu4HI GCNGC 2 cut(s) 830, 1184
FokI GGATG 4 cut(s) 116, 162, 257, 1076
FriOI GRGCYC 2 cut(s) 180, 627
Fsp4HI GCNGC 2 cut(s) 830, 1184
FspBI CTAG 4 cut(s) 422, 537, 590, 732
GlaI GCGC 1 cut(s) 1211
GluI GCNGC 2 cut(s) 830, 1184
GsuI CTGGAG 2 cut(s) 150, 1154
HaeIII GGCC 1 cut(s) 625
HapII CCGG 1 cut(s) 972
HhaI GCGC 1 cut(s) 1212
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 3 cut(s) 25, 631, 986
Hin6I GCGC 1 cut(s) 1210
HinP1I GCGC 1 cut(s) 1210
HincII GTYRAC 2 cut(s) 778, 1225
HindII GTYRAC 2 cut(s) 778, 1225
HinfI GANTC 6 cut(s) 235, 311, 434, 1004, 1165, 1236
HpaI GTTAAC 1 cut(s) 1225
HpaII CCGG 1 cut(s) 972
Hpy166II GTNNAC 6 cut(s) 461, 544, 778, 784, 1003, 1225
Hpy188I TCNGA 6 cut(s) 112, 334, 405, 820, 1120, 1164
Hpy188III TCNNGA 4 cut(s) 129, 228, 239, 371
Hpy8I GTNNAC 6 cut(s) 461, 544, 778, 784, 1003, 1225
HpyAV CCTTC 2 cut(s) 140, 904
HpyCH4III ACNGT 3 cut(s) 262, 352, 513
HpyCH4IV ACGT 4 cut(s) 463, 694, 780, 1293
HpyCH4V TGCA 4 cut(s) 277, 861, 923, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 643, 914, 1218
HpyF3I CTNAG 7 cut(s) 240, 249, 324, 333, 404, 792, 1119
HpySE526I ACGT 4 cut(s) 463, 694, 780, 1293
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 3 cut(s) 25, 631, 986
HspAI GCGC 1 cut(s) 1210
KspAI GTTAAC 1 cut(s) 1225
Kzo9I GATC 2 cut(s) 230, 466
LmnI GCTCC 2 cut(s) 31, 1281
Lsp1109I GCAGC 2 cut(s) 816, 1170
LweI GCATC 2 cut(s) 235, 286
MaeI CTAG 4 cut(s) 422, 537, 590, 732
MaeII ACGT 4 cut(s) 463, 694, 780, 1293
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 232, 468
MboI GATC 2 cut(s) 230, 466
MboII GAAGA 6 cut(s) 59, 90, 125, 154, 212, 1063
MhlI GDGCHC 3 cut(s) 180, 627, 1155
MluCI AATT 9 cut(s) 6, 57, 64, 737, 846, 886, 1012, 1176, 1287
MlyI GAGTC 2 cut(s) 244, 998
MmeI TCCRAC 1 cut(s) 1053
Mph1103I ATGCAT 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 7 cut(s) 27, 399, 740, 849, 1224, 1284, 1290
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 1 cut(s) 972
MspR9I CCNGG 1 cut(s) 1172
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 4 cut(s) 254, 643, 914, 1218
NcoI CCATGG 1 cut(s) 627
NdeII GATC 2 cut(s) 230, 466
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 25, 631, 986
NlaIV GGNNCC 2 cut(s) 576, 625
NsiI ATGCAT 1 cut(s) 863
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 1013
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 4 cut(s) 311, 434, 1165, 1236
PfoI TCCNGGA 1 cut(s) 1170
PkrI GCNGC 2 cut(s) 831, 1185
Ple19I CGATCG 1 cut(s) 233
PleI GAGTC 2 cut(s) 243, 998
PpsI GAGTC 2 cut(s) 243, 998
Ppu21I YACGTR 1 cut(s) 464
PscI ACATGT 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 849
PsiI TTATAA 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 1170
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 2 cut(s) 576, 625
PspOMI GGGCCC 1 cut(s) 623
PspPI GGNCC 3 cut(s) 623, 624, 653
PvuI CGATCG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 6 cut(s) 89, 125, 158, 563, 665, 1124
RsaNI GTAC 6 cut(s) 88, 124, 157, 562, 664, 1123
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 7 cut(s) 27, 399, 740, 849, 1224, 1284, 1290
SatI GCNGC 2 cut(s) 830, 1184
Sau3AI GATC 2 cut(s) 230, 466
Sau96I GGNCC 3 cut(s) 623, 624, 653
ScaI AGTACT 2 cut(s) 563, 1124
SchI GAGTC 2 cut(s) 244, 998
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 3 cut(s) 180, 627, 1155
SfaNI GCATC 2 cut(s) 235, 286
SinI GGWCC 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 9 cut(s) 6, 57, 64, 737, 846, 886, 1012, 1176, 1287
SsiI CCGC 4 cut(s) 425, 578, 721, 1279
SspI AATATT 1 cut(s) 1079
SspMI CTAG 4 cut(s) 422, 537, 590, 732
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 1170
StyI CCWWGG 2 cut(s) 627, 1105
TaaI ACNGT 3 cut(s) 262, 352, 513
TaiI ACGT 4 cut(s) 466, 697, 783, 1296
TaqI TCGA 5 cut(s) 229, 233, 1007, 1100, 1239
TasI AATT 9 cut(s) 6, 57, 64, 737, 846, 886, 1012, 1176, 1287
TatI WGTACW 4 cut(s) 87, 561, 663, 1122
TfiI GAWTC 4 cut(s) 311, 434, 1165, 1236
Tru1I TTAA 7 cut(s) 27, 399, 740, 849, 1224, 1284, 1290
Tru9I TTAA 7 cut(s) 27, 399, 740, 849, 1224, 1284, 1290
TscAI CASTG 2 cut(s) 796, 877
TseI GCWGC 2 cut(s) 829, 1183
TspDTI ATGAA 2 cut(s) 50, 159
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 2 cut(s) 796, 877
VpaK11BI GGWCC 1 cut(s) 653
VspI ATTAAT 1 cut(s) 849
XapI RAATTY 3 cut(s) 886, 1012, 1176
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 3 cut(s) 460, 543, 783
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 4 cut(s) 422, 537, 590, 732
ZraI GACGTC 1 cut(s) 781
ZrmI AGTACT 2 cut(s) 563, 1124
Zsp2I ATGCAT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.