MD11G1134900.v1.1

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006151
Physical Location & Seq
Forward (+)
12414850 .. 12417416
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1134900.v1.1.491

Sequence Viewer

Length: 888 bp
ATGAACATTCCAACAAGAATCGCAGCCAGACTTCCCCTACTCGCCTCTCCTTCGCTTCCCTCCTCCTCTTCCTCCGCTCTCACCCTCCACAGCTTCTCCTCTGTATTCTCTCACCACCGCTTGCGCAAATTGGGCAATTTAGCGCCAACGGTGAACACCAGTAGATTGAAACGCTGCGTTGCGAAGAAGATGGCTTGGAGTTTGGAGAAGAGCGACGCGGGCGTTGAAACCCACTTGGGGGTGGTCCGGCCGGCCACTGAAGCTCACGCTGAAGAGGCCGTAGGAGCTCTCAGAGCCGGAAAAGTCATTGCCGTCCCCACCGATACGCTCTACGGCTTTGCTTGTGATGCTTGCTCTTTGGAAGCGGTGAATCGGATATATGAGATTAAAGGACGTAAGCATACAAGTCCTCTTGCAATTTGTGTTGGGGATGTTCCGGACATTGAGCGGTTTGCTGTCACAGACCATTTGCCCCATGGCTTGCTTGATGTTCTCCTTCCAGGACCCGTTACTCTTGTACTAAGCCGAGGGGAGTCGAGCATTCTTGAGAAGTCTTTAAACCCAGGATTGCATAGTATAGGAGTCCGAGTACCTGACTGTAACTTCATCAGGGACATTGCACGCGGACTGGGGAGTGCATTGGCCCTTACAAGTGCAAACCTGAGTGGGCAGCCAAGTAGTGTTTCCATCAAAGATTTTGAGAACCTCTGGGAACACTGTGCGTACGTTTACAATGGTGGTGTGCTTCCTTCAGGCCGTGCAGGCTCAACAGTTGTGGACCTCACCAGAATCGACAAGTACAAGATTCTTCGACCCGGAAGTGCGAGAGACGAAACTGTTGCAATTCTCGAAAGGTATTCTCTTGAGGAAGAAGGAACAGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

296

Amino Acids

31.55

Weight (kDa)

