Rh5CG455900

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005413
Physical Location & Seq
Forward (+)
63392670 .. 63397803
5134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG455900.1

Sequence Viewer

Length: 618 bp
ATGGATCATCTAAACATGTCCCTCGACGACATCATCAAGACCTCCAAGAAACCCGGATCCGGCAACAGCCGCGGCCGCGCCCGGGCTGCCTCCGGTCCCGGACCCGCCCGCCGCTTGCCCAATCGCGCCGGAAATCGTGCGACGCCCTATGGCGCCGGCGCCGCCAAGGCGCCGGAGTCCACGTGGCAGCACGACATGTTCTCGGATCAGGGAGCGGCCTACGCAGCCTCGGCTGGCAGAGCCTCCGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCTCGACTATGGCGTTTCCAACGAGGACATCAAGGAGCTGTTTGTTGAGGTTGGTGACCTGAAACGTTATGGAGTGCATTATGATAGAAGTGGCAGATCAAAGGGAACAGCAGATGTAGTCTTTTCACGAAGACAGGATGCTGTGGCGGCTGTCAAAAGATACAACAATGTAATGCTTGATGGGAAACCGATGAAGATAGAGATCGTCGGAACAAACATTGCAACACCTGGTGCACCTTCCGCTATGCCACCCGCTGCAAATGGTGCTTTCAGAAATTCAAATGGTGGAGCTCCCCGAGGGTATGTCTTATGTCCCACTGTTAACTTGAGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

205

Amino Acids

21.73

Weight (kDa)

