RchiOBHm_Chr3g0481991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001309
Physical Location & Seq
Reverse (-)
28084138 .. 28086340
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44689

Sequence Viewer

Length: 669 bp
ATGATTAGTTCTGGGGCAAGTAAACGTGATCGTTATGCTCTCCTGTGGAAACAACAAATGGAGAGTTGTTCACGGCCTTTCAGGAGGAGACTGTTGGCACAGTTTGTTTCTGCTACTGGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCACAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCGTTATGGACCACCTTTGTACGGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGAAAGAGGTAGCTGTCTTGGAACAATCTGTTGACGTCTACATCACTGAGTTTGAAAGTTTATTAGGTTTATCAAGTATTAATGCTATTTCCTCTGTTGACTTGGTAACATTAGACGTTGATGTTATTATTTATGATTTTGCGAATTCGCCCTTCTTTATTTCAGCAGAGGTTGTTGGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAAATGTTCCTGCCGGTAAAACACATGGGGTTTCTCTGTCTGTGGACTCGATAAATTCGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCGTTCCTAAATTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.84

Weight (kDa)

5.52

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 123, 363
AciI CCGC 1 cut(s) 301
AcsI RAATTY 3 cut(s) 469, 595, 658
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 143, 245
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 308, 380
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 82, 297, 533
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 3 cut(s) 74, 203, 247
ApaI GGGCCC 1 cut(s) 207
ApoI RAATTY 3 cut(s) 469, 595, 658
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AseI ATTAAT 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 203, 204, 233
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 207
BccI CCATC 2 cut(s) 194, 506
BceAI ACGGC 2 cut(s) 89, 262
BcoDI GTCTC 3 cut(s) 82, 297, 533
BfaI CTAG 2 cut(s) 170, 312
BmcAI AGTACT 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 203, 204, 233
BmiI GGNNCC 2 cut(s) 156, 205
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 207
BshFI GGCC 3 cut(s) 76, 205, 249
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 3 cut(s) 82, 297, 533
BsnI GGCC 3 cut(s) 76, 205, 249
BsoBI CYCGRG 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 301
BspANI GGCC 3 cut(s) 76, 205, 249
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 156, 205
BspQI GCTCTTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 93, 102
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 207
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 3 cut(s) 82, 297, 533
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 76, 205, 249
BtgI CCRYGG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 3 cut(s) 203, 204, 233
Csp6I GTAC 2 cut(s) 142, 244
CviAII CATG 2 cut(s) 208, 566
CviJI RGCY 5 cut(s) 76, 205, 249, 281, 338
CviKI_1 RGCY 5 cut(s) 76, 205, 249, 281, 338
CviQI GTAC 2 cut(s) 142, 244
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 211, 569
FaiI YATR 7 cut(s) 36, 209, 231, 272, 459, 567, 603
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 2 cut(s) 207, 565
FblI GTMKAC 2 cut(s) 123, 363
FriOI GRGCYC 1 cut(s) 207
FspBI CTAG 2 cut(s) 170, 312
HaeIII GGCC 3 cut(s) 76, 205, 249
HapII CCGG 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 211, 569
HincII GTYRAC 2 cut(s) 358, 424
HindII GTYRAC 2 cut(s) 358, 424
HinfI GANTC 1 cut(s) 587
HpaII CCGG 1 cut(s) 555
Hpy166II GTNNAC 7 cut(s) 23, 71, 124, 358, 364, 424, 586
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 7 cut(s) 23, 71, 124, 358, 364, 424, 586
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 93, 102
HpyCH4IV ACGT 4 cut(s) 25, 274, 360, 441
HpyCH4V TGCA 2 cut(s) 506, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 4 cut(s) 25, 274, 360, 441
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 211, 569
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 56, 67, 102, 146, 263, 564, 568
MaeI CTAG 2 cut(s) 170, 312
MaeII ACGT 4 cut(s) 25, 274, 360, 441
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 224, 646
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 4 cut(s) 317, 469, 595, 658
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 5 cut(s) 78, 325, 427, 487, 509
MseI TTAA 3 cut(s) 320, 405, 667
MspI CCGG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 223
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 211, 569
NlaIV GGNNCC 2 cut(s) 156, 205
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PshBI ATTAAT 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 156, 205
PspOMI GGGCCC 1 cut(s) 203
PspPI GGNCC 3 cut(s) 203, 204, 233
RsaI GTAC 2 cut(s) 143, 245
RsaNI GTAC 2 cut(s) 142, 244
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 320, 405, 667
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 3 cut(s) 203, 204, 233
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 1 cut(s) 581
SduI GDGCHC 1 cut(s) 207
SinI GGWCC 1 cut(s) 233
Sse9I AATT 4 cut(s) 317, 469, 595, 658
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 170, 312
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 93, 102
TaiI ACGT 4 cut(s) 28, 277, 363, 444
TaqI TCGA 1 cut(s) 590
TasI AATT 4 cut(s) 317, 469, 595, 658
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 3 cut(s) 320, 405, 667
Tru9I TTAA 3 cut(s) 320, 405, 667
TscAI CASTG 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 652
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 233
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 3 cut(s) 469, 595, 658
XmiI GTMKAC 2 cut(s) 123, 363
XspI CTAG 2 cut(s) 170, 312
ZraI GACGTC 1 cut(s) 361
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.