Rw6G015800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001309
Physical Location & Seq
Forward (+)
30551427 .. 30560035
8609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015800.1

Sequence Viewer

Length: 1146 bp
ATGCCTTCAGAATCAGACAACATAACTTCATTTATGTGTTGTCTGATTCATGAATACAAAATAAAAGGAGATTGGTACTCTGGAGTTGAGCATTATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTCAAAGAGATGGATTACGAGGAAGAAAACCAGAGGCGAAAAGATAAAAGAAATGTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTGTTTTCACTTGCCTGCATCATAAGTTCAATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGGGGGAGGCTTATTATACTGCAGAGGGAGCGATCCGAGAGGAATGGGACGGAGATTGATGCTATGATTAGTTCTGGGGCAAGTATACGTGATCGTTATGCTCTCCTGAGGAGACTGTTGGCACAGCTTGTTTCTGCTACTAGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCACAGGTATGCTCTTATTTTGTTCACCAAATAAATGATGATGATGGGCCCTTGGAAGAGCAACGACAGCGTTATGGACCACCTTTTTGCAGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGGTAGCTGTCTTGGAACAATCTGTTGACGTCTACACCACTGATGAGGTTTTTGCGAATTCGCCCTTCTTTATTTCAGCAGAGGTTGCTGGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGCAAAACACATGGGGTTTCTCTGTCTGTGGACTCGATAAATTCGTATATTTCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGATGTTGGGTTGGAATATTCACTTTCTGGTCATTGTTCGACCCAAGGTTGCCATTCTGAGTACTATGAGGTTGAATATAGCAAAAAAAACTACAAAAACCAACCTGGGGATCAACTATCTAGCCATGATATAGGAGAGAACATTACCTGCAAGAAATTAAAATATAAAATGATATTAGTAAGCATATTCCTTGTTTCCTGCTGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

43.46

Weight (kDa)

