Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Reverse (-)

22861991 .. 22865671

Gene Structure 3681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGATTTGCCAACAACATAGGCAAGTACCAGCTGGGGCGGACGATCGGAGAAGGTACTTTTGCCAAGGTGAAGCTGGCACTCGACAGCACTAATGGAAAGTATGTTGCCATCAAGATCCTCGATAAGCATATGGTCATGGAAACCAATCTCATGAATCAGGTGCAGAGAGAAATTAGAACAATGAAGCTTCTAAATCACTCCAACATTGTGCGCATACATGAGGTTATTGGTACAAAGACAAAAATCTACATAGCAATGGAATATGTATCTGGGGGACAACTCTCAGACAAATTGTTGTATTCCAAAACATTAAGTGAAGGGGAGGCAAGAAAACTTTTTCAGCAATTGATAGATGCAGTGGACTACTGTCACAACAAAGGTGTATATCACAGAGATCTAAAGCCAGAAAACTTGCTTTTGACCAGTAATGGAGACCTCAAAATATCTGATTTTGGACTTAGCGCATTGCGTAAGCCTGGTGATTTGTTGTCAACTAAATGTGGTTCTCCAAGCTACGTAGCTCCTGAGCTACTTGCAAATAAGGGCTATGATGGAGCAGCTGCAGATGTTTGGTCTTGTGGAGTGATTCTTTTCGAATTACTTGCTGGTCATCTGCCATTTGATGACTCTAGCCTGATGAATTTGTACAAAAAGATATCCAGAGCAGAATACAGATTTCCACATTGGTTTACAGAAAGCCAAAAGAAGCTGATCTCAGGAATATTTGATCCGAATCCCAAAAGGCGACTAACAATACCAGAAATTATCGAAAATGAATGGTTCCAAAAGGATTACATACCTACATGTGGAAATGATAGTGACGAGAAAATCTACTTAGATGATGTCAATGCTGCATTTGATTCAATCGAGGAAAATGTCAAGGAGACCAAAATTCCCAAATCATCAAGTTTTATAAATGCATTCCAATTGATAGCCATGTCAAATGATCTGGATTTATCAGGTCTTTTTGAGGAACAGTATAACAATAAGCAGAAAATAAGGCTTGGATCCCAGCACACAATCAATGAAACCATGAGGAAAATAGAAGCTGCTGCAATGGATGTGAGTCTTTCAGTAGCAAGAACAAACAACTTTAAGATCAAAATGCATGCGAAACAAGGGATGACTAGATGTTGTAGATCATATATTGATATGTCAGCAGAGGTGATCGAAGTGGCTCCCGCACATTGTGTTGTAGAAATATCAAGATCCGCAGGGGAGCTTGGACCATACAACGAATTCTGTAAGAGTCTAACAAGTCAGCTGACAGAGGAATTAGGTGATTCATCACAAATGCAAGAGTCTGAGGTACACCACATCGAAAGCAAAAGTATTCAAGAAAGTGAAGGGTCCGAGAAGACAAAATCCACGAGAATCGATGATCACCGTGGTTATTCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

469

Amino Acids

52.73

Weight (kDa)

