Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006151

Physical Location & Seq

Genomic Coordinates Forward (+)

7027292 .. 7029759

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G100900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAACATTCCAGCCAGAGTTGCAGCCTCGCTTCCCCTACTCGCCTCTCCTTTGCTTCCCTCCTCCTCTCTGAGTCTCCAGAGCTTCTGCTCTTTAATCTCTCACCACCGCGTGCGCAAATTGGGTTTAGTGCCAACAGTGCAGAGTAGGAGATTGAGACGCTGCGTAGAAGAGAAAATGGCTTGGAGTTTAGAGAAGTGCGATGCGGGAGTTGAAACCGAGTTGGGGGTAGTTCGACCGGCCACCGGAGCTCACACTGAAGAGGCAGTTGAAGCACTCAGAGCCGGCAAAGTCATTGCAGTCCCCACCGATACACTTTACGGCTTCGCTTGCGATGCTTGTTCTTTGGAAGCAGTGAATCGGATATATGAGATTAAAGGACGTAAACATACAAGTCCTCTTGCAATTTGTGTTGGGGATGTGCCAGACCTTAAGCGGTTTGCTGCCACAGAACACTTGCCCCATGGCTTACTTGAGAATCTCCTTCCAGGACCTGTTACTCTTGTACTAAACCGAGGGGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCAGGATTGGATAGTATAGGAGTCCGGGTGCCTGACTGTAACTTCATCAGGGACATTGCCCGCAGACTGGGAAGTGCATTGGCCCTTACAAGCGCAAACCTAAGCGGGCAGCCAAGTAGTGTTTCCATCAAAGATTTTGAGAACCTCTGGGAACATTGTGCATATGTTTACAATGGTGGTGTGCTTCCTTCAGGCCGTGCAGGCTCAACAGTCGTGGACCTCACCAGGCTAGGCAAGTACAAGATTCTTCGACCTGGAAGTGCAAAGGAAGAGACTGTTGCAATCCTTGAAATGCATTCTCTTGAGGAAGAAGGAGCAGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sua5_yciO_yrdC

Protein Analysis

292

Amino Acids

31.25

Weight (kDa)

