Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0005413

Physical Location & Seq

Genomic Coordinates Reverse (-)

279809 .. 281889

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggatcatctaaacatgtccctcgacgacatcatcaagacctccaagaaacccggatccggcaacagccgcggccgcgcccgggctgcctccggtcccggacccgcccgccgcttgcccaatcgcgccggaaatcgtgcgacgccctatggcgccggcgccgccaaggcgccggagtccacgtggcagcacgacatgttctcggatcagggagcggcctacgcagcctcggctggcagagcctccgccatcgaaactggaaccaagctctacatctctaatctcgactatggcgtttccaacgaggacatcaaggagctgtttgttgaggttggtgacctgaaacgttatggagtgcattatgatagaagtggcagatcaaagggaacagcagatgtagtcttttcacgaagacaggatgctgtggcggctgttaaaagatacaacaatgtaatgcttgatgggaaaccgatgaagatagagatcgtaggaacaaacattgcaacacctggtgcaccttccgctatgccacccgctgcaaatggtgctttcagaaattcaaatggtggagctccccgaggatccatcgttactcaatctgttgcattgctatatgtaatctcctatgaagcacggatacggcattttggcctcgtatcccgtatcgatccgggatacggatacgatacggctcggatacgctcggatacgcatggatacgcggatcctgatttggatacggtctggatacgtcgtatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

253

Amino Acids

27.18

Weight (kDa)

