Rroxscaffold_2G00117840

Non-specific serine threonine protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
48460630 .. 48467519
6890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117840.1

Sequence Viewer

Length: 264 bp
ATGATCCCAGAAAACTTGCTTTTGACTAGTAATGGAGATCTCAAAATATCTGATTTTGGACTTAGTGCATTGAGTAAGCCTGGTGACTTGTTGTCAACTAAATCTGGTTCTCCAAGCTATGTAGCTCCTGAACTACTTGTAAATAAGGGCTATGATGGAGCAGCTGCAGATGTTTCGTCTTGTGGAGTGATTCTTTTCGAATTACTTGCTGGTCATCTGCCATTTGATGACTCTAGCCCGATGAATTTGTACAAAAAGGTATAA

Protein Analysis

87

Amino Acids

9.12

Weight (kDa)

4.56

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 84 3.6e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 86 1.3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 117, 125, 164
AluI AGCT 3 cut(s) 117, 125, 164
ApeKI GCWGC 2 cut(s) 161, 164
ApoI RAATTY 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 198
BbvI GCAGC 2 cut(s) 151, 173
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 4 cut(s) 156, 188, 190, 222
BciT130I CCWGG 1 cut(s) 81
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 2 cut(s) 27, 234
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 162, 165
BlsI GCNGC 2 cut(s) 163, 166
Bme1390I CCNGG 1 cut(s) 81
BmeRI GACNNNNNGTC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 151, 173
Bsp119I TTCGAA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 2 cut(s) 3, 37
BspMAI CTGCAG 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 249
BssMI GATC 2 cut(s) 3, 37
Bst2UI CCWGG 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 62
BstKTI GATC 2 cut(s) 6, 40
BstMBI GATC 2 cut(s) 3, 37
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 151, 173
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 6 cut(s) 79, 117, 125, 150, 164, 237
CviKI_1 RGCY 6 cut(s) 79, 117, 125, 150, 164, 237
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 5, 39
DpnII GATC 2 cut(s) 3, 37
DriI GACNNNNNGTC 1 cut(s) 91
Eam1105I GACNNNNNGTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 79
FaiI YATR 3 cut(s) 120, 153, 262
Fnu4HI GCNGC 2 cut(s) 162, 165
Fsp4HI GCNGC 2 cut(s) 162, 165
FspBI CTAG 2 cut(s) 27, 234
GluI GCNGC 2 cut(s) 162, 165
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 2 cut(s) 190, 230
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 68, 167
HpyF3I CTNAG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 3, 37
LmnI GCTCC 2 cut(s) 130, 158
LpnPI CCDG 6 cut(s) 21, 66, 90, 93, 141, 195
Lsp1109I GCAGC 2 cut(s) 151, 173
MaeI CTAG 2 cut(s) 27, 234
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 5, 39
MboI GATC 2 cut(s) 3, 37
MflI RGATCY 1 cut(s) 37
MluCI AATT 2 cut(s) 200, 244
MlyI GAGTC 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NdeII GATC 2 cut(s) 3, 37
NmuCI GTSAC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 198
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 163, 166
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SatI GCNGC 2 cut(s) 162, 165
Sau3AI GATC 2 cut(s) 3, 37
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 81
SetI ASST 4 cut(s) 119, 127, 166, 261
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 2 cut(s) 200, 244
SspMI CTAG 2 cut(s) 27, 234
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 200, 244
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 1 cut(s) 190
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 161, 164
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 257
XapI RAATTY 1 cut(s) 244
XspI CTAG 2 cut(s) 27, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.