FvH4_3g35460

THO complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30505331 .. 30509002
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35460.t1

Sequence Viewer

Length: 753 bp
ATGGATCATCTAAACATGTCCCTCGACGACATCATCAAGACCTCCAAGAAACCCGGATCCGGCAACAACCGCGGCGGCCGCGGCCGGGCTGCCTCAGGTCCCGGACCCGCCCGCCGCTTGCCCAATCGCGCCGGAAATCGTGCGACGCCGTACGGCGGCGCCAAGGCGCCGGAGTCCACGTGGCAGCACGACATGTTCGCGGATCAGGGAGCGGCTTACAGTGCAGCTCCGGCTGGCAGAGCCTCCGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCTCGACTATGGCGTCTCCAACGAGGACATCAAGGAGCTGTTTGTTGAGGTTGGTGACCTGAAACGCTATGGGGTGCATTACGACAGAAGTGGCAGATCCAAGGGAACCGCAGATGTAGTCTTCTCACGAAGACAGGATGCTGTGGCTGCTGTTAAAAGATACAACAATGTGATGCTTGACGGGAAACCGATGAAGATAGAGATTGTAGGAACAAACATCTCAACACCTGGTGCGCCTCTCGCTCTGCCTCCAGCTGCAAATGGTGCTTTCAGAAATTCAAATGGAGCTCCCCGGGGTGGACAGGGTAGAGGTGGTGCTTTCAACCGCCCTCGTGGTGGGGCTGGCCGTGGTCCTAGACGGGGCCGTGGTGGACGTGGAAGAGGAGGGCGTACTGGTGAAAAGGTTTCTGCTGAAGACCTTGATGCTGAGCTGGAGAAGTACCATGCAACTGCAGAAACAATGCAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

251

Amino Acids

26.36

Weight (kDa)

