Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Reverse (-)

62058981 .. 62059524

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTTCTTCCACGGAGGGTCTGGTGCCCATGACCAGGGCTTTTCTCACTTCTTATTACGACACCTACAAATTCCTTCTTCTCTCCGATGACATCCCCCGCCTCTCCTCTGAGATTCGATCCCTCACTGCCGATTTGCTCTCCAACTCTCCGGCCACTCCACAGAGATTAGTAGTGGATGAACTAGAGAGTCCTCTGCCGCATAAAGTGGATGAGAGTATGTGGAAGAATCGGGAGTATATGGAAGAGATACTGGTGTTACCTTACATATTTTTGTTTCTTATTTTTGATGGTATGAGCAGCTTTAAGAACCTTCGAGTCCCGAGGATGCTCAGCTTGCTACTGTTTTCACTTGCCTGCATCATAAGTTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

4.89

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	2 cut(s)	100, 200
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	303, 336
AluI	AGCT	2 cut(s)	303, 336
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	30
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	200, 301
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	201, 302
Bme1390I	CCNGG	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	318, 369
Bpu1102I	GCTNAGC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	12, 36, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	3 cut(s)	12, 36, 323
BseGI	GGATG	4 cut(s)	93, 184, 217, 333
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	102, 346
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	2 cut(s)	100, 200
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	103, 345
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	12, 36, 323
BssMI	GATC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	338, 358
BstDEI	CTNAG	2 cut(s)	111, 332
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	93, 184, 217, 333
BstKTI	GATC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	93, 184, 217, 333
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	338, 358
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	5 cut(s)	5, 41, 155, 303, 336
CviKI_1	RGCY	5 cut(s)	5, 41, 155, 303, 336
DdeI	CTNAG	2 cut(s)	111, 332
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	34
FaiI	YATR	9 cut(s)	32, 204, 221, 240, 242, 269, 296, 365, 376
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	200, 301
FokI	GGATG	4 cut(s)	80, 191, 224, 340
Fsp4HI	GCNGC	2 cut(s)	200, 301
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	200, 301
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	4 cut(s)	115, 190, 229, 318
HpaII	CCGG	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	88, 112
Hpy188III	TCNNGA	2 cut(s)	233, 322
HpyAV	CCTTC	2 cut(s)	86, 323
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	111, 332
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	8, 22, 49, 165, 239, 370
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	2 cut(s)	318, 369
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	71, 238, 257
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	199, 327
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	10, 113, 118, 134, 204, 318
MseI	TTAA	2 cut(s)	306, 371
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	115, 229
PkrI	GCNGC	2 cut(s)	201, 302
PleI	GAGTC	2 cut(s)	198, 326
PpsI	GAGTC	2 cut(s)	198, 326
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	306, 371
SatI	GCNGC	2 cut(s)	200, 301
Sau3AI	GATC	1 cut(s)	119
SchI	GAGTC	2 cut(s)	199, 327
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	68, 265, 305, 315, 338
SfaNI	GCATC	2 cut(s)	318, 369
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	100, 200
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	118, 316
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	115, 229
Tru1I	TTAA	2 cut(s)	306, 371
Tru9I	TTAA	2 cut(s)	306, 371
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.