Rroxscaffold_1G00021060

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006151
Physical Location & Seq
Forward (+)
25762330 .. 25764714
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021060.1

Sequence Viewer

Length: 849 bp
ATGAACGTTCCAACCAAAATCGCAGGCAGATTAGTACTCTCTTCTGCTTCTCTGCTTCCCTCTCTTCGTCCCAGAGGCCTGCGCAGATTGGGTTTAGTGCCTATAGTCCGCAGCCGGAGATTGAAGCGCGGCGTTGAGCAGAAAATGGCTTGGAGCTTGGAGAAAGTGGACGCCGCCGGCGTTGAAATTTCTCAGTTGGGGGTGGTTCGTCCGGCGACTGAAGCTCATACCGAGGAGGCTATTGAAGCTCTTAAAGCTGGAAAAGTCATTGCAGTCCCTACGGATACGCTATACGGCTTTGCCTGTGATGCTTGTTCATTGGAAGCAGTTCATCGGATTTATGAGATTAAAGGGCGAAATCATACGAGTCCTCTCGCAATTTGTGTTGGGGATGTGCCGGATATTCAGCGCTTTGCTGTCACTGATCACTTGCCTCATGGCTTGCTTGAGAGTCTCCTTCCAGGTCCTGTTACTCTTGTACTGAGACGAGGGGAGTCGAGTATGCTTGAGAAGTCTTTGAACCCTGGATTGGAAAGTATAGGAGTCAGAGTTCCGGACTGTAACTTCATCAGGGGGATTGCCCGTGGACTAGGGAGTGCATTGGCCCTTACCAGTGCAAACCTGAGCGGGCAGCCAAGTAGTGTTTGCATCAAAGATTTCGAGAACCTCTGGCAACATTGTGCGCATGTTTATCAGGGTGGTGTGCTTCCTTCAGGTCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTAGGCAAATTCAAGATTCTTAGATCTGGAAGTGCAAGGGAAGAGACTGTTGCTATTCTTGAAAGGCATTCTCTTGAAGAAGAAGGATCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

282

Amino Acids

30.27

Weight (kDa)