5.8

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
AatII GACGTC 1 cut(s) 732
Acc36I ACCTGC 1 cut(s) 1088
AccI GTMKAC 3 cut(s) 430, 492, 732
AciI CCGC 1 cut(s) 670
AclWI GGATC 2 cut(s) 372, 1050
AcsI RAATTY 2 cut(s) 757, 883
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 4 cut(s) 77, 110, 512, 995
AfiI CCNNNNNNNGG 1 cut(s) 1039
AgsI TTSAA 6 cut(s) 256, 268, 287, 313, 677, 1007
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 1 cut(s) 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 914, 946
AluBI AGCT 5 cut(s) 130, 220, 290, 472, 707
AluI AGCT 5 cut(s) 130, 220, 290, 472, 707
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 3 cut(s) 451, 666, 821
AlwI GGATC 2 cut(s) 372, 1050
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 1 cut(s) 572
ApaI GGGCCC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 615
ApoI RAATTY 2 cut(s) 757, 883
ArsI GACNNNNNNTTYG 4 cut(s) 489, 521, 594, 626
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 572, 573, 602
AsuHPI GGTGA 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 602
AxyI CCTNAGG 2 cut(s) 207, 452
BaeGI GKGCMC 1 cut(s) 576
BanII GRGCYC 2 cut(s) 132, 576
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 627
BccI CCATC 3 cut(s) 133, 563, 794
BciT130I CCWGG 1 cut(s) 1038
BcoDI GTCTC 3 cut(s) 451, 666, 821
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 486, 681, 1053
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 1088
BisI GCNGC 1 cut(s) 616
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 617
BmcAI AGTACT 2 cut(s) 512, 995
Bme1390I CCNGG 1 cut(s) 1038
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 3 cut(s) 572, 573, 602
BmiI GGNNCC 2 cut(s) 525, 574
BmrFI CCNGG 1 cut(s) 1038
BmsI GCATC 3 cut(s) 202, 253, 394
BpmI CTGGAG 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 729
BsaJI CCNNGG 3 cut(s) 576, 976, 1037
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 1039
Bse118I RCCGGY 1 cut(s) 842
Bse21I CCTNAGG 2 cut(s) 207, 452
BseBI CCWGG 1 cut(s) 1038
BseDI CCNNGG 3 cut(s) 576, 976, 1037
BseGI GGATG 3 cut(s) 107, 217, 940
BseLI CCNNNNNNNGG 1 cut(s) 1039
BseMII CTCAG 5 cut(s) 198, 230, 291, 443, 981
BseRI GAGGAG 2 cut(s) 109, 469
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 574
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 1039
BsmAI GTCTC 3 cut(s) 451, 666, 821
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 1 cut(s) 574
BsoBI CYCGRG 1 cut(s) 663
Bsp120I GGGCCC 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 132, 576
Bsp143I GATC 4 cut(s) 197, 377, 436, 1042
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 670
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 5 cut(s) 199, 229, 292, 444, 982
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 525, 574
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 2 cut(s) 372, 1050
BspQI GCTCTTC 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 842
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 3 cut(s) 576, 976, 1037
BssMI GATC 4 cut(s) 197, 377, 436, 1042
BssNAI GTATAC 1 cut(s) 431
BssNI GRCGYC 1 cut(s) 729
BssT1I CCWWGG 2 cut(s) 576, 976
Bst1107I GTATAC 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 1038
Bst4CI ACNGT 3 cut(s) 229, 319, 462
Bst6I CTCTTC 1 cut(s) 576
BstACI GRCGYC 1 cut(s) 729
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 222, 242, 844
BstDEI CTNAG 6 cut(s) 207, 216, 291, 300, 452, 990
BstF5I GGATG 3 cut(s) 107, 217, 940
BstKTI GATC 4 cut(s) 200, 380, 439, 1045
BstMAI GTCTC 3 cut(s) 451, 666, 821
BstMBI GATC 4 cut(s) 197, 377, 436, 1042
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 4 cut(s) 221, 373, 592, 785
BstNI CCWGG 1 cut(s) 1038
BstSCI CCNGG 1 cut(s) 1036
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 627
BstZ17I GTATAC 1 cut(s) 431
Bsu36I CCTNAGG 2 cut(s) 207, 452
BsuRI GGCC 1 cut(s) 574
BtsCI GGATG 3 cut(s) 107, 217, 940
BtsIMutI CAGTG 1 cut(s) 738
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 3 cut(s) 222, 242, 844
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 3 cut(s) 572, 573, 602
Csp6I GTAC 4 cut(s) 76, 109, 511, 994
CviAII CATG 3 cut(s) 50, 854, 1058
CviQI GTAC 4 cut(s) 76, 109, 511, 994
DdeI CTNAG 6 cut(s) 207, 216, 291, 300, 452, 990
DpnI GATC 4 cut(s) 199, 379, 438, 1044
DpnII GATC 4 cut(s) 197, 377, 436, 1042
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 576, 976