9.86

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 90 - 158 6.1e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 152, 158, 169
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 3 cut(s) 72, 78, 126
AclI AACGTT 1 cut(s) 346
AclWI GGATC 4 cut(s) 12, 51, 64, 213
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 556
AcvI CACGTG 1 cut(s) 183
AcyI GRCGYC 4 cut(s) 143, 153, 159, 170
AdeI CACNNNGTG 1 cut(s) 512
AfiI CCNNNNNNNGG 2 cut(s) 59, 82
AflIII ACRYGT 2 cut(s) 15, 195
AgsI TTSAA 1 cut(s) 561
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 3 cut(s) 268, 319, 572
AluI AGCT 3 cut(s) 268, 319, 572
Alw21I GWGCWC 2 cut(s) 517, 574
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 4 cut(s) 12, 51, 64, 213
Ama87I CYCGRG 2 cut(s) 81, 576
AoxI GGCC 2 cut(s) 73, 216
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 4 cut(s) 86, 187, 224, 536
ApoI RAATTY 1 cut(s) 556
AspLEI GCGC 5 cut(s) 80, 128, 155, 161, 172
AspS9I GGNCC 2 cut(s) 95, 101
AsuC2I CCSGG 4 cut(s) 54, 82, 83, 99
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 2 cut(s) 81, 576
AvaII GGWCC 2 cut(s) 95, 101
BaeGI GKGCMC 1 cut(s) 517
BamHI GGATCC 1 cut(s) 56
BanI GGYRCC 3 cut(s) 152, 158, 169
BanII GRGCYC 1 cut(s) 574
BbrPI CACGTG 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 2 cut(s) 517, 574
BbvI GCAGC 4 cut(s) 73, 199, 236, 523
BccI CCATC 2 cut(s) 257, 455
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 4 cut(s) 54, 82, 83, 99
BfoI RGCGCY 3 cut(s) 156, 162, 173
BglI GCCNNNNNGGC 1 cut(s) 167
Bme1390I CCNGG 5 cut(s) 54, 82, 83, 99, 510
Bme18I GGWCC 2 cut(s) 95, 101
BmeT110I CYCGRG 2 cut(s) 81, 576
BmgT120I GGNCC 2 cut(s) 95, 101
BmiI GGNNCC 7 cut(s) 58, 97, 103, 154, 160, 171, 262
BmrFI CCNGG 5 cut(s) 54, 82, 83, 99, 510
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 418
BpuMI CCSGG 4 cut(s) 54, 82, 83, 99
BsaAI YACGTR 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 482
BsaHI GRCGYC 4 cut(s) 143, 153, 159, 170
BsaJI CCNNGG 5 cut(s) 70, 81, 165, 228, 577
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 82
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 482
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 5 cut(s) 70, 81, 165, 228, 577
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 59, 82
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 517
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 4 cut(s) 73, 199, 236, 523
Bsh1236I CGCG 3 cut(s) 72, 78, 126
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 75, 218
BshNI GGYRCC 3 cut(s) 152, 158, 169
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 517, 574
BsiHKCI CYCGRG 2 cut(s) 81, 576
BsiSI CCGG 8 cut(s) 54, 60, 82, 93, 99, 129, 156, 173
BslFI GGGAC 3 cut(s) 4, 81, 579
BslI CCNNNNNNNGG 2 cut(s) 59, 82
BsmFI GGGAC 3 cut(s) 4, 81, 579
BsnI GGCC 2 cut(s) 75, 218
BsoBI CYCGRG 2 cut(s) 81, 576
Bsp1286I GDGCHC 2 cut(s) 517, 574
Bsp143I GATC 5 cut(s) 4, 56, 205, 377, 483
BspANI GGCC 2 cut(s) 75, 218
BspFNI CGCG 3 cut(s) 72, 78, 126
BspLI GGNNCC 7 cut(s) 58, 97, 103, 154, 160, 171, 262
BspPI GGATC 4 cut(s) 12, 51, 64, 213
BspT107I GGYRCC 3 cut(s) 152, 158, 169
BsrBI CCGCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 5 cut(s) 70, 81, 165, 228, 577
BssMI GATC 5 cut(s) 4, 56, 205, 377, 483
BssNI GRCGYC 4 cut(s) 143, 153, 159, 170
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 601
BstACI GRCGYC 4 cut(s) 143, 153, 159, 170
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 4 cut(s) 109, 116, 157, 235
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 3 cut(s) 72, 78, 126
BstH2I RGCGCY 3 cut(s) 156, 162, 173
BstHHI GCGC 5 cut(s) 80, 128, 155, 161, 172
BstKTI GATC 5 cut(s) 7, 59, 208, 380, 486
BstMBI GATC 5 cut(s) 4, 56, 205, 377, 483
BstMCI CGRYCG 1 cut(s) 76
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 2 cut(s) 19, 199
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 5 cut(s) 52, 80, 81, 97, 508
BstSLI GKGCMC 1 cut(s) 517
BstUI CGCG 3 cut(s) 72, 78, 126
BstV1I GCAGC 4 cut(s) 73, 199, 236, 523
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 75, 218
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 4 cut(s) 109, 116, 157, 235
CciNI GCGGCCGC 1 cut(s) 73
CfoI GCGC 5 cut(s) 80, 128, 155, 161, 172
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 95, 101
Cfr42I CCGCGG 1 cut(s) 73
Cfr9I CCCGGG 1 cut(s) 81
CseI GACGC 1 cut(s) 151
CsiI ACCWGGT 1 cut(s) 508
CviAII CATG 2 cut(s) 16, 196
DinI GGCGCC 3 cut(s) 154, 160, 171
DpnI GATC 5 cut(s) 6, 58, 207, 379, 485
DpnII GATC 5 cut(s) 4, 56, 205, 377, 483
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 572
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 95, 101
Eco52I CGGCCG 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 572