8.95

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 82 - 260 3.6e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 83, 684
AccBSI CCGCTC 1 cut(s) 627
AccII CGCG 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 4 cut(s) 109, 129, 174, 627
AclI AACGTT 1 cut(s) 6
AclWI GGATC 1 cut(s) 844
AcsI RAATTY 2 cut(s) 186, 758
AcuI CTGAAG 2 cut(s) 240, 696
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 36, 480
AfeI AGCGCT 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 7 cut(s) 124, 185, 245, 520, 763, 812, 827
AjnI CCWGG 3 cut(s) 460, 523, 746
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AloI GAACNNNNNNTCC 2 cut(s) 534, 566
AluBI AGCT 4 cut(s) 156, 224, 248, 257
AluI AGCT 4 cut(s) 156, 224, 248, 257
Alw26I GTCTC 3 cut(s) 458, 478, 788
AlwI GGATC 1 cut(s) 844
AlwNI CAGNNNCTG 1 cut(s) 467
Aor13HI TCCGGA 1 cut(s) 553
Aor51HI AGCGCT 1 cut(s) 410
AoxI GGCC 2 cut(s) 76, 603
ApeKI GCWGC 2 cut(s) 111, 631
ApoI RAATTY 2 cut(s) 186, 758
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 4 cut(s) 84, 129, 411, 685
AspS9I GGNCC 3 cut(s) 464, 604, 739
AvaII GGWCC 2 cut(s) 464, 739
BbvI GCAGC 2 cut(s) 123, 643
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 3 cut(s) 462, 525, 748
BciVI GTATCC 1 cut(s) 277
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 3 cut(s) 458, 478, 788
BfaI CTAG 2 cut(s) 590, 752
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 412
BfuI GTATCC 1 cut(s) 277
BglII AGATCT 1 cut(s) 773
BisI GCNGC 4 cut(s) 112, 130, 174, 632
BlsI GCNGC 4 cut(s) 113, 131, 175, 633
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 462, 525, 748
Bme18I GGWCC 2 cut(s) 464, 739
BmgT120I GGNCC 3 cut(s) 464, 604, 739
BmrFI CCNGG 3 cut(s) 462, 525, 748
BmsI GCATC 2 cut(s) 298, 657
Bpu10I CCTNAGC 1 cut(s) 623
BpuEI CTTGAG 2 cut(s) 467, 527
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 231, 523, 583
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 3 cut(s) 462, 525, 748
BseDI CCNNGG 3 cut(s) 231, 523, 583
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 206, 473, 614
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 123, 643
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 78, 605
BsiSI CCGG 5 cut(s) 115, 177, 212, 398, 554
BslFI GGGAC 2 cut(s) 54, 260
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 3 cut(s) 458, 478, 788
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 54, 260
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 2 cut(s) 78, 605
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 3 cut(s) 424, 773, 836
BspACI CCGC 4 cut(s) 109, 129, 174, 627
BspANI GGCC 2 cut(s) 78, 605
BspCNI CTCAG 3 cut(s) 205, 474, 615
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 1 cut(s) 129
BspPI GGATC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 231, 523, 583
BssMI GATC 3 cut(s) 424, 773, 836
BssNI GRCGYC 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 462, 525, 748
Bst4CI ACNGT 3 cut(s) 560, 733, 799
Bst6I CTCTTC 3 cut(s) 46, 69, 786
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 6 cut(s) 25, 80, 178, 443, 629, 724
BstDEI CTNAG 4 cut(s) 192, 482, 623, 770
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 4 cut(s) 84, 129, 411, 685
BstKTI GATC 3 cut(s) 427, 776, 839
BstMAI GTCTC 3 cut(s) 458, 478, 788
BstMBI GATC 3 cut(s) 424, 773, 836
BstMWI GCNNNNNNNGC 4 cut(s) 221, 245, 254, 308
BstNI CCWGG 3 cut(s) 462, 525, 748
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 3 cut(s) 460, 523, 746
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 123, 643
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 78, 605
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 420, 619
Cac8I GCNNGC 6 cut(s) 25, 80, 178, 443, 629, 724
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 4 cut(s) 84, 129, 411, 685
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 464, 604, 739
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 35, 479
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 2 cut(s) 437, 686
CviQI GTAC 2 cut(s) 35, 479
DdeI CTNAG 4 cut(s) 192, 482, 623, 770
DpnI GATC 3 cut(s) 426, 775, 838
DpnII GATC 3 cut(s) 424, 773, 836
Eam1104I CTCTTC 3 cut(s) 46, 69, 786
EarI CTCTTC 3 cut(s) 46, 69, 786
Eco147I AGGCCT 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 464, 739
Eco47III AGCGCT 1 cut(s) 410
Eco57I CTGAAG 2 cut(s) 240, 696
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 460, 523, 746
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 2 cut(s) 440, 689
