FvH4_4g08900

Non-specific serine threonine protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
9795846 .. 9799859
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08900.t3

Sequence Viewer

Length: 1398 bp
ATGGGGTTTGCCAACAACGTAGGCAAGTACCAGCTGGGGCGGACTATCGGAGAAGGTACTTTCGCAAAGGTGAAGCTGGCTCTGGACAGCACAAATGGAAAGTATGTTGCCGTCAAGATCCTTGATAAGCATATGGTCATGGAAACCAATCTCATGAATCAGGTGCAGAGAGAAATTAGGACAATGAAGCTTCTAAATCACTCAAACATTGTGCGTATACATGAGGTTATTGGTACAAAGACAAAAATCTACATAGCAATGGAATATGTTTCTGGGGGACAACTGTCAGACAAATTGTCGTACGCCAAAACATTAAGTGAAGGAGAGGCAAGAAAGATTTTTCAGCAATTGATAGATGCAGTCGACTACTGTCATAACAAAGGTGTATATCACAGAGATCTAAAGCCAGAAAACTTGCTTTTGACCAGTAATGGAAACCTGAAGATATCTGATTTCGGACTTAGCGCATTGCGAAAGCCTGGTGACTTGTTGTCAACTAAATGTGGTTCTCCAAGTTATGTAGCTCCTGAGCTACTTGTAAATAAAGGCTATGATGGAGCAGCTGCAGATGTTTGGTCTTGTGGAGTGATTCTTTTTGAAATACTTGCTGGTCATCTGCCATTTGATGACTCTAGCCTGATGAATTTGTACAAAAAGATATCCACAGCAGAGTACACATTTCCACAATGGTTTACAGAAAGCCAAAAGAAGCTGATCTCAGGAATATTTGATCCAAATCCCAAAACGCGACTAACGATTTCAGAAATTATTGAAAATGAATGGTTTCAAAAGGATTACGTGCCTACATGTGGAAATGATAGTGATGAGAAAATCTACTTAGATGATGTCAATGCTGCATTTGATTCAATTGAGGAAAATGTCAAGGAGACCAAAATTCCCAAATCATCAAGTTTTATAAATGCTTTCCAGTTGATAGCCATGTCAAATGATCTGGATTTATCAGGTCTTTTCGAGGAACAGGATGAGAATAAGCACAAAGTAAGGCTTGGATCCCAGCACACAATCAGTGAAACCATAAAGAAAATAGAAGCTGCTGCAATGGATGTGAGTCTTTCAATAGCAAGAACAAACAACTTTAAGATAAAAATGCATGCGAAACAAGGAATGACTAGATGTTGTAGATCATATATTGATATGTCGGCAGAGGTGATCGAAGTAGCTCCCACACATTGTGTTGTAGAAATATCAAGATCTGCAGGAGAGCTTGGACCGTACAACGAATTCTGTAAGAGTCTAACAAGTCAGCTGACAGAGGAATTAGGTGATTCATCCCAAATGCAAGAGAATGAGGTAGACCACATTGAAAGCAAAAGTGAAGGGTCTCAGGAGACAAAATCCACGATAATCGATGACCATCGTGGTTATTCATCTTCTTGA

Protein Analysis

466

Amino Acids

51.93

Weight (kDa)