6.15

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 262	4.3e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 258	9.6e-40	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	38 - 155	1.1e-07	ABC1 atypical kinase-like domain
Kinase-like	PF14531	112 - 211	5.1e-06	Kinase-like
NAF	PF03822	304 - 361	1.7e-16	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	917
Acc16I	TGCGCA	1 cut(s)	215
AciI	CCGC	3 cut(s)	40, 1185, 1215
AclWI	GGATC	5 cut(s)	112, 725, 1005, 1018, 1206
AcsI	RAATTY	3 cut(s)	643, 894, 1241
AdeI	CACNNNGTG	1 cut(s)	1193
AfaI	GTAC	5 cut(s)	29, 58, 235, 650, 1314
AfiI	CCNNNNNNNGG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	2 cut(s)	867, 1340
AjnI	CCWGG	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	429, 881
AlwI	GGATC	5 cut(s)	112, 725, 1005, 1018, 1206
ApeKI	GCWGC	5 cut(s)	560, 563, 854, 1052, 1055
ApoI	RAATTY	3 cut(s)	643, 894, 1241
AspLEI	GCGC	2 cut(s)	216, 467
AspS9I	GGNCC	2 cut(s)	1229, 1353
AsuHPI	GGTGA	5 cut(s)	82, 494, 1180, 1295, 1379
AsuII	TTCGAA	1 cut(s)	597
AvaII	GGWCC	2 cut(s)	1229, 1353
BamHI	GGATCC	1 cut(s)	1010
BauI	CACGAG	1 cut(s)	1372
BbsI	GAAGAC	1 cut(s)	1367
BbvI	GCAGC	5 cut(s)	550, 572, 841, 1039, 1042
BccI	CCATC	2 cut(s)	119, 548
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	1384
BcoDI	GTCTC	2 cut(s)	429, 881
BfaI	CTAG	2 cut(s)	633, 1131
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	5 cut(s)	561, 564, 855, 1053, 1056
BlsI	GCNGC	5 cut(s)	562, 565, 856, 1054, 1057
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	2 cut(s)	1229, 1353
BmgT120I	GGNCC	2 cut(s)	1229, 1353
BmiI	GGNNCC	4 cut(s)	785, 1012, 1182, 1354
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	1367
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	1380
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	2 cut(s)	429, 881
BsaJI	CCNNGG	2 cut(s)	66, 1390
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	3 cut(s)	264, 467, 1065
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	1380
BseDI	CCNNGG	2 cut(s)	66, 1390
BseGI	GGATG	2 cut(s)	1069, 1131
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	3 cut(s)	264, 467, 1065
BseMII	CTCAG	4 cut(s)	300, 519, 732, 1299
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	5 cut(s)	550, 572, 841, 1039, 1042
BseYI	CCCAGC	2 cut(s)	34, 1014
BsgI	GTGCAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	1380
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	429, 881
BsmFI	GGGAC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	923
Bso31I	GGTCTC	2 cut(s)	429, 881
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1407I	TGTACA	1 cut(s)	648
BspACI	CCGC	3 cut(s)	40, 1185, 1215
BspCNI	CTCAG	4 cut(s)	299, 520, 731, 1300
BspDI	ATCGAT	1 cut(s)	1380
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	4 cut(s)	785, 1012, 1182, 1354
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	5 cut(s)	112, 725, 1005, 1018, 1206
BspT104I	TTCGAA	1 cut(s)	597
BspTNI	GGTCTC	2 cut(s)	429, 881
BsrDI	GCAATG	3 cut(s)	264, 467, 1065
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	66, 1390
BssSI	CACGAG	1 cut(s)	1372
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	1372
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	371, 981, 1391
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	78, 1113
BstDEI	CTNAG	6 cut(s)	286, 461, 528, 718, 838, 1308
BstDSI	CCRYGG	1 cut(s)	1390
BstF5I	GGATG	2 cut(s)	1069, 1131
BstHHI	GCGC	2 cut(s)	216, 467
BstMAI	GTCTC	2 cut(s)	429, 881
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	2 cut(s)	810, 1115
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	564
BstSNI	TACGTA	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	550, 572, 841, 1039, 1042
BstV2I	GAAGAC	1 cut(s)	1367
BstX2I	RGATCY	4 cut(s)	117, 397, 1010, 1211
BstYI	RGATCY	4 cut(s)	117, 397, 1010, 1211
Bsu15I	ATCGAT	1 cut(s)	1380
BsuTUI	ATCGAT	1 cut(s)	1380
BtgI	CCRYGG	1 cut(s)	1390
BtsCI	GGATG	2 cut(s)	1069, 1131
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	78, 1113
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	2 cut(s)	216, 467
Cfr13I	GGNCC	2 cut(s)	1229, 1353
ClaI	ATCGAT	1 cut(s)	1380
Csp6I	GTAC	5 cut(s)	28, 57, 234, 649, 1313
CviAII	CATG	7 cut(s)	139, 154, 221, 807, 940, 1036, 1112
CviQI	GTAC	5 cut(s)	28, 57, 234, 649, 1313
DdeI	CTNAG	6 cut(s)	286, 461, 528, 718, 838, 1308
DraIII	CACNNNGTG	1 cut(s)	1193
EciI	GGCGGA	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	2 cut(s)	429, 881
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	1229, 1353
EcoRI	GAATTC	1 cut(s)	1241
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	2 cut(s)	925, 1113
