Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001977.1

Orthogroup ID

OG0006151

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1713

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 773 bp

gcctgcgcagattgggcttagtgcctatagtccgcagccggagattgaagcgcggcgttgggcagaaaatggcttggagcttggagaaagtggacgccgccggcgttgaaatttctcagctgggggttgttcgtccggcgactgaagctcataccgaggaggctgttgaagctcttagagctggaaaagtcattgcagtccccacggatacgctatacggttttgcctgtgatgcttgttcattggaagcagttcatcggatttatgagattaaagggcgaaatcatactagtcctctcgcaatttgtgttggggatgtgccggatattcagcgctttgctgtcactgatcacttgcctcatggcttgcttgagtctctccttccaggacctgttactcttgtactgagacgaggggagtccagtatgcttgagaagtctttgaaccctggattggaaagtataggagtcagagttccggactgtaacttcatcagggggattgcccgtggactggggagtgcattggcccttaccagtgcaaatctaagtgggcagccaagtagtgtttgcatcaaagatttcgagaacctctggcaacattgtgcgtatgtttatcagggtggtgtgcttccttcaggtcgtgcaggctcaacagttgtggaccttgccaggctaggcaagttcaagattcttagacctggaagtgcaagggaagagactgttgctattcttgaaaggcattctcttgaagaagaaggatcatctacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sua5_yciO_yrdC

Protein Analysis

256

Amino Acids

27.5

Weight (kDa)