10.1

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 90 - 158 9e-14 RNA recognition motif
FoP_duplication PF13865 187 - 243 5.3e-09 C-terminal duplication domain of Friend of PRMT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccB1I GGYRCC 2 cut(s) 158, 166
AccBSI CCGCTC 1 cut(s) 212
AccII CGCG 4 cut(s) 72, 81, 129, 200
AclWI GGATC 5 cut(s) 12, 51, 64, 210, 372
AcoI YGGCCR 3 cut(s) 76, 82, 625
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 714
AcvI CACGTG 1 cut(s) 180
AcyI GRCGYC 4 cut(s) 146, 159, 167, 294
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 152, 673, 722
AfiI CCNNNNNNNGG 6 cut(s) 59, 85, 155, 578, 617, 641
AflIII ACRYGT 2 cut(s) 15, 192
AgsI TTSAA 2 cut(s) 561, 604
AjiI CACGTC 1 cut(s) 656
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 6 cut(s) 227, 268, 319, 536, 569, 712
AluI AGCT 6 cut(s) 227, 268, 319, 536, 569, 712
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 5 cut(s) 12, 51, 64, 210, 372
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 4 cut(s) 76, 82, 625, 643
ApeKI GCWGC 5 cut(s) 89, 184, 224, 428, 536
ApoI RAATTY 1 cut(s) 556
AspLEI GCGC 4 cut(s) 131, 161, 169, 517
AspS9I GGNCC 4 cut(s) 98, 104, 632, 643
AsuC2I CCSGG 5 cut(s) 54, 86, 102, 574, 575
AsuHPI GGTGA 2 cut(s) 347, 689
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 3 cut(s) 98, 104, 632
AxyI CCTNAGG 1 cut(s) 94
BamHI GGATCC 1 cut(s) 56
BanI GGYRCC 2 cut(s) 158, 166
BanII GRGCYC 1 cut(s) 571
BauI CACGAG 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 180
BbsI GAAGAC 3 cut(s) 394, 418, 702
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 5 cut(s) 76, 196, 236, 415, 523
BccI CCATC 1 cut(s) 257
BceAI ACGGC 4 cut(s) 133, 169, 612, 630
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 5 cut(s) 54, 86, 102, 574, 575
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 1 cut(s) 732
BfoI RGCGCY 2 cut(s) 162, 170
BlpI GCTNAGC 1 cut(s) 708
Bme1390I CCNGG 6 cut(s) 54, 86, 102, 510, 574, 575
Bme18I GGWCC 3 cut(s) 98, 104, 632
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 4 cut(s) 98, 104, 632, 643
BmiI GGNNCC 8 cut(s) 58, 100, 106, 160, 168, 262, 388, 644
BmrFI CCNGG 6 cut(s) 54, 86, 102, 510, 574, 575
BmsI GCATC 3 cut(s) 409, 444, 694
BpiI GAAGAC 3 cut(s) 394, 418, 702
BpmI CTGGAG 2 cut(s) 516, 734
Bpu1102I GCTNAGC 1 cut(s) 708
BpuMI CCSGG 5 cut(s) 54, 86, 102, 574, 575
BsaAI YACGTR 1 cut(s) 180
BsaHI GRCGYC 4 cut(s) 146, 159, 167, 294
BsaJI CCNNGG 9 cut(s) 70, 79, 162, 381, 572, 573, 574, 628, 646
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 85, 155, 578, 617, 641
Bse1I ACTGG 2 cut(s) 262, 679
Bse21I CCTNAGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 9 cut(s) 70, 79, 162, 381, 572, 573, 574, 628, 646
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 6 cut(s) 59, 85, 155, 578, 617, 641
BseMII CTCAG 2 cut(s) 108, 699
BseNI ACTGG 2 cut(s) 262, 679
BseRI GAGGAG 1 cut(s) 678
BseX3I CGGCCG 2 cut(s) 76, 82
BseXI GCAGC 5 cut(s) 76, 196, 236, 415, 523
BsgI GTGCAG 1 cut(s) 243
Bsh1236I CGCG 4 cut(s) 72, 81, 129, 200
Bsh1285I CGRYCG 2 cut(s) 79, 85
BshFI GGCC 4 cut(s) 78, 84, 627, 645
BshNI GGYRCC 2 cut(s) 158, 166
BsiEI CGRYCG 2 cut(s) 79, 85
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 8 cut(s) 54, 60, 85, 102, 132, 170, 230, 574
BsiWI CGTACG 1 cut(s) 150
BslFI GGGAC 2 cut(s) 4, 84
BslI CCNNNNNNNGG 6 cut(s) 59, 85, 155, 578, 617, 641
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 2 cut(s) 4, 84
BsnI GGCC 4 cut(s) 78, 84, 627, 645
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 4 cut(s) 4, 56, 202, 377
Bsp1720I GCTNAGC 1 cut(s) 708
BspANI GGCC 4 cut(s) 78, 84, 627, 645
BspCNI CTCAG 2 cut(s) 107, 700
BspFNI CGCG 4 cut(s) 72, 81, 129, 200