9.72

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59950 AT5G59950 AT5G59950 AT5G59950 AT5G59950
fragaria_vesca	FvH4_3g35460 FvH4_3g35460
malus_domestica	MD03G1097200.v1.1 MD11G1143800.v1.1
prunus_persica	Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1
pyrus_communis	pycom03g08020 pycom11g09340
rosa_chinensis	RchiOBHm_Chr5g0063611
rosa_laevigata	RLG00000035657
rosa_multiflora	Rmu_ssc0000309.1_g000049 Rmu_ssc0000309.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017180
rosa_rugosa	Rorug05G0358300 Rorug05G0358300
rosa_samantha	Rh4CG210200 Rh5AG417000 Rh5BG432700 Rh5CG455900 Rh5DG446100 Rh7AG400800
rosa_wichuraiana	Rw5G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	152, 158, 169
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	4 cut(s)	72, 78, 126, 722
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	9 cut(s)	12, 51, 64, 213, 576, 589, 662, 719, 732
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	556
AcvI	CACGTG	1 cut(s)	183
AcyI	GRCGYC	4 cut(s)	143, 153, 159, 170
AdeI	CACNNNGTG	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	59, 82, 677
AflIII	ACRYGT	2 cut(s)	15, 195
AgsI	TTSAA	1 cut(s)	561
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	268, 319, 572
AluI	AGCT	3 cut(s)	268, 319, 572
Alw21I	GWGCWC	2 cut(s)	517, 574
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	9 cut(s)	12, 51, 64, 213, 576, 589, 662, 719, 732
Ama87I	CYCGRG	2 cut(s)	81, 576
AoxI	GGCC	3 cut(s)	73, 216, 649
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	4 cut(s)	86, 187, 224, 536
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	5 cut(s)	80, 128, 155, 161, 172
AspS9I	GGNCC	2 cut(s)	95, 101
AsuC2I	CCSGG	5 cut(s)	54, 82, 83, 99, 672
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	2 cut(s)	81, 576
AvaII	GGWCC	2 cut(s)	95, 101
BaeGI	GKGCMC	1 cut(s)	517
BamHI	GGATCC	3 cut(s)	56, 581, 724
BanI	GGYRCC	3 cut(s)	152, 158, 169
BanII	GRGCYC	1 cut(s)	574
BarI	GAAGNNNNNNTAC	2 cut(s)	621, 653
BbrPI	CACGTG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	2 cut(s)	517, 574
BbvI	GCAGC	4 cut(s)	73, 199, 236, 523
BccI	CCATC	3 cut(s)	257, 455, 593
BceAI	ACGGC	2 cut(s)	656, 705
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	9 cut(s)	630, 667, 668, 674, 690, 700, 710, 730, 741
BcnI	CCSGG	5 cut(s)	54, 82, 83, 99, 672
BfoI	RGCGCY	3 cut(s)	156, 162, 173
BfuI	GTATCC	9 cut(s)	630, 667, 668, 674, 690, 700, 710, 730, 741
BglI	GCCNNNNNGGC	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	54, 82, 83, 99, 510, 672
Bme18I	GGWCC	2 cut(s)	95, 101
BmeT110I	CYCGRG	2 cut(s)	81, 576
BmgT120I	GGNCC	2 cut(s)	95, 101
BmiI	GGNNCC	9 cut(s)	58, 97, 103, 154, 160, 171, 262, 583, 726
BmrFI	CCNGG	6 cut(s)	54, 82, 83, 99, 510, 672
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	418
BpuMI	CCSGG	5 cut(s)	54, 82, 83, 99, 672
Bsa29I	ATCGAT	1 cut(s)	666
BsaAI	YACGTR	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	4 cut(s)	143, 153, 159, 170
BsaJI	CCNNGG	5 cut(s)	70, 81, 165, 228, 577
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 82, 677
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	2 cut(s)	498, 605
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	5 cut(s)	70, 81, 165, 228, 577
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	3 cut(s)	59, 82, 677
BseMI	GCAATG	2 cut(s)	498, 605
BseNI	ACTGG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	517
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	73, 199, 236, 523
Bsh1236I	CGCG	4 cut(s)	72, 78, 126, 722
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	75, 218, 651
BshNI	GGYRCC	3 cut(s)	152, 158, 169
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	517, 574
BsiHKCI	CYCGRG	2 cut(s)	81, 576
BsiSI	CCGG	9 cut(s)	54, 60, 82, 93, 99, 129, 156, 173, 671
BslFI	GGGAC	2 cut(s)	4, 81
BslI	CCNNNNNNNGG	3 cut(s)	59, 82, 677
BsmFI	GGGAC	2 cut(s)	4, 81
BsnI	GGCC	3 cut(s)	75, 218, 651
BsoBI	CYCGRG	2 cut(s)	81, 576
Bsp1286I	GDGCHC	2 cut(s)	517, 574
Bsp143I	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
BspANI	GGCC	3 cut(s)	75, 218, 651
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	4 cut(s)	72, 78, 126, 722
BspLI	GGNNCC	9 cut(s)	58, 97, 103, 154, 160, 171, 262, 583, 726
BspPI	GGATC	9 cut(s)	12, 51, 64, 213, 576, 589, 662, 719, 732
BspT107I	GGYRCC	3 cut(s)	152, 158, 169
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	498, 605
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	5 cut(s)	70, 81, 165, 228, 577
BssMI	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
BssNI	GRCGYC	4 cut(s)	143, 153, 159, 170
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	742
BstACI	GRCGYC	4 cut(s)	143, 153, 159, 170
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	109, 116, 157, 235
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	4 cut(s)	72, 78, 126, 722
BstH2I	RGCGCY	3 cut(s)	156, 162, 173
BstHHI	GCGC	5 cut(s)	80, 128, 155, 161, 172
BstKTI	GATC	8 cut(s)	7, 59, 208, 380, 486, 584, 670, 727
BstMBI	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
BstMCI	CGRYCG	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	19, 199
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	6 cut(s)	52, 80, 81, 97, 508, 670
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	4 cut(s)	72, 78, 126, 722
BstV1I	GCAGC	4 cut(s)	73, 199, 236, 523
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	3 cut(s)	56, 581, 724
BstYI	RGATCY	3 cut(s)	56, 581, 724
BstZI	CGGCCG	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	666
BsuI	GTATCC	9 cut(s)	630, 667, 668, 674, 690, 700, 710, 730, 741