FaiI YATR 9 cut(s) 104, 228, 292, 342, 363, 438, 503, 539, 687
FaqI GGGAC 2 cut(s) 54, 260
FatI CATG 2 cut(s) 436, 685
FauI CCCGC 1 cut(s) 620
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 4 cut(s) 112, 130, 174, 632
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 4 cut(s) 112, 130, 174, 632
FspAI RTGCGCAY 1 cut(s) 684
FspBI CTAG 2 cut(s) 590, 752
FspI TGCGCA 2 cut(s) 83, 684
GlaI GCGC 4 cut(s) 83, 128, 410, 684
GluI GCNGC 4 cut(s) 112, 130, 174, 632
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 78, 605
HapII CCGG 5 cut(s) 115, 177, 212, 398, 554
HgaI GACGC 1 cut(s) 179
HhaI GCGC 4 cut(s) 84, 129, 411, 685
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 440, 689
Hin6I GCGC 4 cut(s) 82, 127, 409, 683
HinP1I GCGC 4 cut(s) 82, 127, 409, 683
HinfI GANTC 5 cut(s) 367, 451, 494, 543, 766
HpaII CCGG 5 cut(s) 115, 177, 212, 398, 554
Hpy166II GTNNAC 3 cut(s) 169, 587, 739
Hpy188I TCNGA 2 cut(s) 336, 548
Hpy188III TCNNGA 6 cut(s) 554, 661, 763, 777, 809, 824
Hpy8I GTNNAC 3 cut(s) 169, 587, 739
HpyAV CCTTC 3 cut(s) 467, 720, 827
HpyCH4III ACNGT 3 cut(s) 560, 733, 799
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 6 cut(s) 272, 599, 617, 648, 722, 785
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 245, 254, 308
HpyF3I CTNAG 4 cut(s) 192, 482, 623, 770
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 440, 689
HspAI GCGC 4 cut(s) 82, 127, 409, 683
Kpn2I TCCGGA 1 cut(s) 553
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 424, 773, 836
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 123, 643
LweI GCATC 2 cut(s) 298, 657
MaeI CTAG 2 cut(s) 590, 752
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 418, 469, 560
MalI GATC 3 cut(s) 426, 775, 838
MbiI CCGCTC 1 cut(s) 627
MboI GATC 3 cut(s) 424, 773, 836
MboII GAAGA 5 cut(s) 33, 56, 803, 839, 842
MflI RGATCY 1 cut(s) 773
MluCI AATT 3 cut(s) 186, 378, 758
MlyI GAGTC 4 cut(s) 376, 460, 503, 552
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 8 cut(s) 68, 70, 226, 229, 381, 444, 482, 677
MreI CGCCGGCG 1 cut(s) 176
MroI TCCGGA 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 252, 348, 847
MspI CCGG 5 cut(s) 115, 177, 212, 398, 554
MspR9I CCNGG 3 cut(s) 462, 525, 748
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 3 cut(s) 462, 525, 748
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 221, 245, 254, 308
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 3 cut(s) 424, 773, 836
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 440, 689
NmuCI GTSAC 1 cut(s) 418
NsbI TGCGCA 2 cut(s) 83, 684
NspI RCATGY 1 cut(s) 689
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 817
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 766
PkrI GCNGC 4 cut(s) 113, 131, 175, 633
PleI GAGTC 4 cut(s) 375, 459, 502, 551
PpsI GAGTC 4 cut(s) 375, 459, 502, 551
PpuMI RGGWCCY 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 460, 523, 746
PspGI CCWGG 3 cut(s) 460, 523, 746
PspPI GGNCC 3 cut(s) 464, 604, 739
PspPPI RGGWCCY 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 773
RsaI GTAC 2 cut(s) 36, 480
RsaNI GTAC 2 cut(s) 35, 479
SaqAI TTAA 3 cut(s) 252, 348, 847
SatI GCNGC 4 cut(s) 112, 130, 174, 632
Sau3AI GATC 3 cut(s) 424, 773, 836
Sau96I GGNCC 3 cut(s) 464, 604, 739
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 4 cut(s) 376, 460, 503, 552
ScrFI CCNGG 3 cut(s) 462, 525, 748
SfaNI GCATC 2 cut(s) 298, 657
SfcI CTRYAG 1 cut(s) 102
SgrAI CRCCGGYG 1 cut(s) 176
SinI GGWCC 2 cut(s) 464, 739
SmlI CTYRAG 2 cut(s) 446, 506
SmoI CTYRAG 2 cut(s) 446, 506
Sse9I AATT 3 cut(s) 186, 378, 758
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 109, 129, 174, 627
SspMI CTAG 2 cut(s) 590, 752
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 460, 523, 746
TaaI ACNGT 3 cut(s) 560, 733, 799
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 497, 660
TasI AATT 3 cut(s) 186, 378, 758
TatI WGTACW 2 cut(s) 34, 478
TauI GCSGC 2 cut(s) 132, 176
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 3 cut(s) 252, 348, 847
Tru9I TTAA 3 cut(s) 252, 348, 847
TscAI CASTG 2 cut(s) 427, 619
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 2 cut(s) 111, 631
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 17, 306, 320, 556
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 427, 619
VpaK11BI GGWCC 2 cut(s) 464, 739
XapI RAATTY 2 cut(s) 186, 758
XceI RCATGY 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 590, 752
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.