Rmu_sc0031252.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031252.1
Physical Location & Seq
Reverse (-)
491 .. 1952
1462 bp
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UTR
Exon/CDS
Intron
Rmu_sc0031252.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
atgacaaattttaaactgtataaagattgtgtgaggatgttgggttggaatattcactttctggtcattgttcgacccaagattgatgtctgtggtcaggatatcggatttagtgtggagtatacaaatgcgtctggggttaaatctctcattttaccttacaaacgttacgagtctgaccaagggaatttctgcacgtgcgaggctggaaactacaaactcatttgggacaattcatattcaagtttctttaagaaggtgctgcgctataaggtagattgtatacctccagttgttgaaacggtacctcctgttgaagttgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.6

Weight (kDa)

6.57

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 2 cut(s) 122, 283
AclI AACGTT 1 cut(s) 166
AcsI RAATTY 2 cut(s) 7, 187
AcvI CACGTG 1 cut(s) 198
AfaI GTAC 1 cut(s) 306
AgsI TTSAA 4 cut(s) 243, 299, 317, 323
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 2 cut(s) 7, 187
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 304
BbrPI CACGTG 1 cut(s) 198
BbvI GCAGC 1 cut(s) 249
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bse1I ACTGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 181
BssNAI GTATAC 2 cut(s) 123, 284
BssT1I CCWWGG 1 cut(s) 181
Bst1107I GTATAC 2 cut(s) 123, 284
Bst4CI ACNGT 2 cut(s) 18, 304
BstBAI YACGTR 1 cut(s) 198
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 249
BstZ17I GTATAC 2 cut(s) 123, 284
BtsCI GGATG 1 cut(s) 42
CfoI GCGC 1 cut(s) 267
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 1 cut(s) 206
CviKI_1 RGCY 1 cut(s) 206
CviQI GTAC 1 cut(s) 305
DraI TTTAAA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 181
Eco32I GATATC 1 cut(s) 103
Eco72I CACGTG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaiI YATR 5 cut(s) 21, 123, 238, 270, 284
FaqI GGGAC 1 cut(s) 242
FblI GTMKAC 2 cut(s) 122, 283
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 263
GlaI GCGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 273
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 123, 284
Hpy188I TCNGA 2 cut(s) 107, 178
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 2 cut(s) 123, 284
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 18, 304
HpyCH4IV ACGT 2 cut(s) 166, 197
HpyCH4V TGCA 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 166, 197
HspAI GCGC 1 cut(s) 265
KpnI GGTACC 1 cut(s) 308
LpnPI CCDG 6 cut(s) 47, 83, 120, 192, 303, 324
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 2 cut(s) 166, 197
MaeIII GTNAC 1 cut(s) 167
MluCI AATT 3 cut(s) 7, 187, 232
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 27, 196, 297, 318
MseI TTAA 3 cut(s) 12, 141, 252
NlaIV GGNNCC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 181
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 166
PspCI CACGTG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 306
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 12, 141, 252
SatI GCNGC 1 cut(s) 263
SchI GAGTC 1 cut(s) 182
SetI ASST 7 cut(s) 160, 169, 200, 261, 276, 289, 310
Sse9I AATT 3 cut(s) 7, 187, 232
SspI AATATT 1 cut(s) 52
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 18, 304
TaiI ACGT 2 cut(s) 169, 200
TaqI TCGA 1 cut(s) 73
TasI AATT 3 cut(s) 7, 187, 232
Tru1I TTAA 3 cut(s) 12, 141, 252
Tru9I TTAA 3 cut(s) 12, 141, 252
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 2 cut(s) 7, 187
XmiI GTMKAC 2 cut(s) 122, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.