Eco24I GRGCYC 2 cut(s) 132, 576
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 1 cut(s) 130
Eco81I CCTNAGG 2 cut(s) 207, 452
Eco88I CYCGRG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 1036
EcoT14I CCWWGG 2 cut(s) 576, 976
EcoT38I GRGCYC 2 cut(s) 132, 576
ErhI CCWWGG 2 cut(s) 576, 976
FaeI CATG 3 cut(s) 53, 857, 1061
FalI AAGNNNNNCTT 2 cut(s) 914, 946
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 49, 853, 1057
FblI GTMKAC 3 cut(s) 430, 492, 732
Fnu4HI GCNGC 1 cut(s) 616
FokI GGATG 3 cut(s) 114, 224, 947
FriOI GRGCYC 2 cut(s) 132, 576
Fsp4HI GCNGC 1 cut(s) 616
FspBI CTAG 3 cut(s) 486, 681, 1053
GluI GCNGC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 574
HapII CCGG 1 cut(s) 843
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 3 cut(s) 53, 857, 1061
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 5 cut(s) 11, 46, 202, 278, 875
HpaII CCGG 1 cut(s) 843
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 6 cut(s) 431, 493, 550, 727, 733, 874
Hpy188I TCNGA 6 cut(s) 10, 16, 45, 301, 382, 991
Hpy188III TCNNGA 6 cut(s) 50, 81, 195, 206, 338, 451
Hpy8I GTNNAC 6 cut(s) 431, 493, 550, 727, 733, 874
HpyAV CCTTC 3 cut(s) 15, 92, 775
HpyCH4III ACNGT 3 cut(s) 229, 319, 462
HpyCH4IV ACGT 3 cut(s) 433, 643, 729
HpyCH4V TGCA 6 cut(s) 244, 367, 615, 794, 916, 1083
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 373, 592, 785
HpyF3I CTNAG 6 cut(s) 207, 216, 291, 300, 452, 990
HpySE526I ACGT 3 cut(s) 433, 643, 729
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 3 cut(s) 53, 857, 1061
KroI GCCGGC 1 cut(s) 842
KroNI GCCGGC 1 cut(s) 844
Kzo9I GATC 4 cut(s) 197, 377, 436, 1042
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 1 cut(s) 627
LweI GCATC 3 cut(s) 202, 253, 394
MaeI CTAG 3 cut(s) 486, 681, 1053
MaeII ACGT 3 cut(s) 433, 643, 729
MalI GATC 4 cut(s) 199, 379, 438, 1044
MboI GATC 4 cut(s) 197, 377, 436, 1042
MboII GAAGA 4 cut(s) 106, 164, 593, 934
MhlI GDGCHC 2 cut(s) 132, 576
MluCI AATT 4 cut(s) 686, 757, 883, 1088
MlyI GAGTC 2 cut(s) 211, 869
MmeI TCCRAC 1 cut(s) 924
MroNI GCCGGC 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 689, 1091
MslI CAYNNNNRTG 2 cut(s) 34, 532
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 1038
MwoI GCNNNNNNNGC 4 cut(s) 221, 373, 592, 785
NaeI GCCGGC 1 cut(s) 844
NdeII GATC 4 cut(s) 197, 377, 436, 1042
NgoMIV GCCGGC 1 cut(s) 842
NlaIII CATG 3 cut(s) 53, 857, 1061
NlaIV GGNNCC 2 cut(s) 525, 574
PagI TCATGA 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 884
PdiI GCCGGC 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 11, 46, 278
PkrI GCNGC 1 cut(s) 617
Ple19I CGATCG 1 cut(s) 200
PleI GAGTC 2 cut(s) 210, 869
PpsI GAGTC 2 cut(s) 210, 869
Ppu21I YACGTR 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 1036
PspGI CCWGG 1 cut(s) 1036
PspN4I GGNNCC 2 cut(s) 525, 574
PspOMI GGGCCC 1 cut(s) 572
PspPI GGNCC 3 cut(s) 572, 573, 602
PstI CTGCAG 1 cut(s) 369
PvuI CGATCG 1 cut(s) 200
RsaI GTAC 4 cut(s) 77, 110, 512, 995
RsaNI GTAC 4 cut(s) 76, 109, 511, 994
RseI CAYNNNNRTG 2 cut(s) 34, 532
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 689, 1091
SatI GCNGC 1 cut(s) 616
Sau3AI GATC 4 cut(s) 197, 377, 436, 1042
Sau96I GGNCC 3 cut(s) 572, 573, 602
ScaI AGTACT 2 cut(s) 512, 995
SchI GAGTC 2 cut(s) 211, 869
ScrFI CCNGG 1 cut(s) 1038
SduI GDGCHC 2 cut(s) 132, 576
SfaNI GCATC 3 cut(s) 202, 253, 394
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 34, 532
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 4 cut(s) 686, 757, 883, 1088
SsiI CCGC 1 cut(s) 670
SspI AATATT 1 cut(s) 950
SspMI CTAG 3 cut(s) 486, 681, 1053
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 1036
StyI CCWWGG 2 cut(s) 576, 976
TaaI ACNGT 3 cut(s) 229, 319, 462
TaiI ACGT 3 cut(s) 436, 646, 732
TaqI TCGA 4 cut(s) 196, 200, 878, 971
TasI AATT 4 cut(s) 686, 757, 883, 1088
TatI WGTACW 2 cut(s) 510, 993
TfiI GAWTC 3 cut(s) 11, 46, 278
Tru1I TTAA 2 cut(s) 689, 1091
Tru9I TTAA 2 cut(s) 689, 1091
TscAI CASTG 1 cut(s) 745
TseI GCWGC 1 cut(s) 615
TspDTI ATGAA 4 cut(s) 18, 38, 66, 111
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 757, 883
XmiI GTMKAC 3 cut(s) 430, 492, 732
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 486, 681, 1053
ZraI GACGTC 1 cut(s) 730
ZrmI AGTACT 2 cut(s) 512, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.