Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Forward (+)

54536439 .. 54540678

Gene Structure 4240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGTACCGCAAAGTCGCCGAGGATGAGGACCCGGGTCGGGAAGTACGAGCTGGGCAAGACTCTCGGGGAGGGCACCTTTGCCAAGGTCAAGTTCGCCAAGAACACCGAAACCGGGCAGTGCGTCGCCATCAAAATCCTTGATCGTGAGCAAGTACTCAAGCACAAGATGGTTGAACATATAAAAAGAGAGATATCGACAATGAAGCTGATCAAGCACCCGAATGTCACGCAAATGTTTGAGGTTATGGCTAGCAAAACTAAGATCTACATTGTTCTCGAGTTTGTTGATGGGGGTGAGCTCTTTGACGAAATAGCCAAAAATGGGAGACTGAAAGAGGACGATGCCAGGAGATACTTCCAGCAGCTCATTAATGCTGTGGATTACTGTCATAGTAGAGGCGTGTACCATAGGGATTTAAAGCCAGAAAATCTTCTCTTAGATTCATACGGTGTCCTTAAAATATCAGATTTTGGATTGAGTACATTTGAACAAAAAGTGCGGGAAGATGGGCTGCTTCATACTGCCTGTGGGACTCCAAATTATGTTGCTCCTGAGGTTCTCAATAATAAAGGATACGAGGGTACATCATCTGATGTTTGGTCTTGCGGGGTGATCCTCTTTGTACTTATGGGTGGTTACCTGCCGTTTGATGAACCAAATCTCATAGCTCTGTACCGAAAAATATGCAAAGCTGAATTTTCATGTCCATCATGGTTTTCATCCGGTGCAAAGAAACTGATACACCGTATACTTGATCCAAACCCAGCTACGAGGATGACAATTCCCGAGATATTAGAAAATGAATGGTTTAAGAAAGATTACAAGCCAGCACAGTTTCAAGAAGAAGACAATGTAAATCTTGATGATGTGGATGCTGTTTTCAACAAATCAAAGGAAAATCTTGTAACAGAAAGGAAGGAGAAACCTACATCAATGAATGCTTTTGAGCTTATTTCGAGGTCACAGAGTTTCAATCTAGAAAATTTATTTGAGAAGCAGATGGTATGTAGCATACAATGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

342

Amino Acids

39.13

Weight (kDa)

