Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Reverse (-)

25585938 .. 25590528

Gene Structure 4591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCAACGTCATCCTCCCTAAGCAGCACTGGGATTATGAGTCCCTCACCGTCCAATGGGGGGAGCAGGACGAATAGTGAGGCAAAAATCTGTGATGGGACAATGGGTCGAGCCTGGCTTCCACTTCCTCAACCCCTACTCTGGTCAATTGGTCGCCGGAATCCTCTCCATGACTTCACTAGAATCCAATCCCTCGACGTCAAAATGGAGACCAAAACCAAGTTGTATTCCAAAATATTAAGTGAAGGGAAGGCAAGAAAGCTTTTTCAGCAATTGATAGATGCAGTGGACTACTGTCACAATAAAGGTGTATATCACAGAGAACTAAAGCCAGAAAACTTGCTTTTGACCAGTAATGGAGATCTCAAAATATCTGATTTTGGACTTAGTGCATTGAGTAAGTCCGGTGACTTGTTGTCAACTAAATGTGGTTCTCCAAGCTATGTAGCTCCTGAACTACTTGTAAATAAGGGCTATGATGGAGCAGCTGCAGATGTTTCGTCTTGTGGAGTGATTCTTTTCGAAGTACTTGCCGGTCATCTGCCATTTGGTGACTCTAGCCCGATGAATTTGTACAAAAAGGTGGATCCTTTTGACGTTTTTGATGTGTACTTTGGGGAAGGGGTGAATCAGGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

213

Amino Acids

23.11

Weight (kDa)