5.57

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 36 - 223 1.2e-54 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 37 - 219 5.6e-27 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 73 - 171 8e-06 Kinase-like
NAF PF03822 265 - 322 4.8e-16 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
AccI GTMKAC 3 cut(s) 217, 363, 1314
AccII CGCG 1 cut(s) 748
AciI CCGC 1 cut(s) 40
AclWI GGATC 4 cut(s) 112, 725, 1005, 1018
AcsI RAATTY 3 cut(s) 643, 894, 1241
AcuI CTGAAG 1 cut(s) 461
AdeI CACNNNGTG 1 cut(s) 1193
AfaI GTAC 7 cut(s) 29, 58, 235, 302, 650, 674, 1235
AfiI CCNNNNNNNGG 1 cut(s) 809
AflIII ACRYGT 1 cut(s) 806
AgsI TTSAA 6 cut(s) 599, 773, 788, 867, 1077, 1325
AhdI GACNNNNNGTC 2 cut(s) 295, 490
AjnI CCWGG 1 cut(s) 478
Alw26I GTCTC 3 cut(s) 881, 1343, 1347
AlwI GGATC 4 cut(s) 112, 725, 1005, 1018
ApeKI GCWGC 5 cut(s) 560, 563, 854, 1052, 1055
ApoI RAATTY 3 cut(s) 643, 894, 1241
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 1229
AsuHPI GGTGA 4 cut(s) 82, 494, 1180, 1295
AvaII GGWCC 1 cut(s) 1229
BamHI GGATCC 1 cut(s) 1010
BbvI GCAGC 5 cut(s) 550, 572, 841, 1039, 1042
BccI CCATC 2 cut(s) 548, 1383
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 881, 1343, 1347
BfaI CTAG 2 cut(s) 633, 1131
BfmI CTRYAG 2 cut(s) 564, 1215
BglII AGATCT 2 cut(s) 397, 1211
BisI GCNGC 5 cut(s) 561, 564, 855, 1053, 1056
BlsI GCNGC 5 cut(s) 562, 565, 856, 1054, 1057
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 1229
BmeRI GACNNNNNGTC 2 cut(s) 295, 490
BmgT120I GGNCC 1 cut(s) 1229
BmiI GGNNCC 1 cut(s) 1012
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 1 cut(s) 346
BoxI GACNNNNGTC 2 cut(s) 283, 369
Bpu10I CCTNAGC 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 1368
BsaAI YACGTR 1 cut(s) 799
BsaBI GATNNNNATC 2 cut(s) 735, 1374
BsaI GGTCTC 2 cut(s) 881, 1347
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse1I ACTGG 2 cut(s) 426, 928
Bse3DI GCAATG 3 cut(s) 264, 467, 1065
Bse8I GATNNNNATC 2 cut(s) 735, 1374
BseBI CCWGG 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 1368
BseGI GGATG 3 cut(s) 988, 1069, 1289
BseJI GATNNNNATC 2 cut(s) 735, 1374
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMI GCAATG 3 cut(s) 264, 467, 1065
BseMII CTCAG 3 cut(s) 519, 732, 1358
BseNI ACTGG 2 cut(s) 426, 928
BseXI GCAGC 5 cut(s) 550, 572, 841, 1039, 1042
BseYI CCCAGC 2 cut(s) 34, 1014
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 748
BshVI ATCGAT 1 cut(s) 1368
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 3 cut(s) 881, 1343, 1347
BsmFI GGGAC 1 cut(s) 291
Bso31I GGTCTC 2 cut(s) 881, 1347
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
BspACI CCGC 1 cut(s) 40
BspCNI CTCAG 3 cut(s) 520, 731, 1357
BspDI ATCGAT 1 cut(s) 1368
BspFNI CGCG 1 cut(s) 748
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 1012
BspMAI CTGCAG 2 cut(s) 568, 1219
BspPI GGATC 4 cut(s) 112, 725, 1005, 1018
BspTNI GGTCTC 2 cut(s) 881, 1347
BsrDI GCAATG 3 cut(s) 264, 467, 1065
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 2 cut(s) 426, 928
BssMI GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
BssNAI GTATAC 1 cut(s) 218
Bst1107I GTATAC 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 285, 371, 1233