7.55

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 271	2.2e-75	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 267	7.5e-39	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	113 - 220	6.7e-07	Kinase-like
NAF	PF03822	310 - 336	4.3e-09	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	751
AciI	CCGC	3 cut(s)	9, 502, 609
AclWI	GGATC	2 cut(s)	610, 752
AcsI	RAATTY	2 cut(s)	698, 985
AfaI	GTAC	8 cut(s)	7, 47, 156, 407, 484, 586, 627, 677
AfiI	CCNNNNNNNGG	3 cut(s)	39, 114, 324
AgsI	TTSAA	5 cut(s)	176, 491, 842, 886, 976
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	8 cut(s)	52, 208, 301, 367, 671, 695, 770, 952
AluI	AGCT	8 cut(s)	52, 208, 301, 367, 671, 695, 770, 952
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	610, 752
Ama87I	CYCGRG	4 cut(s)	33, 65, 278, 788
ApeKI	GCWGC	2 cut(s)	364, 514
ApoI	RAATTY	2 cut(s)	698, 985
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	3 cut(s)	34, 35, 115
AsuHPI	GGTGA	2 cut(s)	308, 625
AsuNHI	GCTAGC	1 cut(s)	251
AvaI	CYCGRG	4 cut(s)	33, 65, 278, 788
AvaII	GGWCC	1 cut(s)	30
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	568, 601
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	376, 501
BccI	CCATC	6 cut(s)	137, 163, 284, 503, 718, 997
BceAI	ACGGC	1 cut(s)	631
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 669, 703
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	569
BclI	TGATCA	1 cut(s)	210
BcnI	CCSGG	3 cut(s)	34, 35, 115
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	252, 980
BfuAI	ACCTGC	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	2 cut(s)	365, 515
BlsI	GCNGC	2 cut(s)	366, 516
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	4 cut(s)	34, 35, 115, 349
Bme18I	GGWCC	1 cut(s)	30
BmeT110I	CYCGRG	4 cut(s)	33, 65, 278, 788
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	32, 76
BmrFI	CCNGG	4 cut(s)	34, 35, 115, 349
BmsI	GCATC	2 cut(s)	334, 865
BmtI	GCTAGC	1 cut(s)	255
BoxI	GACNNNNGTC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	3 cut(s)	34, 35, 115
BsaJI	CCNNGG	3 cut(s)	20, 33, 84
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 114, 324
Bse21I	CCTNAGG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	3 cut(s)	20, 33, 84
BseGI	GGATG	4 cut(s)	30, 722, 783, 880
BseLI	CCNNNNNNNGG	3 cut(s)	39, 114, 324
BseMII	CTCAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	376, 501
BseYI	CCCAGC	2 cut(s)	52, 766
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	4 cut(s)	33, 65, 278, 788
BsiSI	CCGG	3 cut(s)	34, 114, 726
BslFI	GGGAC	2 cut(s)	547, 1008
BslI	CCNNNNNNNGG	3 cut(s)	39, 114, 324
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	547, 1008
BsmI	GAATGC	1 cut(s)	946
BsoBI	CYCGRG	4 cut(s)	33, 65, 278, 788
Bsp1286I	GDGCHC	2 cut(s)	77, 303
Bsp143I	GATC	5 cut(s)	142, 210, 264, 615, 757
BspACI	CCGC	3 cut(s)	9, 502, 609
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	32, 76
BspMI	ACCTGC	1 cut(s)	651
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	610, 752
BspT107I	GGYRCC	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	20, 33, 84
BssMI	GATC	5 cut(s)	142, 210, 264, 615, 757
BssNAI	GTATAC	1 cut(s)	752
BssT1I	CCWWGG	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	752
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	4 cut(s)	389, 452, 749, 837
BstC8I	GCNNGC	2 cut(s)	253, 831
BstDEI	CTNAG	3 cut(s)	261, 439, 555
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	4 cut(s)	30, 722, 783, 880
BstKTI	GATC	5 cut(s)	145, 213, 267, 618, 760
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	142, 210, 264, 615, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	4 cut(s)	32, 33, 113, 347
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	376, 501
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZ17I	GTATAC	1 cut(s)	752
Bsu36I	CCTNAGG	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	569
BtsCI	GGATG	4 cut(s)	30, 722, 783, 880
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	253, 831
Cfr13I	GGNCC	1 cut(s)	30
Cfr9I	CCCGGG	1 cut(s)	33
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	8 cut(s)	6, 46, 155, 406, 483, 585, 626, 676
CviAII	CATG	2 cut(s)	705, 714
CviQI	GTAC	8 cut(s)	6, 46, 155, 406, 483, 585, 626, 676
DdeI	CTNAG	3 cut(s)	261, 439, 555