Eco72I CACGTG 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 81, 576
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 574
EgeI GGCGCC 3 cut(s) 154, 160, 171
EheI GGCGCC 3 cut(s) 154, 160, 171
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 19, 199
FaiI YATR 9 cut(s) 17, 150, 197, 291, 351, 363, 527, 585, 592
FaqI GGGAC 3 cut(s) 4, 81, 579
FatI CATG 2 cut(s) 15, 195
FauI CCCGC 3 cut(s) 112, 116, 541
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 574
GlaI GCGC 5 cut(s) 79, 127, 154, 160, 171
HaeII RGCGCY 3 cut(s) 156, 162, 173
HaeIII GGCC 2 cut(s) 75, 218
HapII CCGG 8 cut(s) 54, 60, 82, 93, 99, 129, 156, 173
HgaI GACGC 1 cut(s) 151
HhaI GCGC 5 cut(s) 80, 128, 155, 161, 172
Hin1I GRCGYC 4 cut(s) 143, 153, 159, 170
Hin1II CATG 2 cut(s) 19, 199
Hin6I GCGC 5 cut(s) 78, 126, 153, 159, 170
HinP1I GCGC 5 cut(s) 78, 126, 153, 159, 170
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 1 cut(s) 176
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 8 cut(s) 54, 60, 82, 93, 99, 129, 156, 173
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 180, 515, 604
Hpy188I TCNGA 3 cut(s) 205, 491, 554
Hpy188III TCNNGA 3 cut(s) 37, 284, 408
Hpy8I GTNNAC 3 cut(s) 180, 515, 604
Hpy99I CGWCG 3 cut(s) 29, 145, 491
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 2 cut(s) 182, 346
HpyCH4V TGCA 4 cut(s) 358, 503, 515, 539
HpySE526I ACGT 2 cut(s) 182, 346
Hsp92I GRCGYC 4 cut(s) 143, 153, 159, 170
Hsp92II CATG 2 cut(s) 19, 199
HspAI GCGC 5 cut(s) 78, 126, 153, 159, 170
KasI GGCGCC 3 cut(s) 152, 158, 169
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 604
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 5 cut(s) 4, 56, 205, 377, 483
LmnI GCTCC 4 cut(s) 212, 316, 569, 577
Lsp1109I GCAGC 4 cut(s) 73, 199, 236, 523
LweI GCATC 1 cut(s) 409
MabI ACCWGGT 1 cut(s) 508
MaeII ACGT 2 cut(s) 182, 346
MaeIII GTNAC 1 cut(s) 335
MalI GATC 5 cut(s) 6, 58, 207, 379, 485
MbiI CCGCTC 1 cut(s) 215
MboI GATC 5 cut(s) 4, 56, 205, 377, 483
MboII GAAGA 2 cut(s) 423, 487
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 2 cut(s) 517, 574
MluCI AATT 1 cut(s) 556
Mly113I GGCGCC 3 cut(s) 153, 159, 170
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 324, 469
MnlI CCTC 9 cut(s) 32, 52, 100, 238, 253, 298, 322, 572, 603
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 155
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 72, 536
MspI CCGG 8 cut(s) 54, 60, 82, 93, 99, 129, 156, 173
MspR9I CCNGG 5 cut(s) 54, 82, 83, 99, 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 3 cut(s) 72, 78, 126
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 3 cut(s) 153, 159, 170
NciI CCSGG 4 cut(s) 54, 82, 83, 99
NdeII GATC 5 cut(s) 4, 56, 205, 377, 483
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 19, 199
NlaIV GGNNCC 7 cut(s) 58, 97, 103, 154, 160, 171, 262
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 335
NotI GCGGCCGC 1 cut(s) 73
NspI RCATGY 2 cut(s) 19, 199
PciI ACATGT 2 cut(s) 15, 195
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 97
PleI GAGTC 1 cut(s) 184
PluTI GGCGCC 3 cut(s) 156, 162, 173
PmaCI CACGTG 1 cut(s) 183
PmlI CACGTG 1 cut(s) 183
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 183
PscI ACATGT 2 cut(s) 15, 195
Psp124BI GAGCTC 1 cut(s) 574
Psp1406I AACGTT 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 508
PspCI CACGTG 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 7 cut(s) 58, 97, 103, 154, 160, 171, 262
PspPI GGNCC 2 cut(s) 95, 101
PsuI RGATCY 1 cut(s) 56
SacI GAGCTC 1 cut(s) 574
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 603
Sau3AI GATC 5 cut(s) 4, 56, 205, 377, 483
Sau96I GGNCC 2 cut(s) 95, 101
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 5 cut(s) 54, 82, 83, 99, 510
SduI GDGCHC 2 cut(s) 517, 574
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 1 cut(s) 409
SfoI GGCGCC 3 cut(s) 154, 160, 171
Sfr303I CCGCGG 1 cut(s) 73
SgrAI CRCCGGYG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 73
SinI GGWCC 2 cut(s) 95, 101
SmaI CCCGGG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SrfI GCCCGGGC 1 cut(s) 83
Sse9I AATT 1 cut(s) 556
SspDI GGCGCC 3 cut(s) 152, 158, 169
SstI GAGCTC 1 cut(s) 574
StyD4I CCNGG 5 cut(s) 52, 80, 81, 97, 508
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 2 cut(s) 185, 349
TaqI TCGA 3 cut(s) 24, 252, 285
TasI AATT 1 cut(s) 556
TauI GCSGC 7 cut(s) 72, 75, 78, 114, 164, 218, 431
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 4 cut(s) 86, 187, 224, 536
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 81
TspRI CASTG 1 cut(s) 604
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 95, 101
XapI RAATTY 1 cut(s) 556
XceI RCATGY 2 cut(s) 19, 199
XmaI CCCGGG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.