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	7 cut(s)	142, 157, 224, 810, 943, 1039, 1115
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	7 cut(s)	138, 153, 220, 806, 939, 1035, 1111
FauI	CCCGC	1 cut(s)	1192
FauNDI	CATATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	1384
Fnu4HI	GCNGC	5 cut(s)	561, 564, 855, 1053, 1056
FokI	GGATG	2 cut(s)	1076, 1138
Fsp4HI	GCNGC	5 cut(s)	561, 564, 855, 1053, 1056
FspAI	RTGCGCAY	1 cut(s)	215
FspBI	CTAG	2 cut(s)	633, 1131
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	2 cut(s)	215, 466
GluI	GCNGC	5 cut(s)	561, 564, 855, 1053, 1056
GsaI	CCCAGC	2 cut(s)	38, 1018
HhaI	GCGC	2 cut(s)	216, 467
Hin1II	CATG	7 cut(s)	142, 157, 224, 810, 943, 1039, 1115
Hin6I	GCGC	2 cut(s)	214, 465
HinP1I	GCGC	2 cut(s)	214, 465
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	188
HphI	GGTGA	5 cut(s)	82, 494, 1180, 1295, 1379
Hpy166II	GTNNAC	4 cut(s)	364, 495, 693, 1315
Hpy188I	TCNGA	6 cut(s)	50, 289, 451, 735, 1309, 1357
Hpy188III	TCNNGA	9 cut(s)	115, 154, 527, 663, 720, 953, 1209, 1340, 1407
Hpy8I	GTNNAC	4 cut(s)	364, 495, 693, 1315
HpyAV	CCTTC	3 cut(s)	47, 314, 1343
HpyCH4III	ACNGT	3 cut(s)	371, 981, 1391
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	9 cut(s)	166, 359, 539, 566, 857, 923, 1058, 1111, 1300
HpyF3I	CTNAG	6 cut(s)	286, 461, 528, 718, 838, 1308
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	7 cut(s)	142, 157, 224, 810, 943, 1039, 1115
HspAI	GCGC	2 cut(s)	214, 465
Ksp22I	TGATCA	1 cut(s)	1384
LmnI	GCTCC	4 cut(s)	529, 557, 1186, 1222
Lsp1109I	GCAGC	5 cut(s)	550, 572, 841, 1039, 1042
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	633, 1131
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	371, 821
MboII	GAAGA	2 cut(s)	1372, 1395
MfeI	CAATTG	2 cut(s)	347, 929
MflI	RGATCY	4 cut(s)	117, 397, 1010, 1211
MlyI	GAGTC	4 cut(s)	623, 1078, 1261, 1313
MmeI	TCCRAC	1 cut(s)	228
Mph1103I	ATGCAT	2 cut(s)	925, 1113
MseI	TTAA	2 cut(s)	314, 1098
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	3 cut(s)	34, 563, 1267
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	2 cut(s)	347, 929
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	132
NlaIII	CATG	7 cut(s)	142, 157, 224, 810, 943, 1039, 1115
NlaIV	GGNNCC	4 cut(s)	785, 1012, 1182, 1354
NmuCI	GTSAC	2 cut(s)	371, 821
NsbI	TGCGCA	1 cut(s)	215
NsiI	ATGCAT	2 cut(s)	925, 1113
NspI	RCATGY	2 cut(s)	810, 1115
NspV	TTCGAA	1 cut(s)	597
PaeI	GCATGC	1 cut(s)	1115
PagI	TCATGA	1 cut(s)	153
PciI	ACATGT	1 cut(s)	806
PctI	GAATGC	1 cut(s)	923
PfeI	GAWTC	6 cut(s)	157, 589, 736, 863, 1286, 1377
PkrI	GCNGC	5 cut(s)	562, 565, 856, 1054, 1057
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	4 cut(s)	623, 1077, 1260, 1312
PpsI	GAGTC	4 cut(s)	623, 1077, 1260, 1312
Ppu21I	YACGTR	1 cut(s)	520
PscI	ACATGT	1 cut(s)	806
PshAI	GACNNNNGTC	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	917
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	2 cut(s)	34, 1014
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	4 cut(s)	785, 1012, 1182, 1354
PspPI	GGNCC	2 cut(s)	1229, 1353
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	4 cut(s)	117, 397, 1010, 1211
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	3 cut(s)	34, 563, 1267
RsaI	GTAC	5 cut(s)	29, 58, 235, 650, 1314
RsaNI	GTAC	5 cut(s)	28, 57, 234, 649, 1313
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	314, 1098
SatI	GCNGC	5 cut(s)	561, 564, 855, 1053, 1056
Sau96I	GGNCC	2 cut(s)	1229, 1353
SchI	GAGTC	4 cut(s)	623, 1078, 1261, 1313
ScrFI	CCNGG	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	2 cut(s)	1229, 1353
SmiMI	CAYNNNNRTG	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	520
SphI	GCATGC	1 cut(s)	1115
SsiI	CCGC	3 cut(s)	40, 1185, 1215
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	2 cut(s)	633, 1131
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	371, 981, 1391
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	8 cut(s)	84, 123, 597, 771, 870, 1173, 1323, 1380
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	6 cut(s)	157, 589, 736, 863, 1286, 1377
Tru1I	TTAA	2 cut(s)	314, 1098
Tru9I	TTAA	2 cut(s)	314, 1098
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	371, 821
TseI	GCWGC	5 cut(s)	560, 563, 854, 1052, 1055
Tsp45I	GTSAC	2 cut(s)	371, 821
TspDTI	ATGAA	7 cut(s)	170, 200, 656, 792, 1044, 1278, 1389
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	1229, 1353
XapI	RAATTY	3 cut(s)	643, 894, 1241
XceI	RCATGY	2 cut(s)	810, 1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	633, 1131
Zsp2I	ATGCAT	2 cut(s)	925, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.