DpnI	GATC	5 cut(s)	144, 212, 266, 617, 759
DpnII	GATC	5 cut(s)	142, 210, 264, 615, 757
DraI	TTTAAA	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	555
Eco88I	CYCGRG	4 cut(s)	33, 65, 278, 788
Eco91I	GGTNACC	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	708, 717
FaqI	GGGAC	2 cut(s)	547, 1008
FatI	CATG	2 cut(s)	704, 713
FauI	CCCGC	2 cut(s)	495, 602
FbaI	TGATCA	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	365, 515
FokI	GGATG	4 cut(s)	37, 709, 790, 887
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	365, 515
FspBI	CTAG	2 cut(s)	252, 980
GluI	GCNGC	2 cut(s)	365, 515
GsaI	CCCAGC	2 cut(s)	56, 770
HapII	CCGG	3 cut(s)	34, 114, 726
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	708, 717
HinfI	GANTC	3 cut(s)	61, 443, 535
HpaII	CCGG	3 cut(s)	34, 114, 726
HphI	GGTGA	2 cut(s)	308, 625
Hpy166II	GTNNAC	2 cut(s)	406, 752
Hpy188I	TCNGA	2 cut(s)	469, 595
Hpy188III	TCNNGA	8 cut(s)	40, 146, 278, 554, 788, 842, 863, 980
Hpy8I	GTNNAC	2 cut(s)	406, 752
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	913
HpyCH4III	ACNGT	4 cut(s)	389, 452, 749, 837
HpyCH4V	TGCA	2 cut(s)	690, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	261, 439, 555
Hsp92II	CATG	2 cut(s)	708, 717
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	142, 210, 264, 615, 757
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	376, 501
LweI	GCATC	2 cut(s)	334, 865
MaeI	CTAG	2 cut(s)	252, 980
MaeIII	GTNAC	4 cut(s)	226, 638, 907, 963
MalI	GATC	5 cut(s)	144, 212, 266, 617, 759
MboI	GATC	5 cut(s)	142, 210, 264, 615, 757
MboII	GAAGA	4 cut(s)	425, 518, 857, 860
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	77, 303
MluCI	AATT	4 cut(s)	541, 698, 783, 985
MlyI	GAGTC	2 cut(s)	55, 529
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	4 cut(s)	372, 419, 459, 813
MslI	CAYNNNNRTG	2 cut(s)	222, 233
MspI	CCGG	3 cut(s)	34, 114, 726
MspR9I	CCNGG	4 cut(s)	34, 35, 115, 349
Mva1269I	GAATGC	1 cut(s)	946
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	3 cut(s)	34, 35, 115
NdeII	GATC	5 cut(s)	142, 210, 264, 615, 757
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	708, 717
NlaIV	GGNNCC	2 cut(s)	32, 76
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	226, 963
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	366, 516
PleI	GAGTC	2 cut(s)	55, 529
PpsI	GAGTC	2 cut(s)	55, 529
PpuMI	RGGWCCY	1 cut(s)	30
PshAI	GACNNNNGTC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	638
PspFI	CCCAGC	2 cut(s)	52, 766
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	32, 76
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	8 cut(s)	7, 47, 156, 407, 484, 586, 627, 677
RsaNI	GTAC	8 cut(s)	6, 46, 155, 406, 483, 585, 626, 676
RseI	CAYNNNNRTG	2 cut(s)	222, 233
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	372, 419, 459, 813
SatI	GCNGC	2 cut(s)	365, 515
Sau3AI	GATC	5 cut(s)	142, 210, 264, 615, 757
Sau96I	GGNCC	1 cut(s)	30
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	2 cut(s)	55, 529
ScrFI	CCNGG	4 cut(s)	34, 35, 115, 349
SduI	GDGCHC	2 cut(s)	77, 303
SfaNI	GCATC	2 cut(s)	334, 865
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	278
SmaI	CCCGGG	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	222, 233
SmlI	CTYRAG	2 cut(s)	158, 278
SmoI	CTYRAG	2 cut(s)	158, 278
Sse9I	AATT	4 cut(s)	541, 698, 783, 985
SsiI	CCGC	3 cut(s)	9, 502, 609
SspMI	CTAG	2 cut(s)	252, 980
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	32, 33, 113, 347
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	389, 452, 749, 837
TaqI	TCGA	3 cut(s)	197, 279, 959
TasI	AATT	4 cut(s)	541, 698, 783, 985
TatI	WGTACW	3 cut(s)	154, 482, 625
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	372, 419, 459, 813
Tru9I	TTAA	4 cut(s)	372, 419, 459, 813
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	226, 963
TseI	GCWGC	2 cut(s)	364, 514
Tsp45I	GTSAC	2 cut(s)	226, 963
TspDTI	ATGAA	8 cut(s)	218, 435, 509, 669, 693, 711, 819, 953
TspMI	CCCGGG	1 cut(s)	33
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	30
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	698, 985
XbaI	TCTAGA	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	278
XmaI	CCCGGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	252, 980
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.