8.27

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60590 AT5G60590 AT5G60590
fragaria_vesca	FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470
malus_domestica	MD03G1117100.v1.1 MD11G1134900.v1.1
prunus_persica	Prupe.6G100900_v2.0.a1 Prupe.6G100900_v2.0.a1
pyrus_communis	pycom11g11200
rosa_chinensis	RchiOBHm_Chr5g0059481
rosa_laevigata	RLG00000035296
rosa_multiflora	Rmu_co8363017.1_g000001 Rmu_sc0001977.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021060
rosa_rugosa	Rorug05G0322900 Rorug05G0322900 Rorug05G0323000
rosa_samantha	Rh5AG387400 Rh5BG399000 Rh5CG422900 Rh5DG413700
rosa_wichuraiana	Rw5G036480 Rw5G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	7
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	3 cut(s)	33, 53, 98
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	164, 620
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	404
AfeI	AGCGCT	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	453, 513
AgsI	TTSAA	7 cut(s)	48, 109, 169, 444, 687, 736, 751
AhlI	ACTAGT	1 cut(s)	289
AjnI	CCWGG	4 cut(s)	384, 447, 670, 699
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AloI	GAACNNNNNNTCC	2 cut(s)	458, 490
AluBI	AGCT	5 cut(s)	80, 120, 148, 172, 181
AluI	AGCT	5 cut(s)	80, 120, 148, 172, 181
Alw26I	GTCTC	3 cut(s)	380, 402, 712
AlwI	GGATC	1 cut(s)	768
AlwNI	CAGNNNCTG	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	477
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	35, 555
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	3 cut(s)	8, 53, 335
AspS9I	GGNCC	3 cut(s)	388, 528, 663
AvaII	GGWCC	2 cut(s)	388, 663
BbvI	GCAGC	2 cut(s)	47, 567
BciT130I	CCWGG	4 cut(s)	386, 449, 672, 701
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	3 cut(s)	380, 402, 712
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	2 cut(s)	290, 676
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	4 cut(s)	36, 54, 98, 556
BlsI	GCNGC	4 cut(s)	37, 55, 99, 557
Bme1390I	CCNGG	4 cut(s)	386, 449, 672, 701
Bme18I	GGWCC	2 cut(s)	388, 663
BmgT120I	GGNCC	3 cut(s)	388, 528, 663
BmrFI	CCNGG	4 cut(s)	386, 449, 672, 701
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	222, 581
BmuI	ACTGGG	1 cut(s)	523
BpuEI	CTTGAG	2 cut(s)	391, 451
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	155, 203, 447, 507
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 513
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	3 cut(s)	422, 518, 536
Bse3DI	GCAATG	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	4 cut(s)	386, 449, 672, 701
BseDI	CCNNGG	4 cut(s)	155, 203, 447, 507
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	453, 513
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	130, 397
BseNI	ACTGG	3 cut(s)	422, 518, 536
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	47, 567
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	529
BsiSI	CCGG	5 cut(s)	39, 101, 136, 322, 478
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	453, 513
BsmAI	GTCTC	3 cut(s)	380, 402, 712
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	1 cut(s)	529
Bsp13I	TCCGGA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	348, 760
BspACI	CCGC	3 cut(s)	33, 53, 98
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	129, 398
BspEI	TCCGGA	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	53
BspPI	GGATC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	422, 518, 536
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	4 cut(s)	155, 203, 447, 507
BssMI	GATC	2 cut(s)	348, 760
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	4 cut(s)	386, 449, 672, 701
Bst4CI	ACNGT	4 cut(s)	220, 484, 657, 723
Bst6I	CTCTTC	1 cut(s)	710
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	4, 102, 367, 648
BstDEI	CTNAG	6 cut(s)	18, 116, 175, 406, 547, 694
BstDSI	CCRYGG	2 cut(s)	203, 507
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	8, 53, 335
BstKTI	GATC	2 cut(s)	351, 763
BstMAI	GTCTC	3 cut(s)	380, 402, 712
BstMBI	GATC	2 cut(s)	348, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 145, 169, 178, 232
BstNI	CCWGG	4 cut(s)	386, 449, 672, 701
BstSCI	CCNGG	4 cut(s)	384, 447, 670, 699
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	47, 567
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	529
BtgI	CCRYGG	2 cut(s)	203, 507
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	344, 543
Cac8I	GCNNGC	4 cut(s)	4, 102, 367, 648
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	3 cut(s)	8, 53, 335
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	388, 528, 663
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	641, 676
CviAII	CATG	1 cut(s)	361
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	6 cut(s)	18, 116, 175, 406, 547, 694
DpnI	GATC	2 cut(s)	350, 762
DpnII	GATC	2 cut(s)	348, 760
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco47I	GGWCC	2 cut(s)	388, 663
Eco47III	AGCGCT	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	164, 620
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	4 cut(s)	384, 447, 670, 699
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	364
FaiI	YATR	9 cut(s)	28, 152, 216, 266, 287, 362, 427, 463, 611
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	36, 54, 98, 556
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	36, 54, 98, 556
FspBI	CTAG	2 cut(s)	290, 676
FspI	TGCGCA	1 cut(s)	7
GlaI	GCGC	3 cut(s)	7, 52, 334
GluI	GCNGC	4 cut(s)	36, 54, 98, 556
GsaI	CCCAGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	5 cut(s)	39, 101, 136, 322, 478
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	3 cut(s)	8, 53, 335
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	3 cut(s)	6, 51, 333
HinP1I	GCGC	3 cut(s)	6, 51, 333
HinfI	GANTC	4 cut(s)	373, 418, 467, 690
HpaII	CCGG	5 cut(s)	39, 101, 136, 322, 478
Hpy166II	GTNNAC	3 cut(s)	93, 511, 663
Hpy188I	TCNGA	2 cut(s)	260, 472
Hpy188III	TCNNGA	5 cut(s)	478, 585, 687, 733, 748
Hpy8I	GTNNAC	3 cut(s)	93, 511, 663
HpyAV	CCTTC	3 cut(s)	391, 644, 751
HpyCH4III	ACNGT	4 cut(s)	220, 484, 657, 723
HpyCH4V	TGCA	6 cut(s)	196, 523, 541, 572, 646, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 145, 169, 178, 232
HpyF3I	CTNAG	6 cut(s)	18, 116, 175, 406, 547, 694
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	3 cut(s)	6, 51, 333
Kpn2I	TCCGGA	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 760
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	2 cut(s)	47, 567
LweI	GCATC	2 cut(s)	222, 581
MaeI	CTAG	2 cut(s)	290, 676
MaeIII	GTNAC	3 cut(s)	342, 393, 484
MalI	GATC	2 cut(s)	350, 762
MboI	GATC	2 cut(s)	348, 760
MboII	GAAGA	3 cut(s)	727, 763, 766
MluCI	AATT	2 cut(s)	110, 302
MlyI	GAGTC	3 cut(s)	382, 427, 476
MnlI	CCTC	6 cut(s)	150, 153, 305, 368, 406, 601
MreI	CGCCGGCG	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	477
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	2 cut(s)	272, 771
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	5 cut(s)	39, 101, 136, 322, 478
MspR9I	CCNGG	4 cut(s)	386, 449, 672, 701
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	386, 449, 672, 701
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	5 cut(s)	14, 145, 169, 178, 232
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	348, 760
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	342
NsbI	TGCGCA	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	741
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	690
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	37, 55, 99, 557
PleI	GAGTC	3 cut(s)	381, 426, 475
PpsI	GAGTC	3 cut(s)	381, 426, 475
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	384, 447, 670, 699
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	4 cut(s)	384, 447, 670, 699
PspPI	GGNCC	3 cut(s)	388, 528, 663
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	272, 771
SatI	GCNGC	4 cut(s)	36, 54, 98, 556
Sau3AI	GATC	2 cut(s)	348, 760
Sau96I	GGNCC	3 cut(s)	388, 528, 663
SchI	GAGTC	3 cut(s)	382, 427, 476
ScrFI	CCNGG	4 cut(s)	386, 449, 672, 701
SfaNI	GCATC	2 cut(s)	222, 581
SfcI	CTRYAG	1 cut(s)	26
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	388, 663
SmlI	CTYRAG	2 cut(s)	370, 430
SmoI	CTYRAG	2 cut(s)	370, 430
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	2 cut(s)	110, 302
SsiI	CCGC	3 cut(s)	33, 53, 98
SspMI	CTAG	2 cut(s)	290, 676
StyD4I	CCNGG	4 cut(s)	384, 447, 670, 699
TaaI	ACNGT	4 cut(s)	220, 484, 657, 723
TaqI	TCGA	1 cut(s)	584
TasI	AATT	2 cut(s)	110, 302
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	56, 100
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	2 cut(s)	272, 771
Tru9I	TTAA	2 cut(s)	272, 771
TscAI	CASTG	2 cut(s)	351, 543
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	2 cut(s)	35, 555
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	3 cut(s)	230, 244, 480
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	351, 543
VpaK11BI	GGWCC	2 cut(s)	388, 663
XapI	RAATTY	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	290, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.