7.07

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60590 AT5G60590 AT5G60590
fragaria_vesca	FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470
malus_domestica	MD03G1117100.v1.1 MD11G1134900.v1.1
prunus_persica	Prupe.6G100900_v2.0.a1 Prupe.6G100900_v2.0.a1
pyrus_communis	pycom11g11200
rosa_chinensis	RchiOBHm_Chr5g0059481
rosa_laevigata	RLG00000035296
rosa_multiflora	Rmu_co8363017.1_g000001 Rmu_sc0001977.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021060
rosa_rugosa	Rorug05G0322900 Rorug05G0322900 Rorug05G0323000
rosa_samantha	Rh5AG387400 Rh5BG399000 Rh5CG422900 Rh5DG413700
rosa_wichuraiana	Rw5G036480 Rw5G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	577
AccII	CGCG	1 cut(s)	111
AciI	CCGC	5 cut(s)	109, 206, 436, 610, 654
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	279, 723
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	2 cut(s)	507, 788
AfiI	CCNNNNNNNGG	4 cut(s)	225, 245, 556, 616
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	215, 272, 839
AjnI	CCWGG	4 cut(s)	487, 550, 773, 802
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 571, 655, 687
AluBI	AGCT	3 cut(s)	84, 251, 869
AluI	AGCT	3 cut(s)	84, 251, 869
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	4 cut(s)	80, 151, 546, 815
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	3 cut(s)	240, 630, 742
ApeKI	GCWGC	5 cut(s)	23, 162, 443, 658, 866
AspLEI	GCGC	2 cut(s)	117, 644
AspS9I	GGNCC	3 cut(s)	491, 631, 766
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	95, 763
AvaII	GGWCC	2 cut(s)	491, 766
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	35, 149, 430, 670
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	2 cut(s)	337, 729
BciT130I	CCWGG	4 cut(s)	489, 552, 775, 804
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	4 cut(s)	80, 151, 546, 815
BfaI	CTAG	1 cut(s)	779
BfrI	CTTAAG	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	750
BisI	GCNGC	5 cut(s)	24, 163, 444, 659, 867
BlsI	GCNGC	5 cut(s)	25, 164, 445, 660, 868
Bme1390I	CCNGG	5 cut(s)	489, 552, 575, 775, 804
Bme18I	GGWCC	2 cut(s)	491, 766
BmgT120I	GGNCC	3 cut(s)	491, 631, 766
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	5 cut(s)	489, 552, 575, 775, 804
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	193, 325
BmuI	ACTGGG	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	3 cut(s)	494, 554, 872
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	463, 514, 550
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 245, 556, 616
Bse118I	RCCGGY	2 cut(s)	238, 284
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	294, 603
BseBI	CCWGG	4 cut(s)	489, 552, 775, 804
BseDI	CCNNGG	3 cut(s)	463, 514, 550
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	4 cut(s)	225, 245, 556, 616
BseMI	GCAATG	2 cut(s)	294, 603
BseMII	CTCAG	2 cut(s)	62, 292
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	4 cut(s)	35, 149, 430, 670
BsgI	GTGCAG	2 cut(s)	161, 768
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	242, 632, 744
BshNI	GGYRCC	1 cut(s)	577
BsiEI	CGRYCG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	4 cut(s)	239, 246, 285, 574
BslFI	GGGAC	2 cut(s)	287, 614
BslI	CCNNNNNNNGG	4 cut(s)	225, 245, 556, 616
BsmAI	GTCTC	4 cut(s)	80, 151, 546, 815
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	287, 614
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	3 cut(s)	242, 632, 744
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	5 cut(s)	109, 206, 436, 610, 654
BspANI	GGCC	3 cut(s)	242, 632, 744
BspCNI	CTCAG	2 cut(s)	63, 291
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	294, 603
BsrFI	RCCGGY	2 cut(s)	238, 284
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	2 cut(s)	238, 284
BssECI	CCNNGG	3 cut(s)	463, 514, 550
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	4 cut(s)	489, 552, 775, 804
Bst4CI	ACNGT	4 cut(s)	139, 587, 760, 826
Bst6I	CTCTTC	3 cut(s)	165, 255, 813
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	6 cut(s)	113, 286, 331, 610, 656, 751
BstDEI	CTNAG	3 cut(s)	71, 278, 650
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	117, 644
BstMAI	GTCTC	4 cut(s)	80, 151, 546, 815
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 139, 248, 272, 281, 330, 335, 750
BstNI	CCWGG	4 cut(s)	489, 552, 775, 804
BstSCI	CCNGG	5 cut(s)	487, 550, 573, 773, 802
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	35, 149, 430, 670
BsuRI	GGCC	3 cut(s)	242, 632, 744
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	2 cut(s)	216, 348
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	144, 255, 360
Cac8I	GCNNGC	6 cut(s)	113, 286, 331, 610, 656, 751
CaiI	CAGNNNCTG	1 cut(s)	494
CfoI	GCGC	2 cut(s)	117, 644
Cfr10I	RCCGGY	2 cut(s)	238, 284
