Rh5BG399000

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006151
Physical Location & Seq
Reverse (-)
64743575 .. 64745479
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG399000.1

Sequence Viewer

Length: 972 bp
ATGTCTTCTCCAAATTACCCATACAATTTCCAAAAAGTAAATTTGCCCCTTTTTTGCGAGGCATCTCCTCCTCACAGTCGACCCAAAATAGCCAGTCTGCCGAGTATAATGAACGTTCCAACCAAAATCGCAGGCAGATTTCCCCTTCTACTACTCTCTTCTGCTCCTCTGCTTCCCTCCTCCTCTCTTCGTCCCAGAGGCCTGCGCAGATTGGGCTTAGTGCCTATAGTCCGCAGCTGGAGATTGAAGCCCGGCGTTGAGCAGAAAATGGCTTGGAGCTTGGAGAAAGTGGACGCCGCCGGCGTTGAAGTTTCTCAGTTGGGGGTTGTTCGTCCGGCGACTGAAGCTCATACCGAGGAGGCTATTGAAGCTCTTAAAGCTGGAAAAATCATTGCAGTCCCTACGGATACGCTATACGGCTTTGCCTGTGATGCTTGTTCATTGGAAGCAGTTCATCGGATTTATGAGGTTAAAGGGCGAAATCATACGAGTCCTCTCGCAATTTGTGTTGGGGATGTGCCGGATATTCAGCGCTTTGCTGTCACTGATCACTTGCCTCATGGCTTGCTTGAGTCTCTCCTTCCAGGACCTGTTACTCTTGTACTGAGACGAGGGGAGTCGAGTATGCTTGAGAAGTCTTTGAACCCTGGATTGGAAAGTATAGGAGTCAGAGTTCCGGACTGTAACTTCATCAGGGGGATTGCCCGTGGACTGGGGAGTGCATTGGCCCTTACCAGTGCAAACCTGAGCGGGCAGCCAAGTAGTGTTTGCATCAAAGATTTCGAGAACCTCTGGCAACATTGTGCGTATGTTTATCAGGGTGGTGTGCTTCCTTCAGGTCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTAGGCAAGTTCAAGATTCTTAGACCTGGAAGTGCAAGGGAAGAGACTGTTGCTATTCTTGAAAGGCATTCTCTTGAAGAAGAAGGATCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

323

Amino Acids

34.83

Weight (kDa)

