Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005413

Physical Location & Seq

Genomic Coordinates Forward (+)

24139939 .. 24141937

Gene Structure 1999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59950.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGACTGGATTAGATATGTCTCTCGACGACATGATCGCCAAGAACCGTAAGTCTCGTGGTGGAGCCGGCCCCGCTCGTGGAACCGGATCCGGATCCGGACCGGGTCCGACTCGCCGCAACAACCCTAATCGGAAATCAACCCGATCTGCTCCATACCAATCAGCCAAGGCGCCGGAGTCCACCTGGGGTCACGACATGTTCTCCGATAGATCTGAAGATCACCGATCGGGACGTTCCTCCGCCGGAATCGAAACTGGAACCAAGCTCTACATTTCCAATTTGGATTACGGTGTCATGAACGAAGACATCAAGGAACTGTTTGCTGAAGTTGGAGAACTTAAACGCTACACAGTTCATTTTGATAGAAGTGGAAGATCAAAGGGAACTGCTGAAGTAGTGTATTCTCGGCGTGGCGATGCACTCGCAGCTGTGAAGAAGTATAATGATGTTCAGCTGGATGGAAAACCCATGAAGATAGAGATTGTGGGCACTAATCTTCAAACTGCTGCAGCCCCGTCTGGTAGACCTGCGAATGGAAACTCCAATGGTGCTCCATGGAGAGGAGGACAAGGGAGAGGAGGTCAACAACGAGGTGGTGGACGAGGAGGCGGTGGCCGAGGTGGTGGTGGTCGTGGTAGGCGTCCTGGTAAGGGCCCTGCAGAGAAGATTTCTGCGGAAGATCTTGATGCGGATCTTGATAAGTACCATTCTGGAGATATGGAGACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

244

Amino Acids

25.75

Weight (kDa)

