Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Forward (+)

6858974 .. 6861125

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTGGCTACCAACAGAAATGAGGTTCCAACCAACTATGACAGAAAACATGAACTAAAAGCTTTTGATGATACAAAGGAAGGTGTTAAAGGCCTTGTTGATGCTGGAATAACCGAGATTCCTCGAATTTTTTATCATCCACCAGATGAGTATTCCATCGACAATACCTCTGATTCAGAAGAAGTCCGGTGTAGCATTCCAGTCATAGACGTCGAAGGCCTCTTCGATCAAACTAAACGAAAGGAGATTGTTGCAGCAGTTGGAGAAGCATCAGAGACTTGGGGCTTCTTTCAAATTTCCAATCATGGAATACCTTTTGATGTGCTGGAGGAGATGAAGGATGGGGTACGTGGGTTTTATGAGCAGGATACTGAAGTGAAGAAACAGTATTATACTCGTGATGACTCCAGTAGTACAGTAGTCTACAACAGCAACTTTGATCTGTATAGTGCACCGGCAACTAATTGGAGGGATAGTTTACAGTGTTATATGGCTCCTACTCCTCCTAAGATGGAAGACTTTCCTGAAGTATGCAGAGAAATTCTTGTTGAATACTCGAAGCAAGTAATGAAGTTGGGGAAGCTATTGTTTGAGTTGTTATCCGAGGCTCTTGGGCTAAATCCAAGTCACTTGAATGACATAGATTGCAGTGAGGGGCTTATAGTTTTAGGCCATTATTATCCTGCTTGTCCACAACCAGAGTTAACAATAGGCACAAGCAAGCATGCAGATAATAGCTTCATGACTGTCCTTCTGCAAGATCATATTGGTGGTCTTCAAGTCCTTCATCAGAACAAATGGATTGATGTACCTCATGTACCGGGTGCTTTAGTGGTTAACATCGGAGATTTTGTACAGCTTATATCAAATGACAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCATAGAGGTCCCAGGGTATCAGTTGCAAGCTTTTTCGGCACAGGATTGCTGCCATCGACAAAGCTCTACGGACCCATCAAGGAGTTATTATCAGAAGACAATCCTCCAAAGTACAGGGAGACCACTGTAAGGGACTATAATGCCTACTATGTTAAAAAAGGCCTCGATGGGAAATCTGCCTTGTCTCATTTTAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

369

Amino Acids

41.63

Weight (kDa)