8.83

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 123 - 301 3e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 750
AccI GTMKAC 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 3 cut(s) 232, 297, 750
AclI AACGTT 1 cut(s) 114
AclWI GGATC 1 cut(s) 967
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 363, 819
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 652, 712
AgsI TTSAA 7 cut(s) 247, 308, 368, 643, 886, 935, 950
AjnI CCWGG 4 cut(s) 583, 646, 869, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
AluBI AGCT 5 cut(s) 237, 279, 347, 371, 380
AluI AGCT 5 cut(s) 237, 279, 347, 371, 380
Alw26I GTCTC 3 cut(s) 579, 601, 911
AlwI GGATC 1 cut(s) 967
AlwNI CAGNNNCTG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 676
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 2 cut(s) 199, 726
ApeKI GCWGC 2 cut(s) 234, 754
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 2 cut(s) 207, 534
AspS9I GGNCC 3 cut(s) 587, 727, 862
AsuC2I CCSGG 1 cut(s) 252
AvaII GGWCC 2 cut(s) 587, 862
BbvI GCAGC 2 cut(s) 246, 766
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 4 cut(s) 585, 648, 871, 900
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 579, 601, 911
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 535
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 3 cut(s) 235, 297, 755
BlsI GCNGC 3 cut(s) 236, 298, 756
Bme1390I CCNGG 5 cut(s) 252, 585, 648, 871, 900
Bme18I GGWCC 2 cut(s) 587, 862
BmgT120I GGNCC 3 cut(s) 587, 727, 862
BmrFI CCNGG 5 cut(s) 252, 585, 648, 871, 900
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 3 cut(s) 71, 421, 780
BmuI ACTGGG 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 590, 650
BpuMI CCSGG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 354, 646, 706
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 652, 712
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 93, 717, 735
Bse3DI GCAATG 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 4 cut(s) 585, 648, 871, 900
BseDI CCNNGG 3 cut(s) 354, 646, 706
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 652, 712
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 329, 596, 737
BseNI ACTGG 3 cut(s) 93, 717, 735
BseRI GAGGAG 6 cut(s) 57, 60, 156, 169, 172, 371
BseXI GCAGC 2 cut(s) 246, 766
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 2 cut(s) 201, 728
BsiSI CCGG 5 cut(s) 252, 300, 335, 521, 677
BslFI GGGAC 2 cut(s) 177, 383
BslI CCNNNNNNNGG 2 cut(s) 652, 712
BsmAI GTCTC 3 cut(s) 579, 601, 911
BsmBI CGTCTC 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 177, 383
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 2 cut(s) 201, 728
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 2 cut(s) 547, 959
BspACI CCGC 3 cut(s) 232, 297, 750
BspANI GGCC 2 cut(s) 201, 728
BspCNI CTCAG 3 cut(s) 328, 597, 738
BspEI TCCGGA 1 cut(s) 676
BspPI GGATC 1 cut(s) 967
BsrBI CCGCTC 1 cut(s) 750
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 93, 717, 735
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 354, 646, 706
BssMI GATC 2 cut(s) 547, 959
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 585, 648, 871, 900
Bst4CI ACNGT 4 cut(s) 77, 683, 856, 922
Bst6I CTCTTC 3 cut(s) 163, 192, 909
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 6 cut(s) 133, 203, 301, 566, 752, 847
BstDEI CTNAG 5 cut(s) 217, 315, 605, 746, 893
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 1 cut(s) 520
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 2 cut(s) 207, 534
BstKTI GATC 2 cut(s) 550, 962
BstMAI GTCTC 3 cut(s) 579, 601, 911
BstMBI GATC 2 cut(s) 547, 959
BstMWI GCNNNNNNNGC 5 cut(s) 213, 344, 368, 377, 431
BstNI CCWGG 4 cut(s) 585, 648, 871, 900
BstSCI CCNGG 5 cut(s) 250, 583, 646, 869, 898
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 246, 766
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 201, 728
BtgI CCRYGG 1 cut(s) 706
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 543, 742
Cac8I GCNNGC 6 cut(s) 133, 203, 301, 566, 752, 847
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 207, 534
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 587, 727, 862
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 1 cut(s) 560
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 5 cut(s) 217, 315, 605, 746, 893
DpnI GATC 2 cut(s) 549, 961
DpnII GATC 2 cut(s) 547, 959
Eam1104I CTCTTC 3 cut(s) 163, 192, 909
EarI CTCTTC 3 cut(s) 163, 192, 909
Eco147I AGGCCT 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 587, 862
