Rh5AG160100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001309
Physical Location & Seq
Forward (+)
17103803 .. 17111807
8005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG160100.1

Sequence Viewer

Length: 267 bp
ATGAACTCAGCTTCTTATACCCGAGACTCCATGGCCGTCGAGCAATACAAGGATCAAGGAGAAGAGAGATTAGCAGTGGATGAACTAGAGAGTCCTCTGCCGCATAAAGTGGATGAGAATATGTGGAAGAATCGGGAGCATATGGAAGAGCCTAAAGCTTCCAGTCGTGGAACTCAGCTCAAGGATATTCCGAGCGGATTGGTGTTGCAGATCGTATTCAGGACTCGAGTTTGTCATTGCAATGTTGATTCTTCTGGTAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.04

Weight (kDa)

5.11

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 2 cut(s) 101, 195
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 33
AluBI AGCT 3 cut(s) 11, 158, 178
AluI AGCT 3 cut(s) 11, 158, 178
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 60
Ama87I CYCGRG 2 cut(s) 21, 225
AoxI GGCC 1 cut(s) 33
AvaI CYCGRG 2 cut(s) 21, 225
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmeT110I CYCGRG 2 cut(s) 21, 225
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 2 cut(s) 235, 247
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 85, 118
BseMI GCAATG 2 cut(s) 235, 247
BseMII CTCAG 2 cut(s) 21, 188
BseNI ACTGG 1 cut(s) 162
BshFI GGCC 1 cut(s) 35
BsiHKCI CYCGRG 2 cut(s) 21, 225
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 2 cut(s) 21, 225
Bsp143I GATC 2 cut(s) 52, 210
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 101, 195
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 20, 187
BspPI GGATC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 141
BsrBI CCGCTC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 235, 247
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 52, 210
BssT1I CCWWGG 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 57, 141
BstDEI CTNAG 2 cut(s) 7, 174
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 85, 118
BstKTI GATC 2 cut(s) 55, 213
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 52, 210
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 85, 118
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 11, 35, 151, 158, 178
CviKI_1 RGCY 5 cut(s) 11, 35, 151, 158, 178
DdeI CTNAG 2 cut(s) 7, 174
DpnI GATC 2 cut(s) 54, 212
DpnII GATC 2 cut(s) 52, 210
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 57, 141
EarI CTCTTC 2 cut(s) 57, 141
Eco130I CCWWGG 1 cut(s) 30
Eco88I CYCGRG 2 cut(s) 21, 225
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 18, 32, 105, 122, 141, 143
FatI CATG 1 cut(s) 30
FauNDI CATATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 92, 125
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 5 cut(s) 26, 91, 130, 223, 248
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 134, 220
Hpy99I CGWCG 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 208, 240
HpyF3I CTNAG 2 cut(s) 7, 174
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 52, 210
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 175, 205, 240
MaeI CTAG 1 cut(s) 86
MalI GATC 2 cut(s) 54, 212
MbiI CCGCTC 1 cut(s) 195
MboI GATC 2 cut(s) 52, 210
MboII GAAGA 4 cut(s) 74, 139, 158, 243
MlyI GAGTC 3 cut(s) 20, 100, 217
MnlI CCTC 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 141
NdeII GATC 2 cut(s) 52, 210
NlaIII CATG 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 130, 248
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 3 cut(s) 20, 99, 217
PpsI GAGTC 3 cut(s) 20, 99, 217
PspXI VCTCGAGB 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 52, 210
SchI GAGTC 3 cut(s) 20, 100, 217
SetI ASST 3 cut(s) 13, 160, 180
Sfr274I CTCGAG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 179, 225
SmoI CTYRAG 2 cut(s) 179, 225
SsiI CCGC 2 cut(s) 101, 195
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 2 cut(s) 39, 226
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 130, 248
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 17, 96
TspRI CASTG 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 225
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.