9.83

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	90 - 158	5.1e-13	RNA recognition motif
FoP_duplication	PF13865	180 - 241	2.3e-09	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59950 AT5G59950 AT5G59950 AT5G59950 AT5G59950
fragaria_vesca	FvH4_3g35460 FvH4_3g35460
malus_domestica	MD03G1097200.v1.1 MD11G1143800.v1.1
prunus_persica	Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1
pyrus_communis	pycom03g08020 pycom11g09340
rosa_chinensis	RchiOBHm_Chr5g0063611
rosa_laevigata	RLG00000035657
rosa_multiflora	Rmu_ssc0000309.1_g000049 Rmu_ssc0000309.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017180
rosa_rugosa	Rorug05G0358300 Rorug05G0358300
rosa_samantha	Rh4CG210200 Rh5AG417000 Rh5BG432700 Rh5CG455900 Rh5DG446100 Rh7AG400800
rosa_wichuraiana	Rw5G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccB1I	GGYRCC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	5, 526
AccIII	TCCGGA	2 cut(s)	92, 98
AciI	CCGC	6 cut(s)	75, 118, 243, 612, 677, 692
AclWI	GGATC	5 cut(s)	84, 90, 97, 103, 702
AcoI	YGGCCR	1 cut(s)	616
AcuI	CTGAAG	3 cut(s)	237, 348, 414
AcyI	GRCGYC	2 cut(s)	173, 643
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	4 cut(s)	80, 536, 563, 653
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	185, 646
AluBI	AGCT	3 cut(s)	268, 431, 457
AluI	AGCT	3 cut(s)	268, 431, 457
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	27, 60, 719
AlwI	GGATC	5 cut(s)	84, 90, 97, 103, 702
Aor13HI	TCCGGA	2 cut(s)	92, 98
AoxI	GGCC	3 cut(s)	70, 616, 655
ApaI	GGGCCC	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	428, 509, 512
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	5 cut(s)	71, 101, 107, 655, 656
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	101, 107
BaeGI	GKGCMC	2 cut(s)	494, 659
BamHI	GGATCC	2 cut(s)	89, 95
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	659
BauI	CACGAG	2 cut(s)	57, 78
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	440, 496, 524
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	187, 648
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	27, 60, 719
BfmI	CTRYAG	2 cut(s)	510, 660
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	538
BglII	AGATCT	2 cut(s)	212, 682
BisI	GCNGC	4 cut(s)	118, 429, 510, 513
BlsI	GCNGC	4 cut(s)	119, 430, 511, 514
Bme1390I	CCNGG	3 cut(s)	105, 187, 648
Bme18I	GGWCC	2 cut(s)	101, 107
BmgT120I	GGNCC	5 cut(s)	71, 101, 107, 655, 656
BmiI	GGNNCC	9 cut(s)	67, 73, 85, 91, 97, 108, 174, 262, 657
BmrFI	CCNGG	3 cut(s)	105, 187, 648
BmsI	GCATC	2 cut(s)	409, 679
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	105
BsaBI	GATNNNNATC	2 cut(s)	94, 693
BsaHI	GRCGYC	2 cut(s)	173, 643
BsaJI	CCNNGG	4 cut(s)	168, 186, 557, 619
BsaWI	WCCGGW	3 cut(s)	86, 92, 98
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 568, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 536, 563, 653
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	13, 262
Bse8I	GATNNNNATC	2 cut(s)	94, 693
BseAI	TCCGGA	2 cut(s)	92, 98
BseBI	CCWGG	2 cut(s)	187, 648
BseDI	CCNNGG	4 cut(s)	168, 186, 557, 619
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	2 cut(s)	94, 693
BseLI	CCNNNNNNNGG	4 cut(s)	80, 536, 563, 653
BseNI	ACTGG	2 cut(s)	13, 262
BseRI	GAGGAG	3 cut(s)	579, 594, 621
BseSI	GKGCMC	2 cut(s)	494, 659
BseXI	GCAGC	3 cut(s)	440, 496, 524
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	72, 618, 657
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	7 cut(s)	69, 87, 93, 99, 104, 176, 246
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	4 cut(s)	80, 536, 563, 653
BsmAI	GTCTC	3 cut(s)	27, 60, 719
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	72, 618, 657
Bsp120I	GGGCCC	1 cut(s)	655
Bsp1286I	GDGCHC	3 cut(s)	494, 556, 659
Bsp13I	TCCGGA	2 cut(s)	92, 98
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	6 cut(s)	75, 118, 243, 612, 677, 692
BspANI	GGCC	3 cut(s)	72, 618, 657
BspEI	TCCGGA	2 cut(s)	92, 98
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	9 cut(s)	67, 73, 85, 91, 97, 108, 174, 262, 657
BspMAI	CTGCAG	2 cut(s)	514, 664
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	5 cut(s)	84, 90, 97, 103, 702
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	13, 262
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	168, 186, 557, 619
BssNI	GRCGYC	2 cut(s)	173, 643
BssSI	CACGAG	2 cut(s)	57, 78
BssT1I	CCWWGG	2 cut(s)	168, 557
Bst2BI	CACGAG	2 cut(s)	57, 78
Bst2UI	CCWGG	2 cut(s)	187, 648
Bst4CI	ACNGT	4 cut(s)	50, 293, 321, 355
BstACI	GRCGYC	2 cut(s)	173, 643
BstC8I	GCNNGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstMAI	GTCTC	3 cut(s)	27, 60, 719
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 428
BstNI	CCWGG	2 cut(s)	187, 648
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	103, 185, 646
BstSFI	CTRYAG	2 cut(s)	510, 660
BstSLI	GKGCMC	2 cut(s)	494, 659
BstV1I	GCAGC	3 cut(s)	440, 496, 524
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	5 cut(s)	89, 95, 212, 682, 694
BstYI	RGATCY	5 cut(s)	89, 95, 212, 682, 694
BsuRI	GGCC	3 cut(s)	72, 618, 657
