AT5G60590

Telomere recombination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006151
Physical Location & Seq
Forward (+)
24357021 .. 24358769
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60590.3

Sequence Viewer

Length: 495 bp
ATGAATCTCTCCACGAGGCTCGCTGAAAAACTTCCCGGAATCTTACCGGCGCCGTCTTCTCCTCTCCTGCGTAAAGGAGTCTCCGAGTTAAGATGCTTTTCAATTGCTAACCAAAGTAGAAGATTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACCTGTGTAGTGAGCAAATCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCTATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCGTAAACTTACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATCAAGAGAGTGGCTACCACAAGTCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTCTTGTACTTCAACGAGTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

164

Amino Acids

17.94

Weight (kDa)

9.13

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 81 - 163 7.7e-22 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 477
AgsI TTSAA 3 cut(s) 102, 242, 482
AluBI AGCT 4 cut(s) 170, 236, 245, 374
AluI AGCT 4 cut(s) 170, 236, 245, 374
Alw26I GTCTC 2 cut(s) 85, 167
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 2 cut(s) 36, 459
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 49
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 2 cut(s) 123, 142
BceAI ACGGC 1 cut(s) 37
BcnI CCSGG 2 cut(s) 36, 459
BcoDI GTCTC 2 cut(s) 85, 167
BfoI RGCGCY 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 36, 459
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 36, 459
BmsI GCATC 2 cut(s) 83, 295
BpiI GAAGAC 1 cut(s) 48
BpuMI CCSGG 2 cut(s) 36, 459
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 4 cut(s) 36, 47, 331, 459
BsmAI GTCTC 2 cut(s) 85, 167
Bso31I GGTCTC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 46
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 2 cut(s) 85, 167
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 4 cut(s) 218, 233, 242, 305
BstSCI CCNGG 2 cut(s) 34, 457
BstV2I GAAGAC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 476
CviAII CATG 1 cut(s) 195
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 51
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 400
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
FaeI CATG 1 cut(s) 198
FaiI YATR 4 cut(s) 196, 225, 291, 339
FatI CATG 1 cut(s) 194
FokI GGATG 1 cut(s) 192
GlaI GCGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 53
HapII CCGG 4 cut(s) 36, 47, 331, 459
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 4 cut(s) 4, 39, 78, 446
HpaII CCGG 4 cut(s) 36, 47, 331, 459
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 356, 440
Hpy188I TCNGA 2 cut(s) 85, 256
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 2 cut(s) 356, 440
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 2 cut(s) 212, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 233, 242, 305
HpyF3I CTNAG 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 50
KasI GGCGCC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 8 cut(s) 49, 60, 80, 190, 222, 344, 472, 477
LweI GCATC 2 cut(s) 83, 295
MaeIII GTNAC 2 cut(s) 422, 466
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 3 cut(s) 48, 132, 157
MfeI CAATTG 1 cut(s) 102
MluCI AATT 1 cut(s) 102
Mly113I GGCGCC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 3 cut(s) 9, 72, 441
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 2 cut(s) 89, 493
MspI CCGG 4 cut(s) 36, 47, 331, 459
MspR9I CCNGG 2 cut(s) 36, 459
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 218, 233, 242, 305
NarI GGCGCC 1 cut(s) 50
NciI CCSGG 2 cut(s) 36, 459
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 422, 466
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 4, 39, 446
PfoI TCCNGGA 1 cut(s) 34
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 461
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 89, 493
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 36, 459
SetI ASST 6 cut(s) 172, 179, 238, 247, 376, 433
SfaNI GCATC 2 cut(s) 83, 295
SfoI GGCGCC 1 cut(s) 51
SinI GGWCC 1 cut(s) 461
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 323
SspDI GGCGCC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 34, 457
TaaI ACNGT 1 cut(s) 437
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 3 cut(s) 4, 39, 446
Tru1I TTAA 2 cut(s) 89, 493
Tru9I TTAA 2 cut(s) 89, 493
TseFI GTSAC 2 cut(s) 422, 466
Tsp45I GTSAC 2 cut(s) 422, 466
TspDTI ATGAA 2 cut(s) 17, 194
VpaK11BI GGWCC 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.