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 2 cut(s) 363, 819
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 4 cut(s) 583, 646, 869, 898
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 1 cut(s) 563
FaqI GGGAC 2 cut(s) 177, 383
FatI CATG 1 cut(s) 559
FauI CCCGC 1 cut(s) 743
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 235, 297, 755
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 3 cut(s) 235, 297, 755
FspBI CTAG 1 cut(s) 875
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 2 cut(s) 206, 533
GluI GCNGC 3 cut(s) 235, 297, 755
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 201, 728
HapII CCGG 5 cut(s) 252, 300, 335, 521, 677
HgaI GACGC 1 cut(s) 302
HhaI GCGC 2 cut(s) 207, 534
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 1 cut(s) 563
Hin6I GCGC 2 cut(s) 205, 532
HinP1I GCGC 2 cut(s) 205, 532
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 5 cut(s) 490, 572, 617, 666, 889
HpaII CCGG 5 cut(s) 252, 300, 335, 521, 677
Hpy166II GTNNAC 4 cut(s) 80, 292, 710, 862
Hpy188I TCNGA 2 cut(s) 459, 671
Hpy188III TCNNGA 5 cut(s) 677, 784, 886, 932, 947
Hpy8I GTNNAC 4 cut(s) 80, 292, 710, 862
HpyAV CCTTC 4 cut(s) 155, 590, 843, 950
HpyCH4III ACNGT 4 cut(s) 77, 683, 856, 922
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 6 cut(s) 395, 722, 740, 771, 845, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 213, 344, 368, 377, 431
HpyF3I CTNAG 5 cut(s) 217, 315, 605, 746, 893
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 1 cut(s) 563
HspAI GCGC 2 cut(s) 205, 532
Kpn2I TCCGGA 1 cut(s) 676
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 2 cut(s) 547, 959
LmnI GCTCC 2 cut(s) 169, 276
Lsp1109I GCAGC 2 cut(s) 246, 766
LweI GCATC 3 cut(s) 71, 421, 780
MaeI CTAG 1 cut(s) 875
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 541, 592, 683
MalI GATC 2 cut(s) 549, 961
MbiI CCGCTC 1 cut(s) 750
MboI GATC 2 cut(s) 547, 959
MboII GAAGA 5 cut(s) 150, 179, 926, 962, 965
MluCI AATT 4 cut(s) 13, 25, 40, 501
MlyI GAGTC 4 cut(s) 499, 581, 626, 675
MmeI TCCRAC 1 cut(s) 143
MreI CGCCGGCG 1 cut(s) 299
MroI TCCGGA 1 cut(s) 676
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 3 cut(s) 375, 471, 970
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 5 cut(s) 252, 300, 335, 521, 677
MspR9I CCNGG 5 cut(s) 252, 585, 648, 871, 900
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 4 cut(s) 585, 648, 871, 900
MwoI GCNNNNNNNGC 5 cut(s) 213, 344, 368, 377, 431
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 252
NdeII GATC 2 cut(s) 547, 959
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 563
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 541
NsbI TGCGCA 1 cut(s) 206
PceI AGGCCT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 940
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 889
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 3 cut(s) 236, 298, 756
PleI GAGTC 4 cut(s) 498, 580, 625, 674
PpsI GAGTC 4 cut(s) 498, 580, 625, 674
PpuMI RGGWCCY 1 cut(s) 587
Psp1406I AACGTT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 4 cut(s) 583, 646, 869, 898
PspGI CCWGG 4 cut(s) 583, 646, 869, 898
PspPI GGNCC 3 cut(s) 587, 727, 862
PspPPI RGGWCCY 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SalI GTCGAC 1 cut(s) 78
SaqAI TTAA 3 cut(s) 375, 471, 970
SatI GCNGC 3 cut(s) 235, 297, 755
Sau3AI GATC 2 cut(s) 547, 959
Sau96I GGNCC 3 cut(s) 587, 727, 862
SchI GAGTC 4 cut(s) 499, 581, 626, 675
ScrFI CCNGG 5 cut(s) 252, 585, 648, 871, 900
SfaNI GCATC 3 cut(s) 71, 421, 780
SfcI CTRYAG 1 cut(s) 225
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 2 cut(s) 587, 862
SmlI CTYRAG 2 cut(s) 569, 629
SmoI CTYRAG 2 cut(s) 569, 629
Sse9I AATT 4 cut(s) 13, 25, 40, 501
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 3 cut(s) 232, 297, 750
SspMI CTAG 1 cut(s) 875
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 5 cut(s) 250, 583, 646, 869, 898
TaaI ACNGT 4 cut(s) 77, 683, 856, 922
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 79, 620, 783
TasI AATT 4 cut(s) 13, 25, 40, 501
TatI WGTACW 1 cut(s) 601
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 889
Tru1I TTAA 3 cut(s) 375, 471, 970
Tru9I TTAA 3 cut(s) 375, 471, 970
TscAI CASTG 2 cut(s) 550, 742
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 234, 754
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 125, 429, 443, 679
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 550, 742
VpaK11BI GGWCC 2 cut(s) 587, 862
XapI RAATTY 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.