6.42

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 193	8.7e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	77 - 195	2.5e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	581, 594
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	528, 575, 611
AfiI	CCNNNNNNNGG	3 cut(s)	56, 60, 141
AhdI	GACNNNNNGTC	2 cut(s)	105, 415
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	4 cut(s)	262, 441, 449, 488
AluI	AGCT	4 cut(s)	262, 441, 449, 488
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	581, 594
ApeKI	GCWGC	3 cut(s)	24, 485, 488
ApoI	RAATTY	1 cut(s)	568
AsuHPI	GGTGA	4 cut(s)	39, 419, 563, 637
AsuII	TTCGAA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	586
BbvI	GCAGC	3 cut(s)	36, 475, 497
BccI	CCATC	2 cut(s)	89, 473
BcgI	CGANNNNNNTGC	4 cut(s)	480, 512, 514, 546
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	180, 558
BfmI	CTRYAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	25, 486, 489
BlsI	GCNGC	3 cut(s)	26, 487, 490
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	115
BmeRI	GACNNNNNGTC	2 cut(s)	105, 415
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 60, 141
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	34, 351
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	56, 60, 141
BseNI	ACTGG	2 cut(s)	34, 351
BseXI	GCAGC	3 cut(s)	36, 475, 497
BsiSI	CCGG	3 cut(s)	157, 405, 534
BslFI	GGGAC	2 cut(s)	27, 112
BslI	CCNNNNNNNGG	3 cut(s)	56, 60, 141
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	27, 112
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	361, 586
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	581, 594
BspT104I	TTCGAA	1 cut(s)	522
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	34, 351
BssAI	RCCGGY	1 cut(s)	533
BssMI	GATC	2 cut(s)	361, 586
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	51, 296
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	20, 386
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	364, 589
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	361, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	115
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	36, 475, 497
BstX2I	RGATCY	2 cut(s)	361, 586
BstYI	RGATCY	2 cut(s)	361, 586
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	27, 291
Cfr10I	RCCGGY	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	527, 574, 610
CviAII	CATG	2 cut(s)	170, 639
CviJI	RGCY	9 cut(s)	113, 118, 262, 331, 441, 449, 474, 488, 561
CviKI_1	RGCY	9 cut(s)	113, 118, 262, 331, 441, 449, 474, 488, 561
CviQI	GTAC	3 cut(s)	527, 574, 610
DdeI	CTNAG	2 cut(s)	20, 386
DpnI	GATC	2 cut(s)	363, 588
DpnII	GATC	2 cut(s)	361, 586
DriI	GACNNNNNGTC	2 cut(s)	105, 415
Eam1105I	GACNNNNNGTC	2 cut(s)	105, 415
Eco31I	GGTCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	173, 642
FaiI	YATR	6 cut(s)	38, 171, 313, 444, 477, 640
FaqI	GGGAC	2 cut(s)	27, 112
FatI	CATG	2 cut(s)	169, 638
Fnu4HI	GCNGC	3 cut(s)	25, 486, 489
Fsp4HI	GCNGC	3 cut(s)	25, 486, 489
FspBI	CTAG	2 cut(s)	180, 558
GluI	GCNGC	3 cut(s)	25, 486, 489
HapII	CCGG	3 cut(s)	157, 405, 534
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	173, 642
HincII	GTYRAC	2 cut(s)	6, 420
HindII	GTYRAC	2 cut(s)	6, 420
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	6 cut(s)	40, 160, 183, 514, 554, 628
HpaII	CCGG	3 cut(s)	157, 405, 534
HphI	GGTGA	4 cut(s)	39, 419, 563, 637
Hpy166II	GTNNAC	4 cut(s)	6, 289, 420, 610
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	2 cut(s)	452, 632
Hpy8I	GTNNAC	4 cut(s)	6, 289, 420, 610
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	239, 244, 614
HpyCH4III	ACNGT	2 cut(s)	51, 296
HpyCH4IV	ACGT	3 cut(s)	8, 198, 597
HpyCH4V	TGCA	3 cut(s)	284, 392, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	20, 386
HpySE526I	ACGT	3 cut(s)	8, 198, 597
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	173, 642
Kzo9I	GATC	2 cut(s)	361, 586
LmnI	GCTCC	3 cut(s)	63, 454, 482
Lsp1109I	GCAGC	3 cut(s)	36, 475, 497
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	180, 558
MaeII	ACGT	3 cut(s)	8, 198, 597
MaeIII	GTNAC	3 cut(s)	296, 407, 551
MalI	GATC	2 cut(s)	363, 588
MboI	GATC	2 cut(s)	361, 586
MfeI	CAATTG	2 cut(s)	147, 272
MflI	RGATCY	2 cut(s)	361, 586
MluCI	AATT	3 cut(s)	147, 272, 568
MlyI	GAGTC	2 cut(s)	49, 548
MnlI	CCTC	7 cut(s)	25, 55, 73, 138, 174, 203, 628
MseI	TTAA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	157, 405, 534
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	2 cut(s)	147, 272
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	2 cut(s)	361, 586
NlaIII	CATG	2 cut(s)	173, 642
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	3 cut(s)	296, 407, 551
NspV	TTCGAA	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	160, 183, 514, 628
PkrI	GCNGC	3 cut(s)	26, 487, 490
PleI	GAGTC	2 cut(s)	48, 548
PpsI	GAGTC	2 cut(s)	48, 548
PshAI	GACNNNNGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	361, 586
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	3 cut(s)	528, 575, 611
RsaNI	GTAC	3 cut(s)	527, 574, 610
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	25, 486, 489
Sau3AI	GATC	2 cut(s)	361, 586
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	2 cut(s)	49, 548
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	9 cut(s)	11, 201, 264, 310, 443, 451, 490, 585, 600
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	522
Sse9I	AATT	3 cut(s)	147, 272, 568
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	180, 558
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	51, 296
TaiI	ACGT	3 cut(s)	11, 201, 600
TaqI	TCGA	3 cut(s)	109, 195, 522
TasI	AATT	3 cut(s)	147, 272, 568
TatI	WGTACW	3 cut(s)	526, 573, 609
TfiI	GAWTC	4 cut(s)	160, 183, 514, 628
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	34, 291
TseFI	GTSAC	3 cut(s)	296, 407, 551
TseI	GCWGC	3 cut(s)	24, 485, 488
Tsp45I	GTSAC	3 cut(s)	296, 407, 551
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	2 cut(s)	34, 291
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	2 cut(s)	180, 558
ZraI	GACGTC	1 cut(s)	199
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.