Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

2806821 .. 2807410

Gene Structure 590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCAAAAGTTTCTTTTATTTTTTCTTGCTACCATGGCTATATCTGCCATGCTAGCAACCTCTGATAAACCAGTCGACCCTTTTTGCTATGATCCCTGCACATCCAACTTTGGAGAGGCGCAGTGCAAATCAGAGTGCGGCACAAAACACTTCAGGTTTGGACACTGCTTGACTCAAGGCGGCCAGTTACTTTGTTGCTGTAGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

6.67

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Defensin	PF24552	26 - 68	6.5e-11	Defensin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	2 cut(s)	138, 180
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	136
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	2 cut(s)	139, 181
BlsI	GCNGC	2 cut(s)	140, 182
BmtI	GCTAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	71, 184
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	71, 184
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	138, 180
BspANI	GGCC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	71, 184
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
BstSFI	CTRYAG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	101
BtsI	GCAGTG	2 cut(s)	128, 163
BtsIMutI	CAGTG	2 cut(s)	128, 163
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	34, 49
CviJI	RGCY	2 cut(s)	38, 183
CviKI_1	RGCY	2 cut(s)	38, 183
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 52
FaiI	YATR	4 cut(s)	35, 41, 50, 90
FatI	CATG	2 cut(s)	33, 48
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	139, 181
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	139, 181
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	139, 181
HaeIII	GGCC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	37, 52
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	64, 133
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	4, 99, 126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
Hsp92II	CATG	2 cut(s)	37, 52
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	4 cut(s)	84, 109, 139, 197
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	70, 109
MseI	TTAA	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	37, 52
PkrI	GCNGC	2 cut(s)	140, 182
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	2 cut(s)	139, 181
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	166
SetI	ASST	2 cut(s)	62, 158
SfcI	CTRYAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SsiI	CCGC	2 cut(s)	138, 180
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	2 cut(s)	141, 183
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TscAI	CASTG	2 cut(s)	128, 170
TspRI	CASTG	2 cut(s)	128, 170
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.