5.21

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 166	1.2e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 316	1.6e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	423
AcsI	RAATTY	3 cut(s)	126, 294, 540
AcuI	CTGAAG	2 cut(s)	393, 546
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	7 cut(s)	348, 415, 810, 819, 855, 900, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	1038
AgsI	TTSAA	5 cut(s)	293, 551, 634, 779, 880
AjnI	CCWGG	1 cut(s)	920
AluBI	AGCT	7 cut(s)	62, 583, 738, 859, 939, 973, 1105
AluI	AGCT	7 cut(s)	62, 583, 738, 859, 939, 973, 1105
Alw21I	GWGCWC	2 cut(s)	454, 894
Alw26I	GTCTC	3 cut(s)	269, 1022, 1098
Alw44I	GTGCAC	1 cut(s)	450
AoxI	GGCC	4 cut(s)	91, 217, 670, 1069
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	254, 958
ApoI	RAATTY	3 cut(s)	126, 294, 540
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	917, 980
AsuC2I	CCSGG	1 cut(s)	822
AvaII	GGWCC	2 cut(s)	917, 980
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	4 cut(s)	338, 360, 371, 393
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	3 cut(s)	522, 767, 1011
Bbv12I	GWGCWC	2 cut(s)	454, 894
BbvI	GCAGC	2 cut(s)	266, 945
BccI	CCATC	6 cut(s)	164, 335, 505, 970, 992, 1070
BciT130I	CCWGG	1 cut(s)	922
BciVI	GTATCC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	3 cut(s)	269, 1022, 1098
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	255, 959
BlsI	GCNGC	2 cut(s)	256, 960
Bme1390I	CCNGG	2 cut(s)	822, 922
Bme18I	GGWCC	2 cut(s)	917, 980
BmgT120I	GGNCC	2 cut(s)	917, 980
BmiI	GGNNCC	4 cut(s)	27, 495, 919, 982
BmrFI	CCNGG	2 cut(s)	822, 922
BmsI	GCATC	2 cut(s)	91, 278
BpiI	GAAGAC	3 cut(s)	522, 767, 1011
BpmI	CTGGAG	2 cut(s)	347, 391
BpuMI	CCSGG	1 cut(s)	822
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	1022
BsaJI	CCNNGG	3 cut(s)	603, 920, 921
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	460, 490, 837, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	1038
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	200, 408, 906
BseBI	CCWGG	1 cut(s)	922
BseDI	CCNNGG	3 cut(s)	603, 920, 921
BseGI	GGATG	2 cut(s)	136, 346
BseLI	CCNNNNNNNGG	1 cut(s)	1038
BseNI	ACTGG	3 cut(s)	200, 408, 906
BseRI	GAGGAG	2 cut(s)	344, 492
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	266, 945
BshFI	GGCC	4 cut(s)	93, 219, 672, 1071
BsiHKAI	GWGCWC	2 cut(s)	454, 894
BsiSI	CCGG	3 cut(s)	187, 455, 821
BslFI	GGGAC	2 cut(s)	903, 1055
BslI	CCNNNNNNNGG	1 cut(s)	1038
BsmAI	GTCTC	3 cut(s)	269, 1022, 1098
BsmFI	GGGAC	2 cut(s)	903, 1055
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	4 cut(s)	93, 219, 672, 1071
Bso31I	GGTCTC	1 cut(s)	1022
Bsp1286I	GDGCHC	2 cut(s)	454, 894
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	3 cut(s)	226, 439, 760
BspANI	GGCC	4 cut(s)	93, 219, 672, 1071
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	4 cut(s)	27, 495, 919, 982
BspTNI	GGTCTC	1 cut(s)	1022
BsrFI	RCCGGY	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	3 cut(s)	200, 408, 906
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	603, 920, 921
BssMI	GATC	3 cut(s)	226, 439, 760
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	5 cut(s)	387, 418, 483, 748, 1036
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	210
BstAUI	TGTACA	1 cut(s)	853
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	3 cut(s)	722, 726, 937
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	136, 346
BstKTI	GATC	3 cut(s)	229, 442, 763
BstMAI	GTCTC	3 cut(s)	269, 1022, 1098
BstMBI	GATC	3 cut(s)	226, 439, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	945
BstNI	CCWGG	1 cut(s)	922
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	2 cut(s)	820, 920
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	266, 945
BstV2I	GAAGAC	3 cut(s)	522, 767, 1011
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	93, 219, 672, 1071
BtsCI	GGATG	2 cut(s)	136, 346
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	488, 655, 1032
Cac8I	GCNNGC	3 cut(s)	722, 726, 937
CciI	TCATGA	1 cut(s)	741
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	917, 980
Csp6I	GTAC	7 cut(s)	347, 414, 809, 818, 854, 899, 1021
CviAII	CATG	5 cut(s)	50, 305, 725, 742, 815
CviQI	GTAC	7 cut(s)	347, 414, 809, 818, 854, 899, 1021
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	3 cut(s)	228, 441, 762