BstAUI TGTACA 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 799
BstC8I GCNNGC 2 cut(s) 78, 1113
BstDEI CTNAG 5 cut(s) 461, 528, 718, 838, 1344
BstF5I GGATG 3 cut(s) 988, 1069, 1289
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 9 cut(s) 120, 400, 717, 733, 952, 1013, 1145, 1173, 1214
BstMAI GTCTC 3 cut(s) 881, 1343, 1347
BstMBI GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 2 cut(s) 810, 1115
BstPAI GACNNNNGTC 2 cut(s) 283, 369
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 2 cut(s) 564, 1215
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 5 cut(s) 550, 572, 841, 1039, 1042
BstX2I RGATCY 4 cut(s) 117, 397, 1010, 1211
BstYI RGATCY 4 cut(s) 117, 397, 1010, 1211
BstZ17I GTATAC 1 cut(s) 218
Bsu15I ATCGAT 1 cut(s) 1368
BsuTUI ATCGAT 1 cut(s) 1368
BtsCI GGATG 3 cut(s) 988, 1069, 1289
BtsIMutI CAGTG 1 cut(s) 1033
Cac8I GCNNGC 2 cut(s) 78, 1113
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 1229
ClaI ATCGAT 1 cut(s) 1368
Csp6I GTAC 7 cut(s) 28, 57, 234, 301, 649, 673, 1234
CviAII CATG 6 cut(s) 139, 154, 221, 807, 940, 1112
CviQI GTAC 7 cut(s) 28, 57, 234, 301, 649, 673, 1234
DdeI CTNAG 5 cut(s) 461, 528, 718, 838, 1344
DpnI GATC 9 cut(s) 119, 399, 716, 732, 951, 1012, 1144, 1172, 1213
DpnII GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
DraIII CACNNNGTG 1 cut(s) 1193
DriI GACNNNNNGTC 2 cut(s) 295, 490
Eam1105I GACNNNNNGTC 2 cut(s) 295, 490
EciI GGCGGA 1 cut(s) 55
Eco31I GGTCTC 2 cut(s) 881, 1347
Eco32I GATATC 2 cut(s) 447, 660
Eco47I GGWCC 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 2 cut(s) 447, 660
EcoT22I ATGCAT 1 cut(s) 1113
FaeI CATG 6 cut(s) 142, 157, 224, 810, 943, 1115
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 1 cut(s) 291
FatI CATG 6 cut(s) 138, 153, 220, 806, 939, 1111
FauNDI CATATG 1 cut(s) 132
FblI GTMKAC 3 cut(s) 217, 363, 1314
Fnu4HI GCNGC 5 cut(s) 561, 564, 855, 1053, 1056
FokI GGATG 3 cut(s) 995, 1076, 1276
Fsp4HI GCNGC 5 cut(s) 561, 564, 855, 1053, 1056
FspBI CTAG 2 cut(s) 633, 1131
GlaI GCGC 1 cut(s) 466
GluI GCNGC 5 cut(s) 561, 564, 855, 1053, 1056
GsaI CCCAGC 2 cut(s) 38, 1018
HhaI GCGC 1 cut(s) 467
Hin1II CATG 6 cut(s) 142, 157, 224, 810, 943, 1115
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HincII GTYRAC 2 cut(s) 364, 495
HindII GTYRAC 2 cut(s) 364, 495
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 7 cut(s) 157, 589, 629, 863, 1069, 1252, 1286
HphI GGTGA 4 cut(s) 82, 494, 1180, 1295
Hpy166II GTNNAC 6 cut(s) 218, 364, 495, 675, 693, 1315
Hpy188I TCNGA 5 cut(s) 50, 289, 451, 458, 763
Hpy188III TCNNGA 9 cut(s) 83, 115, 154, 527, 720, 953, 1209, 1346, 1395
Hpy8I GTNNAC 6 cut(s) 218, 364, 495, 675, 693, 1315
HpyAV CCTTC 3 cut(s) 47, 314, 1331
HpyCH4III ACNGT 3 cut(s) 285, 371, 1233
HpyCH4IV ACGT 2 cut(s) 18, 798
HpyCH4V TGCA 8 cut(s) 166, 359, 566, 857, 1058, 1111, 1217, 1300
HpyF3I CTNAG 5 cut(s) 461, 528, 718, 838, 1344
HpySE526I ACGT 2 cut(s) 18, 798
Hsp92II CATG 6 cut(s) 142, 157, 224, 810, 943, 1115
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
LmnI GCTCC 3 cut(s) 529, 557, 1186
Lsp1109I GCAGC 5 cut(s) 550, 572, 841, 1039, 1042
LweI GCATC 1 cut(s) 346
MaeI CTAG 2 cut(s) 633, 1131
MaeII ACGT 2 cut(s) 18, 798
MaeIII GTNAC 1 cut(s) 482