BspLI GGNNCC 8 cut(s) 58, 100, 106, 160, 168, 262, 388, 644
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 5 cut(s) 12, 51, 64, 210, 372
BspT107I GGYRCC 2 cut(s) 158, 166
BsrBI CCGCTC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 262, 679
BssECI CCNNGG 9 cut(s) 70, 79, 162, 381, 572, 573, 574, 628, 646
BssMI GATC 4 cut(s) 4, 56, 202, 377
BssNI GRCGYC 4 cut(s) 146, 159, 167, 294
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 2 cut(s) 162, 381
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 655
BstACI GRCGYC 4 cut(s) 146, 159, 167, 294
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 112, 119, 235, 625
BstDEI CTNAG 2 cut(s) 94, 708
BstDSI CCRYGG 4 cut(s) 70, 79, 628, 646
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 4 cut(s) 72, 81, 129, 200
BstH2I RGCGCY 2 cut(s) 162, 170
BstHHI GCGC 4 cut(s) 131, 161, 169, 517
BstKTI GATC 4 cut(s) 7, 59, 205, 380
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 4 cut(s) 4, 56, 202, 377
BstMCI CGRYCG 2 cut(s) 79, 85
BstMWI GCNNNNNNNGC 9 cut(s) 69, 78, 81, 221, 230, 239, 428, 521, 545
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 2 cut(s) 19, 196
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 6 cut(s) 52, 84, 100, 508, 572, 573
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 4 cut(s) 72, 81, 129, 200
BstV1I GCAGC 5 cut(s) 76, 196, 236, 415, 523
BstV2I GAAGAC 3 cut(s) 394, 418, 702
BstX2I RGATCY 2 cut(s) 56, 377
BstYI RGATCY 2 cut(s) 56, 377
BstZI CGGCCG 2 cut(s) 76, 82
Bsu36I CCTNAGG 1 cut(s) 94
BsuRI GGCC 4 cut(s) 78, 84, 627, 645
BtgI CCRYGG 4 cut(s) 70, 79, 628, 646
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 4 cut(s) 112, 119, 235, 625
CciNI GCGGCCGC 1 cut(s) 76
CfoI GCGC 4 cut(s) 131, 161, 169, 517
Cfr13I GGNCC 4 cut(s) 98, 104, 632, 643
Cfr42I CCGCGG 2 cut(s) 73, 82
Cfr9I CCCGGG 1 cut(s) 573
CseI GACGC 2 cut(s) 154, 283
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 3 cut(s) 151, 672, 721
CviAII CATG 3 cut(s) 16, 193, 725
CviQI GTAC 3 cut(s) 151, 672, 721
DdeI CTNAG 2 cut(s) 94, 708
DinI GGCGCC 2 cut(s) 160, 168
DpnI GATC 4 cut(s) 6, 58, 204, 379
DpnII GATC 4 cut(s) 4, 56, 202, 377
DraIII CACNNNGTG 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 3 cut(s) 76, 82, 625
EagI CGGCCG 2 cut(s) 76, 82
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
EciI GGCGGA 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 569
EclXI CGGCCG 2 cut(s) 76, 82
Eco130I CCWWGG 2 cut(s) 162, 381
Eco24I GRGCYC 1 cut(s) 571
Eco47I GGWCC 3 cut(s) 98, 104, 632
Eco52I CGGCCG 2 cut(s) 76, 82
Eco53kI GAGCTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 714
Eco72I CACGTG 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 162, 381
EcoT38I GRGCYC 1 cut(s) 571
EgeI GGCGCC 2 cut(s) 160, 168
EheI GGCGCC 2 cut(s) 160, 168
ErhI CCWWGG 2 cut(s) 162, 381
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 3 cut(s) 19, 196, 728
FaiI YATR 5 cut(s) 17, 194, 291, 351, 726
FaqI GGGAC 2 cut(s) 4, 84
FatI CATG 3 cut(s) 15, 192, 724
FauI CCCGC 2 cut(s) 115, 119
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 571
FspBI CTAG 1 cut(s) 636
GlaI GCGC 4 cut(s) 130, 160, 168, 516
GsuI CTGGAG 2 cut(s) 516, 734
HaeII RGCGCY 2 cut(s) 162, 170
HaeIII GGCC 4 cut(s) 78, 84, 627, 645
HapII CCGG 8 cut(s) 54, 60, 85, 102, 132, 170, 230, 574
HgaI GACGC 2 cut(s) 154, 283
HhaI GCGC 4 cut(s) 131, 161, 169, 517
Hin1I GRCGYC 4 cut(s) 146, 159, 167, 294
Hin1II CATG 3 cut(s) 19, 196, 728
Hin6I GCGC 4 cut(s) 129, 159, 167, 515
HinP1I GCGC 4 cut(s) 129, 159, 167, 515
HinfI GANTC 1 cut(s) 173
HpaII CCGG 8 cut(s) 54, 60, 85, 102, 132, 170, 230, 574
HphI GGTGA 2 cut(s) 347, 689
Hpy166II GTNNAC 3 cut(s) 177, 581, 653
Hpy188I TCNGA 1 cut(s) 554
Hpy188III TCNNGA 3 cut(s) 37, 284, 408