Cfr13I	GGNCC	3 cut(s)	491, 631, 766
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	506, 787
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	1 cut(s)	464
CviQI	GTAC	2 cut(s)	506, 787
DdeI	CTNAG	3 cut(s)	71, 278, 650
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	3 cut(s)	165, 255, 813
EarI	CTCTTC	3 cut(s)	165, 255, 813
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	491, 766
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	2 cut(s)	279, 723
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	4 cut(s)	487, 550, 773, 802
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	846
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	1 cut(s)	467
FaiI	YATR	7 cut(s)	367, 369, 390, 465, 566, 712, 714
FaqI	GGGAC	2 cut(s)	287, 614
FatI	CATG	1 cut(s)	463
FauI	CCCGC	3 cut(s)	199, 617, 647
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	24, 163, 444, 659, 867
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	5 cut(s)	24, 163, 444, 659, 867
FspBI	CTAG	1 cut(s)	779
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	2 cut(s)	116, 643
GluI	GCNGC	5 cut(s)	24, 163, 444, 659, 867
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	242, 632, 744
HapII	CCGG	4 cut(s)	239, 246, 285, 574
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	2 cut(s)	117, 644
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	2 cut(s)	115, 642
HinP1I	GCGC	2 cut(s)	115, 642
HinfI	GANTC	6 cut(s)	73, 358, 478, 521, 570, 793
HpaII	CCGG	4 cut(s)	239, 246, 285, 574
HphI	GGTGA	2 cut(s)	95, 763
Hpy166II	GTNNAC	3 cut(s)	386, 718, 766
Hpy188I	TCNGA	4 cut(s)	72, 281, 363, 546
Hpy188III	TCNNGA	3 cut(s)	79, 533, 851
Hpy8I	GTNNAC	3 cut(s)	386, 718, 766
HpyAV	CCTTC	3 cut(s)	494, 747, 854
HpyCH4III	ACNGT	4 cut(s)	139, 587, 760, 826
HpyCH4IV	ACGT	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 139, 248, 272, 281, 330, 335, 750
HpyF3I	CTNAG	3 cut(s)	71, 278, 650
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	2 cut(s)	115, 642
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	248, 863
Lsp1109I	GCAGC	4 cut(s)	35, 149, 430, 670
LweI	GCATC	2 cut(s)	193, 325
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	496, 587
MboII	GAAGA	5 cut(s)	182, 272, 788, 830, 869
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	119, 405
MlyI	GAGTC	3 cut(s)	82, 530, 579
Mph1103I	ATGCAT	1 cut(s)	846
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	4 cut(s)	95, 375, 432, 874
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	4 cut(s)	239, 246, 285, 574
MspR9I	CCNGG	5 cut(s)	489, 552, 575, 775, 804
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	4 cut(s)	489, 552, 775, 804
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	8 cut(s)	20, 139, 248, 272, 281, 330, 335, 750
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	712
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	1 cut(s)	579
NsbI	TGCGCA	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	846
PctI	GAATGC	1 cut(s)	844
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	358, 478, 793
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	5 cut(s)	25, 164, 445, 660, 868
PleI	GAGTC	3 cut(s)	81, 529, 578
PpsI	GAGTC	3 cut(s)	81, 529, 578
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	4 cut(s)	487, 550, 773, 802
PspGI	CCWGG	4 cut(s)	487, 550, 773, 802
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	3 cut(s)	491, 631, 766
PspPPI	RGGWCCY	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	507, 788
RsaNI	GTAC	2 cut(s)	506, 787
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	4 cut(s)	95, 375, 432, 874
SatI	GCNGC	5 cut(s)	24, 163, 444, 659, 867
Sau96I	GGNCC	3 cut(s)	491, 631, 766
SchI	GAGTC	3 cut(s)	82, 530, 579
ScrFI	CCNGG	5 cut(s)	489, 552, 575, 775, 804
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	193, 325
SinI	GGWCC	2 cut(s)	491, 766
SmlI	CTYRAG	4 cut(s)	431, 473, 533, 851
SmoI	CTYRAG	4 cut(s)	431, 473, 533, 851
Sse9I	AATT	2 cut(s)	119, 405
SsiI	CCGC	5 cut(s)	109, 206, 436, 610, 654
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	5 cut(s)	487, 550, 573, 773, 802
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	139, 587, 760, 826
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	3 cut(s)	235, 524, 799
TasI	AATT	2 cut(s)	119, 405
TatI	WGTACW	2 cut(s)	505, 786
TfiI	GAWTC	3 cut(s)	358, 478, 793
Tru1I	TTAA	4 cut(s)	95, 375, 432, 874
Tru9I	TTAA	4 cut(s)	95, 375, 432, 874
TscAI	CASTG	3 cut(s)	144, 262, 360
TseI	GCWGC	5 cut(s)	23, 162, 443, 658, 866
TspDTI	ATGAA	2 cut(s)	17, 583
TspRI	CASTG	3 cut(s)	144, 262, 360
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	491, 766
XspI	CTAG	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.