BtgI	CCRYGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	70
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	5 cut(s)	71, 101, 107, 655, 656
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	706
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	5 cut(s)	34, 199, 298, 472, 558
CviJI	RGCY	9 cut(s)	68, 72, 167, 268, 431, 457, 515, 618, 657
CviKI_1	RGCY	9 cut(s)	68, 72, 167, 268, 431, 457, 515, 618, 657
CviQI	GTAC	1 cut(s)	706
DinI	GGCGCC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	168, 557
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	2 cut(s)	101, 107
Eco57I	CTGAAG	3 cut(s)	237, 348, 414
EcoO109I	RGGNCCY	2 cut(s)	655, 656
EcoRII	CCWGG	2 cut(s)	185, 646
EcoT14I	CCWWGG	2 cut(s)	168, 557
EcoT38I	GRGCYC	1 cut(s)	659
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	168, 557
FaeI	CATG	5 cut(s)	37, 202, 301, 475, 561
FaiI	YATR	9 cut(s)	20, 35, 157, 200, 299, 444, 473, 559, 722
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	5 cut(s)	33, 198, 297, 471, 557
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	2 cut(s)	5, 526
Fnu4HI	GCNGC	4 cut(s)	118, 429, 510, 513
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	4 cut(s)	118, 429, 510, 513
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	118, 429, 510, 513
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	72, 618, 657
HapII	CCGG	7 cut(s)	69, 87, 93, 99, 104, 176, 246
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	2 cut(s)	173, 643
Hin1II	CATG	5 cut(s)	37, 202, 301, 475, 561
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	2 cut(s)	6, 587
HindII	GTYRAC	2 cut(s)	6, 587
HinfI	GANTC	3 cut(s)	112, 179, 249
HpaII	CCGG	7 cut(s)	69, 87, 93, 99, 104, 176, 246
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	5 cut(s)	6, 183, 527, 587, 602
Hpy188I	TCNGA	4 cut(s)	111, 135, 208, 217
Hpy188III	TCNNGA	9 cut(s)	26, 93, 99, 194, 231, 298, 686, 698, 714
Hpy8I	GTNNAC	5 cut(s)	6, 183, 527, 587, 602
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	4 cut(s)	50, 293, 321, 355
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	422, 512, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 428
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	2 cut(s)	173, 643
Hsp92II	CATG	5 cut(s)	37, 202, 301, 475, 561
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Kpn2I	TCCGGA	2 cut(s)	92, 98
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	65, 157, 559
Lsp1109I	GCAGC	3 cut(s)	440, 496, 524
LweI	GCATC	2 cut(s)	409, 679
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	191
MbiI	CCGCTC	1 cut(s)	77
MboII	GAAGA	8 cut(s)	230, 317, 387, 448, 487, 491, 679, 692
MflI	RGATCY	5 cut(s)	89, 95, 212, 682, 694
MhlI	GDGCHC	3 cut(s)	494, 556, 659
MluCI	AATT	1 cut(s)	280
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	106, 188
MmeI	TCCRAC	2 cut(s)	134, 313
MnlI	CCTC	9 cut(s)	250, 557, 560, 572, 575, 587, 599, 602, 614
MroI	TCCGGA	2 cut(s)	92, 98
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	431, 457
MspI	CCGG	7 cut(s)	69, 87, 93, 99, 104, 176, 246
MspR9I	CCNGG	3 cut(s)	105, 187, 648
MvaI	CCWGG	2 cut(s)	187, 648
MwoI	GCNNNNNNNGC	2 cut(s)	74, 428
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	557
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	5 cut(s)	37, 202, 301, 475, 561
NlaIV	GGNNCC	9 cut(s)	67, 73, 85, 91, 97, 108, 174, 262, 657
NmeAIII	GCCGAG	2 cut(s)	388, 644
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	105
PkrI	GCNGC	4 cut(s)	119, 430, 511, 514
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	2 cut(s)	106, 187
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	2 cut(s)	106, 187
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	185, 646
PspGI	CCWGG	2 cut(s)	185, 646
PspN4I	GGNNCC	9 cut(s)	67, 73, 85, 91, 97, 108, 174, 262, 657
PspOMI	GGGCCC	1 cut(s)	655
PspPI	GGNCC	5 cut(s)	71, 101, 107, 655, 656
PstI	CTGCAG	2 cut(s)	514, 664
PsuI	RGATCY	5 cut(s)	89, 95, 212, 682, 694
PsyI	GACNNNGTC	1 cut(s)	105
PvuI	CGATCG	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	431, 457
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	118, 429, 510, 513
Sau96I	GGNCC	5 cut(s)	71, 101, 107, 655, 656
SchI	GAGTC	2 cut(s)	106, 188
ScrFI	CCNGG	3 cut(s)	105, 187, 648
SduI	GDGCHC	3 cut(s)	494, 556, 659
SetI	ASST	9 cut(s)	188, 238, 270, 433, 459, 532, 586, 598, 625
SfaNI	GCATC	2 cut(s)	409, 679
SfcI	CTRYAG	2 cut(s)	510, 660
SfoI	GGCGCC	1 cut(s)	174
SinI	GGWCC	2 cut(s)	101, 107
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	6 cut(s)	75, 118, 243, 612, 677, 692
SspDI	GGCGCC	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	103, 185, 646
StyI	CCWWGG	2 cut(s)	168, 557
TaaI	ACNGT	4 cut(s)	50, 293, 321, 355
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	5, 27, 252
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	428, 509, 512
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	314, 347, 488
Tth111I	GACNNNGTC	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	101, 107
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	2 cut(s)	5, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.