DpnII	GATC	3 cut(s)	226, 439, 760
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco147I	AGGCCT	3 cut(s)	93, 219, 1071
Eco31I	GGTCTC	1 cut(s)	1022
Eco47I	GGWCC	2 cut(s)	917, 980
Eco57I	CTGAAG	2 cut(s)	393, 546
EcoO109I	RGGNCCY	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	920
FaeI	CATG	5 cut(s)	53, 308, 728, 745, 818
FaqI	GGGAC	2 cut(s)	903, 1055
FatI	CATG	5 cut(s)	49, 304, 724, 741, 814
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	255, 959
FokI	GGATG	2 cut(s)	123, 353
Fsp4HI	GCNGC	2 cut(s)	255, 959
GluI	GCNGC	2 cut(s)	255, 959
GsuI	CTGGAG	2 cut(s)	347, 391
HaeIII	GGCC	4 cut(s)	93, 219, 672, 1071
HapII	CCGG	3 cut(s)	187, 455, 821
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	53, 308, 728, 745, 818
HincII	GTYRAC	2 cut(s)	705, 838
HindII	GTYRAC	2 cut(s)	705, 838
HindIII	AAGCTT	3 cut(s)	60, 937, 1103
HinfI	GANTC	4 cut(s)	118, 173, 404, 876
HpaI	GTTAAC	2 cut(s)	705, 838
HpaII	CCGG	3 cut(s)	187, 455, 821
Hpy166II	GTNNAC	6 cut(s)	424, 452, 479, 692, 705, 838
Hpy188I	TCNGA	7 cut(s)	172, 178, 274, 604, 792, 845, 1003
Hpy188III	TCNNGA	4 cut(s)	398, 524, 742, 880
Hpy8I	GTNNAC	6 cut(s)	424, 452, 479, 692, 705, 838
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	74, 209, 331, 761, 794
HpyCH4III	ACNGT	5 cut(s)	387, 418, 483, 748, 1036
HpyCH4IV	ACGT	2 cut(s)	210, 349
HpyCH4V	TGCA	7 cut(s)	254, 452, 534, 648, 728, 757, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	945
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	210, 349
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	53, 308, 728, 745, 818
KspAI	GTTAAC	2 cut(s)	705, 838
Kzo9I	GATC	3 cut(s)	226, 439, 760
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	266, 945
LweI	GCATC	2 cut(s)	91, 278
MaeII	ACGT	2 cut(s)	210, 349
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	3 cut(s)	228, 441, 762
MboI	GATC	3 cut(s)	226, 439, 760
MboII	GAAGA	6 cut(s)	191, 214, 391, 527, 767, 1016
MhlI	GDGCHC	2 cut(s)	454, 894
MluCI	AATT	4 cut(s)	126, 294, 463, 540
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	53, 241
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	5 cut(s)	87, 704, 837, 1062, 1101
MslI	CAYNNNNRTG	2 cut(s)	633, 768
MspI	CCGG	3 cut(s)	187, 455, 821
MspR9I	CCNGG	2 cut(s)	822, 922
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	922
MwoI	GCNNNNNNNGC	1 cut(s)	945
NciI	CCSGG	1 cut(s)	822
NdeII	GATC	3 cut(s)	226, 439, 760
NlaIII	CATG	5 cut(s)	53, 308, 728, 745, 818
NlaIV	GGNNCC	4 cut(s)	27, 495, 919, 982
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	728
PagI	TCATGA	1 cut(s)	741
PasI	CCCWGGG	1 cut(s)	921
PceI	AGGCCT	3 cut(s)	93, 219, 1071
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	118, 173, 876
PkrI	GCNGC	2 cut(s)	256, 960
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	920
PspN4I	GGNNCC	4 cut(s)	27, 495, 919, 982
PspPI	GGNCC	2 cut(s)	917, 980
PspPPI	RGGWCCY	1 cut(s)	917
RsaI	GTAC	7 cut(s)	348, 415, 810, 819, 855, 900, 1022
RsaNI	GTAC	7 cut(s)	347, 414, 809, 818, 854, 899, 1021
RseI	CAYNNNNRTG	2 cut(s)	633, 768
SaqAI	TTAA	5 cut(s)	87, 704, 837, 1062, 1101
SatI	GCNGC	2 cut(s)	255, 959
Sau3AI	GATC	3 cut(s)	226, 439, 760
Sau96I	GGNCC	2 cut(s)	917, 980
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	822, 922
SduI	GDGCHC	2 cut(s)	454, 894
SfaNI	GCATC	2 cut(s)	91, 278
SinI	GGWCC	2 cut(s)	917, 980
SmiMI	CAYNNNNRTG	2 cut(s)	633, 768
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	4 cut(s)	126, 294, 463, 540
SseBI	AGGCCT	3 cut(s)	93, 219, 1071
StuI	AGGCCT	3 cut(s)	93, 219, 1071
StyD4I	CCNGG	2 cut(s)	820, 920
TaaI	ACNGT	5 cut(s)	387, 418, 483, 748, 1036
TaiI	ACGT	2 cut(s)	213, 352
TaqI	TCGA	7 cut(s)	124, 159, 213, 225, 557, 965, 1074
TasI	AATT	4 cut(s)	126, 294, 463, 540
TatI	WGTACW	3 cut(s)	413, 853, 1020
TfiI	GAWTC	3 cut(s)	118, 173, 876
Tru1I	TTAA	5 cut(s)	87, 704, 837, 1062, 1101
Tru9I	TTAA	5 cut(s)	87, 704, 837, 1062, 1101
TscAI	CASTG	3 cut(s)	488, 655, 1039
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	2 cut(s)	254, 958
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	66, 350, 584, 730, 776
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	3 cut(s)	488, 655, 1039
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	917, 980
XapI	RAATTY	3 cut(s)	126, 294, 540
XceI	RCATGY	1 cut(s)	728
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.