BsuRI	GGCC	3 cut(s)	75, 218, 651
BsuTUI	ATCGAT	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	4 cut(s)	109, 116, 157, 235
CciNI	GCGGCCGC	1 cut(s)	73
CfoI	GCGC	5 cut(s)	80, 128, 155, 161, 172
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	95, 101
Cfr42I	CCGCGG	1 cut(s)	73
Cfr9I	CCCGGG	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	1 cut(s)	151
CsiI	ACCWGGT	1 cut(s)	508
CviAII	CATG	3 cut(s)	16, 196, 713
DinI	GGCGCC	3 cut(s)	154, 160, 171
DpnI	GATC	8 cut(s)	6, 58, 207, 379, 485, 583, 669, 726
DpnII	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
DraIII	CACNNNGTG	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	73
EagI	CGGCCG	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	572
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	95, 101
Eco52I	CGGCCG	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	572
Eco72I	CACGTG	1 cut(s)	183
Eco88I	CYCGRG	2 cut(s)	81, 576
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	574
EgeI	GGCGCC	3 cut(s)	154, 160, 171
EheI	GGCGCC	3 cut(s)	154, 160, 171
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	19, 199, 716
FaqI	GGGAC	2 cut(s)	4, 81
FatI	CATG	3 cut(s)	15, 195, 712
FauI	CCCGC	3 cut(s)	112, 116, 541
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	574
GlaI	GCGC	5 cut(s)	79, 127, 154, 160, 171
HaeII	RGCGCY	3 cut(s)	156, 162, 173
HaeIII	GGCC	3 cut(s)	75, 218, 651
HapII	CCGG	9 cut(s)	54, 60, 82, 93, 99, 129, 156, 173, 671
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	5 cut(s)	80, 128, 155, 161, 172
Hin1I	GRCGYC	4 cut(s)	143, 153, 159, 170
Hin1II	CATG	3 cut(s)	19, 199, 716
Hin6I	GCGC	5 cut(s)	78, 126, 153, 159, 170
HinP1I	GCGC	5 cut(s)	78, 126, 153, 159, 170
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	9 cut(s)	54, 60, 82, 93, 99, 129, 156, 173, 671
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	180, 515
Hpy188I	TCNGA	5 cut(s)	205, 554, 696, 706, 761
Hpy188III	TCNNGA	5 cut(s)	37, 284, 408, 728, 745
Hpy8I	GTNNAC	2 cut(s)	180, 515
Hpy99I	CGWCG	3 cut(s)	29, 145, 756
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	1 cut(s)	742
HpyCH4IV	ACGT	3 cut(s)	182, 346, 751
HpyCH4V	TGCA	5 cut(s)	358, 503, 515, 539, 605
HpySE526I	ACGT	3 cut(s)	182, 346, 751
Hsp92I	GRCGYC	4 cut(s)	143, 153, 159, 170
Hsp92II	CATG	3 cut(s)	19, 199, 716
HspAI	GCGC	5 cut(s)	78, 126, 153, 159, 170
KasI	GGCGCC	3 cut(s)	152, 158, 169
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
LmnI	GCTCC	4 cut(s)	212, 316, 569, 577
Lsp1109I	GCAGC	4 cut(s)	73, 199, 236, 523
LweI	GCATC	1 cut(s)	409
MabI	ACCWGGT	1 cut(s)	508
MaeII	ACGT	3 cut(s)	182, 346, 751
MaeIII	GTNAC	2 cut(s)	335, 589
MalI	GATC	8 cut(s)	6, 58, 207, 379, 485, 583, 669, 726
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
MboII	GAAGA	2 cut(s)	423, 487
MflI	RGATCY	3 cut(s)	56, 581, 724
MhlI	GDGCHC	2 cut(s)	517, 574
MluCI	AATT	1 cut(s)	556
Mly113I	GGCGCC	3 cut(s)	153, 159, 170
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	32, 52, 100, 238, 253, 298, 322, 572, 662
MreI	CGCCGGCG	1 cut(s)	155
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	2 cut(s)	72, 536
MspI	CCGG	9 cut(s)	54, 60, 82, 93, 99, 129, 156, 173, 671
MspR9I	CCNGG	6 cut(s)	54, 82, 83, 99, 510, 672
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	4 cut(s)	72, 78, 126, 722
NaeI	GCCGGC	1 cut(s)	157
NarI	GGCGCC	3 cut(s)	153, 159, 170
NciI	CCSGG	5 cut(s)	54, 82, 83, 99, 672
NdeII	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	19, 199, 716
NlaIV	GGNNCC	9 cut(s)	58, 97, 103, 154, 160, 171, 262, 583, 726
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	335
NotI	GCGGCCGC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	19, 199
PciI	ACATGT	2 cut(s)	15, 195
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	157
PfoI	TCCNGGA	2 cut(s)	97, 670
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	3 cut(s)	156, 162, 173
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	183
PscI	ACATGT	2 cut(s)	15, 195
Psp124BI	GAGCTC	1 cut(s)	574
Psp1406I	AACGTT	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	508
PspCI	CACGTG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	9 cut(s)	58, 97, 103, 154, 160, 171, 262, 583, 726
PspPI	GGNCC	2 cut(s)	95, 101
PsuI	RGATCY	3 cut(s)	56, 581, 724
SacI	GAGCTC	1 cut(s)	574
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	8 cut(s)	4, 56, 205, 377, 483, 581, 667, 724
Sau96I	GGNCC	2 cut(s)	95, 101
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	6 cut(s)	54, 82, 83, 99, 510, 672
SduI	GDGCHC	2 cut(s)	517, 574
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	409
SfoI	GGCGCC	3 cut(s)	154, 160, 171
Sfr303I	CCGCGG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	155
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	95, 101
SmaI	CCCGGG	1 cut(s)	83
SrfI	GCCCGGGC	1 cut(s)	83
Sse9I	AATT	1 cut(s)	556
SspDI	GGCGCC	3 cut(s)	152, 158, 169
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	6 cut(s)	52, 80, 81, 97, 508, 670
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	742
TaiI	ACGT	3 cut(s)	185, 349, 754
TaqI	TCGA	4 cut(s)	24, 252, 285, 666
TasI	AATT	1 cut(s)	556
TauI	GCSGC	7 cut(s)	72, 75, 78, 114, 164, 218, 431
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	4 cut(s)	86, 187, 224, 536
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	488, 642
TspGWI	ACGGA	2 cut(s)	649, 693
TspMI	CCCGGG	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	95, 101
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	2 cut(s)	19, 199
XmaI	CCCGGG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.