MalI GATC 9 cut(s) 119, 399, 716, 732, 951, 1012, 1144, 1172, 1213
MboI GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
MboII GAAGA 2 cut(s) 454, 1383
MfeI CAATTG 2 cut(s) 347, 867
MflI RGATCY 4 cut(s) 117, 397, 1010, 1211
MluCI AATT 9 cut(s) 174, 293, 347, 643, 765, 867, 894, 1241, 1277
MlyI GAGTC 3 cut(s) 623, 1078, 1261
MnlI CCTC 7 cut(s) 217, 319, 865, 967, 1159, 1267, 1303
Mph1103I ATGCAT 1 cut(s) 1113
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 2 cut(s) 314, 1098
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 3 cut(s) 34, 563, 1267
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 2 cut(s) 347, 867
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 748
NdeI CATATG 1 cut(s) 132
NdeII GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
NlaIII CATG 6 cut(s) 142, 157, 224, 810, 943, 1115
NlaIV GGNNCC 1 cut(s) 1012
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 2 cut(s) 810, 1115
PaeI GCATGC 1 cut(s) 1115
PagI TCATGA 1 cut(s) 153
PciI ACATGT 1 cut(s) 806
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 4 cut(s) 157, 589, 863, 1286
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 5 cut(s) 562, 565, 856, 1054, 1057
PleI GAGTC 3 cut(s) 623, 1077, 1260
PpsI GAGTC 3 cut(s) 623, 1077, 1260
Ppu21I YACGTR 1 cut(s) 799
PscI ACATGT 1 cut(s) 806
PshAI GACNNNNGTC 2 cut(s) 283, 369
PsiI TTATAA 1 cut(s) 917
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 2 cut(s) 34, 1014
PspGI CCWGG 1 cut(s) 478
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 1012
PspPI GGNCC 1 cut(s) 1229
PstI CTGCAG 2 cut(s) 568, 1219
PsuI RGATCY 4 cut(s) 117, 397, 1010, 1211
PvuII CAGCTG 3 cut(s) 34, 563, 1267
RsaI GTAC 7 cut(s) 29, 58, 235, 302, 650, 674, 1235
RsaNI GTAC 7 cut(s) 28, 57, 234, 301, 649, 673, 1234
RseI CAYNNNNRTG 1 cut(s) 257
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 314, 1098
SatI GCNGC 5 cut(s) 561, 564, 855, 1053, 1056
Sau3AI GATC 9 cut(s) 117, 397, 714, 730, 949, 1010, 1142, 1170, 1211
Sau96I GGNCC 1 cut(s) 1229
SchI GAGTC 3 cut(s) 623, 1078, 1261
ScrFI CCNGG 1 cut(s) 480
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 2 cut(s) 564, 1215
SinI GGWCC 1 cut(s) 1229
SmiMI CAYNNNNRTG 1 cut(s) 257
SphI GCATGC 1 cut(s) 1115
Sse9I AATT 9 cut(s) 174, 293, 347, 643, 765, 867, 894, 1241, 1277
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 726
SspMI CTAG 2 cut(s) 633, 1131
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 3 cut(s) 285, 371, 1233
TaiI ACGT 2 cut(s) 21, 801
TaqI TCGA 4 cut(s) 363, 972, 1173, 1368
TasI AATT 9 cut(s) 174, 293, 347, 643, 765, 867, 894, 1241, 1277
TatI WGTACW 2 cut(s) 648, 672
TfiI GAWTC 4 cut(s) 157, 589, 863, 1286
Tru1I TTAA 2 cut(s) 314, 1098
Tru9I TTAA 2 cut(s) 314, 1098
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 5 cut(s) 560, 563, 854, 1052, 1055
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 6 cut(s) 170, 200, 656, 792, 1278, 1377
TspRI CASTG 1 cut(s) 1033
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 3 cut(s) 643, 894, 1241
XceI RCATGY 2 cut(s) 810, 1115
XmiI GTMKAC 3 cut(s) 217, 363, 1314
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 2 cut(s) 633, 1131
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.