Hpy8I GTNNAC 3 cut(s) 177, 581, 653
Hpy99I CGWCG 2 cut(s) 29, 148
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 179, 655
HpyCH4V TGCA 6 cut(s) 224, 358, 539, 728, 734, 745
HpyF10VI GCNNNNNNNGC 9 cut(s) 69, 78, 81, 221, 230, 239, 428, 521, 545
HpyF3I CTNAG 2 cut(s) 94, 708
HpySE526I ACGT 2 cut(s) 179, 655
Hsp92I GRCGYC 4 cut(s) 146, 159, 167, 294
Hsp92II CATG 3 cut(s) 19, 196, 728
HspAI GCGC 4 cut(s) 129, 159, 167, 515
KasI GGCGCC 2 cut(s) 158, 166
KspI CCGCGG 2 cut(s) 73, 82
Kzo9I GATC 4 cut(s) 4, 56, 202, 377
LmnI GCTCC 5 cut(s) 209, 232, 316, 566, 574
Lsp1109I GCAGC 5 cut(s) 76, 196, 236, 415, 523
LweI GCATC 3 cut(s) 409, 444, 694
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 1 cut(s) 636
MaeII ACGT 2 cut(s) 179, 655
MaeIII GTNAC 1 cut(s) 335
MalI GATC 4 cut(s) 6, 58, 204, 379
MbiI CCGCTC 1 cut(s) 212
MboI GATC 4 cut(s) 4, 56, 202, 377
MboII GAAGA 5 cut(s) 394, 423, 487, 672, 707
MflI RGATCY 2 cut(s) 56, 377
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 1 cut(s) 556
Mly113I GGCGCC 2 cut(s) 159, 167
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 324
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 3 cut(s) 72, 81, 536
MspI CCGG 8 cut(s) 54, 60, 85, 102, 132, 170, 230, 574
MspR9I CCNGG 6 cut(s) 54, 86, 102, 510, 574, 575
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 4 cut(s) 72, 81, 129, 200
MwoI GCNNNNNNNGC 9 cut(s) 69, 78, 81, 221, 230, 239, 428, 521, 545
NarI GGCGCC 2 cut(s) 159, 167
NciI CCSGG 5 cut(s) 54, 86, 102, 574, 575
NdeII GATC 4 cut(s) 4, 56, 202, 377
NlaIII CATG 3 cut(s) 19, 196, 728
NlaIV GGNNCC 8 cut(s) 58, 100, 106, 160, 168, 262, 388, 644
NmuCI GTSAC 1 cut(s) 335
NotI GCGGCCGC 1 cut(s) 76
NspI RCATGY 2 cut(s) 19, 196
PciI ACATGT 2 cut(s) 15, 192
PcsI WCGNNNNNNNCGW 1 cut(s) 291
Pfl23II CGTACG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 100
PleI GAGTC 1 cut(s) 181
PluTI GGCGCC 2 cut(s) 162, 170
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 98
PscI ACATGT 2 cut(s) 15, 192
Psp124BI GAGCTC 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 508
PspCI CACGTG 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 508
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 8 cut(s) 58, 100, 106, 160, 168, 262, 388, 644
PspPI GGNCC 4 cut(s) 98, 104, 632, 643
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 2 cut(s) 56, 377
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 152, 673, 722
RsaNI GTAC 3 cut(s) 151, 672, 721
SacI GAGCTC 1 cut(s) 571
SacII CCGCGG 2 cut(s) 73, 82
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 4 cut(s) 4, 56, 202, 377
Sau96I GGNCC 4 cut(s) 98, 104, 632, 643
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 6 cut(s) 54, 86, 102, 510, 574, 575
SduI GDGCHC 1 cut(s) 571
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 3 cut(s) 409, 444, 694
SfcI CTRYAG 1 cut(s) 732
SfoI GGCGCC 2 cut(s) 160, 168
Sfr303I CCGCGG 2 cut(s) 73, 82
SgrBI CCGCGG 2 cut(s) 73, 82
SinI GGWCC 3 cut(s) 98, 104, 632
SmaI CCCGGG 1 cut(s) 575
Sse9I AATT 1 cut(s) 556
SspDI GGCGCC 2 cut(s) 158, 166
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 1 cut(s) 571
StyD4I CCNGG 6 cut(s) 52, 84, 100, 508, 572, 573
StyI CCWWGG 2 cut(s) 162, 381
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 2 cut(s) 182, 658
TaqI TCGA 3 cut(s) 24, 252, 285
TasI AATT 1 cut(s) 556
TauI GCSGC 7 cut(s) 75, 78, 81, 84, 117, 159, 215
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 5 cut(s) 89, 184, 224, 428, 536
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 573
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 98, 104, 632
XapI RAATTY 1 cut(s) 556
XceI RCATGY 2 cut(s) 19, 196
XmaI CCCGGG 1 cut(s) 573
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.