Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005413

Physical Location & Seq

Genomic Coordinates Reverse (-)

43960563 .. 43960889

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCTCGGATCAGGGAGTCGCCTATGCAGCCCTAGCTGGCAGAGCCTCCACCATCGAAACTGGAACTAAGCTCAACATCTCTAATCCCGACTATGGCGTTTCCAACAAGGACATCAGGGAGCCTCCACCATGTGATTTTGTTGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGTTGCCCTCCTCTTCATCGAGTTCTGCTGCGGCGCCTGATCACGCAAGTGCCACTGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGGTGCAGACGAAGGAGTGTGTCAAGACTGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

108

Amino Acids

11.88

Weight (kDa)

6.71

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59950 AT5G59950 AT5G59950 AT5G59950 AT5G59950
fragaria_vesca	FvH4_3g35460 FvH4_3g35460
malus_domestica	MD03G1097200.v1.1 MD11G1143800.v1.1
prunus_persica	Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1
pyrus_communis	pycom03g08020 pycom11g09340
rosa_chinensis	RchiOBHm_Chr5g0063611
rosa_laevigata	RLG00000035657
rosa_multiflora	Rmu_ssc0000309.1_g000049 Rmu_ssc0000309.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017180
rosa_rugosa	Rorug05G0358300 Rorug05G0358300
rosa_samantha	Rh4CG210200 Rh5AG417000 Rh5BG432700 Rh5CG455900 Rh5DG446100 Rh7AG400800
rosa_wichuraiana	Rw5G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	18, 149
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	223
AdeI	CACNNNGTG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	266
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	38, 73
AluI	AGCT	2 cut(s)	38, 73
AlwI	GGATC	2 cut(s)	18, 149
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	29, 217, 253
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	41, 204, 240
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	228
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	4 cut(s)	30, 218, 221, 254
BlsI	GCNGC	4 cut(s)	31, 219, 222, 255
BmiI	GGNNCC	2 cut(s)	123, 224
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	167, 248, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	67, 323
BseDI	CCNNGG	3 cut(s)	167, 248, 274
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	67, 323
BseRI	GAGGAG	2 cut(s)	156, 189
BseXI	GCAGC	3 cut(s)	41, 204, 240
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	10, 154, 228
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	123, 224
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	18, 149
BspT107I	GGYRCC	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	67, 323
BssECI	CCNNGG	3 cut(s)	167, 248, 274
BssMI	GATC	3 cut(s)	10, 154, 228
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	183, 207
BstACI	GRCGYC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	2 cut(s)	248, 274
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	13, 157, 231
BstMBI	GATC	3 cut(s)	10, 154, 228
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 253, 259
BstV1I	GCAGC	3 cut(s)	41, 204, 240
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	2 cut(s)	248, 274
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	225
CviAII	CATG	2 cut(s)	132, 275
CviJI	RGCY	9 cut(s)	32, 38, 47, 73, 124, 172, 253, 262, 273
CviKI_1	RGCY	9 cut(s)	32, 38, 47, 73, 124, 172, 253, 262, 273
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	3 cut(s)	12, 156, 230
DpnII	GATC	3 cut(s)	10, 154, 228
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	183, 207
EarI	CTCTTC	2 cut(s)	183, 207
Eco130I	CCWWGG	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	274
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	135, 278
FaiI	YATR	4 cut(s)	27, 96, 133, 276
FatI	CATG	2 cut(s)	131, 274
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	30, 218, 221, 254
Fsp4HI	GCNGC	4 cut(s)	30, 218, 221, 254
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	4 cut(s)	30, 218, 221, 254
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	135, 278
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	89, 152, 314
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	263, 296
HpyCH4V	TGCA	4 cut(s)	29, 256, 290, 296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 253, 259
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	135, 278
HspAI	GCGC	1 cut(s)	223
KasI	GGCGCC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	10, 154, 228
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	24, 48, 103, 239, 276, 304
Lsp1109I	GCAGC	3 cut(s)	41, 204, 240
MaeI	CTAG	1 cut(s)	35
MalI	GATC	3 cut(s)	12, 156, 230
MboI	GATC	3 cut(s)	10, 154, 228
MboII	GAAGA	5 cut(s)	170, 173, 176, 194, 278
MluCI	AATT	1 cut(s)	279
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	58, 135, 159, 174, 177, 186, 207, 210
MslI	CAYNNNNRTG	1 cut(s)	236
MwoI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 253, 259
NarI	GGCGCC	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	10, 154, 228
NlaIII	CATG	2 cut(s)	135, 278
NlaIV	GGNNCC	2 cut(s)	123, 224
NmeAIII	GCCGAG	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	31, 219, 222, 255
PleI	GAGTC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	123, 224
PsyI	GACNNNGTC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	4 cut(s)	30, 218, 221, 254
Sau3AI	GATC	3 cut(s)	10, 154, 228
SchI	GAGTC	1 cut(s)	27
SetI	ASST	4 cut(s)	40, 75, 166, 295
SfoI	GGCGCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	220
SspDI	GGCGCC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	274
TaqI	TCGA	3 cut(s)	57, 208, 283
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	223
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	3 cut(s)	29, 217, 253
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	249
Tth111I	GACNNNGTC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.