Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005413

Physical Location & Seq

Genomic Coordinates Reverse (-)

52715579 .. 52715905

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG400800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCTTGGATGAGGGAGCCGCCTATGCAGCCCCGGCTAGCAGAGCCTCCGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCCAGACTATGGTGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTCTGTTGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCTTTGCCACCCTCATCTTCGTCGAGTTCTGCTGCAGTGCCCAATCGCGCAAGTGCGACCTCCACGACTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAAATGGAGGAGTGTGTCAAGACCGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

5.84

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59950 AT5G59950 AT5G59950 AT5G59950 AT5G59950
fragaria_vesca	FvH4_3g35460 FvH4_3g35460
malus_domestica	MD03G1097200.v1.1 MD11G1143800.v1.1
prunus_persica	Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1 Prupe.6G081700_v2.0.a1
pyrus_communis	pycom03g08020 pycom11g09340
rosa_chinensis	RchiOBHm_Chr5g0063611
rosa_laevigata	RLG00000035657
rosa_multiflora	Rmu_ssc0000309.1_g000049 Rmu_ssc0000309.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017180
rosa_rugosa	Rorug05G0358300 Rorug05G0358300
rosa_samantha	Rh4CG210200 Rh5AG417000 Rh5BG432700 Rh5CG455900 Rh5DG446100 Rh7AG400800
rosa_wichuraiana	Rw5G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	21, 51, 128
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	2 cut(s)	73, 293
AluI	AGCT	2 cut(s)	73, 293
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	29, 217, 290, 293
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	235
AsuC2I	CCSGG	2 cut(s)	35, 320
AsuNHI	GCTAGC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	227
BbvI	GCAGC	4 cut(s)	41, 204, 280, 302
BccI	CCATC	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	35, 320
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	218
BisI	GCNGC	5 cut(s)	21, 30, 218, 291, 294
BlsI	GCNGC	5 cut(s)	22, 31, 219, 292, 295
Bme1390I	CCNGG	2 cut(s)	35, 320
BmiI	GGNNCC	3 cut(s)	19, 67, 123
BmrFI	CCNGG	2 cut(s)	35, 320
BmtI	GCTAGC	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	35, 320
BsaJI	CCNNGG	3 cut(s)	33, 167, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	33, 167, 274
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	2 cut(s)	156, 318
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	41, 204, 280, 302
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	35, 319
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	3 cut(s)	21, 51, 128
BspANI	GGCC	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	19, 67, 123
BspMAI	CTGCAG	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	33, 167, 274
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 29, 35, 44
BstSCI	CCNGG	2 cut(s)	33, 318
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	4 cut(s)	41, 204, 280, 302
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	235
CviAII	CATG	2 cut(s)	132, 275
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	2 cut(s)	40, 117
Eco130I	CCWWGG	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	135, 278
FaiI	YATR	4 cut(s)	27, 96, 133, 276
FatI	CATG	2 cut(s)	131, 274
Fnu4HI	GCNGC	5 cut(s)	21, 30, 218, 291, 294
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	5 cut(s)	21, 30, 218, 291, 294
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	5 cut(s)	21, 30, 218, 291, 294
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	2 cut(s)	35, 319
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	135, 278
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	35, 319
Hpy188III	TCNNGA	3 cut(s)	89, 152, 314
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	29, 220, 256, 290, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 29, 35, 44
Hsp92II	CATG	2 cut(s)	135, 278
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	17, 121
LpnPI	CCDG	4 cut(s)	48, 48, 102, 103
Lsp1109I	GCAGC	4 cut(s)	41, 204, 280, 302
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	5 cut(s)	170, 173, 176, 194, 278
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	35, 319
MspR9I	CCNGG	2 cut(s)	35, 320
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	4 cut(s)	26, 29, 35, 44
NciI	CCSGG	2 cut(s)	35, 320
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	154
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	135, 278
NlaIV	GGNNCC	3 cut(s)	19, 67, 123
NmeAIII	GCCGAG	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	5 cut(s)	22, 31, 219, 292, 295
PspN4I	GGNNCC	3 cut(s)	19, 67, 123
PstI	CTGCAG	1 cut(s)	222
PsyI	GACNNNGTC	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	293
SatI	GCNGC	5 cut(s)	21, 30, 218, 291, 294
Sau3AI	GATC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	35, 320
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	75, 166, 247, 295
SfcI	CTRYAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	3 cut(s)	21, 51, 128
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	33, 318
StyI	CCWWGG	1 cut(s)	274
TaqI	TCGA	3 cut(s)	57, 208, 283
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	4 cut(s)	29, 217, 290, 293
TspRI	CASTG	1 cut(s)	227
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.