8.21

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 96 - 273 4.5e-45 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AccBSI CCGCTC 2 cut(s) 77, 448
AccII CGCG 2 cut(s) 218, 624
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 6 cut(s) 75, 118, 218, 365, 448, 624
AcoI YGGCCR 2 cut(s) 248, 252
AcuI CTGAAG 3 cut(s) 279, 291, 735
AfaI GTAC 4 cut(s) 519, 591, 725, 800
AfiI CCNNNNNNNGG 2 cut(s) 237, 238
AgsI TTSAA 2 cut(s) 169, 227
AjnI CCWGG 2 cut(s) 499, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 667, 699
AluBI AGCT 4 cut(s) 93, 263, 287, 881
AluI AGCT 4 cut(s) 93, 263, 287, 881
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 822
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 5 cut(s) 248, 252, 276, 642, 754
ApeKI GCWGC 3 cut(s) 23, 174, 670
AspLEI GCGC 2 cut(s) 126, 145
AspS9I GGNCC 4 cut(s) 244, 503, 643, 778
AsuC2I CCSGG 1 cut(s) 816
AsuHPI GGTGA 5 cut(s) 73, 104, 163, 379, 775
AvaII GGWCC 3 cut(s) 244, 503, 778
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 3 cut(s) 35, 161, 682
BccI CCATC 2 cut(s) 184, 695
BceAI ACGGC 4 cut(s) 263, 296, 349, 741
BcgI CGANNNNNNTGC 2 cut(s) 821, 855
BciT130I CCWGG 2 cut(s) 501, 564
BcnI CCSGG 1 cut(s) 816
BcoDI GTCTC 1 cut(s) 822
BfoI RGCGCY 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 3 cut(s) 24, 175, 671
BlsI GCNGC 3 cut(s) 25, 176, 672
Bme1390I CCNGG 3 cut(s) 501, 564, 816
Bme18I GGWCC 3 cut(s) 244, 503, 778
BmgT120I GGNCC 4 cut(s) 244, 503, 643, 778
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 3 cut(s) 501, 564, 816
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 638
BpuEI CTTGAG 2 cut(s) 566, 884
BpuMI CCSGG 1 cut(s) 816
BsaJI CCNNGG 3 cut(s) 475, 526, 562
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 238
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 159, 633
Bse3DI GCAATG 2 cut(s) 306, 615
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 501, 564
BseDI CCNNGG 3 cut(s) 475, 526, 562
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 237, 238
BseMI GCAATG 2 cut(s) 306, 615
BseMII CTCAG 2 cut(s) 304, 653
BseNI ACTGG 2 cut(s) 159, 633
BseRI GAGGAG 3 cut(s) 52, 55, 88
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 3 cut(s) 35, 161, 682
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 2 cut(s) 218, 624
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 5 cut(s) 250, 254, 278, 644, 756
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 5 cut(s) 247, 251, 297, 437, 816
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 299, 626
BslI CCNNNNNNNGG 2 cut(s) 237, 238
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 299, 626
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 5 cut(s) 250, 254, 278, 644, 756
Bsp1286I GDGCHC 1 cut(s) 289
Bsp13I TCCGGA 1 cut(s) 436
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 6 cut(s) 75, 118, 218, 365, 448, 624
BspANI GGCC 5 cut(s) 250, 254, 278, 644, 756
BspCNI CTCAG 2 cut(s) 303, 654
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 2 cut(s) 218, 624
BspLI GGNNCC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 203
BsrBI CCGCTC 2 cut(s) 77, 448
BsrDI GCAATG 2 cut(s) 306, 615
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 159, 633
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 475, 526, 562
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 501, 564
Bst4CI ACNGT 5 cut(s) 151, 599, 719, 772, 838
Bst6I CTCTTC 3 cut(s) 73, 203, 267
BstC8I GCNNGC 7 cut(s) 122, 220, 252, 352, 482, 622, 763
BstDEI CTNAG 3 cut(s) 290, 521, 662
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 2 cut(s) 218, 624
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 126, 145
BstMAI GTCTC 1 cut(s) 822
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 8 cut(s) 132, 219, 260, 275, 284, 293, 347, 762
BstNI CCWGG 2 cut(s) 501, 564
BstSCI CCNGG 3 cut(s) 499, 562, 814
BstUI CGCG 2 cut(s) 218, 624
BstV1I GCAGC 3 cut(s) 35, 161, 682
BstZI CGGCCG 1 cut(s) 248
BsuRI GGCC 5 cut(s) 250, 254, 278, 644, 756
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 255, 715
Cac8I GCNNGC 7 cut(s) 122, 220, 252, 352, 482, 622, 763
CfoI GCGC 2 cut(s) 126, 145
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 244, 503, 643, 778
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 518, 590, 724, 799
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 1 cut(s) 476
CviQI GTAC 4 cut(s) 518, 590, 724, 799
DdeI CTNAG 3 cut(s) 290, 521, 662
DraI TTTAAA 1 cut(s) 558
EaeI YGGCCR 2 cut(s) 248, 252
EagI CGGCCG 1 cut(s) 248
Eam1104I CTCTTC 3 cut(s) 73, 203, 267
EarI CTCTTC 3 cut(s) 73, 203, 267
Ecl136II GAGCTC 1 cut(s) 287
EclXI CGGCCG 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 244, 503, 778
Eco52I CGGCCG 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 3 cut(s) 279, 291, 735
EcoICRI GAGCTC 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 499, 562
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 1 cut(s) 479
FaiI YATR 6 cut(s) 379, 381, 402, 477, 573, 578
FaqI GGGAC 2 cut(s) 299, 626
FatI CATG 1 cut(s) 475
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 24, 175, 671
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 289
FseI GGCCGGCC 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 24, 175, 671
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 125, 144
GluI GCNGC 3 cut(s) 24, 175, 671
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 5 cut(s) 250, 254, 278, 644, 756
HapII CCGG 5 cut(s) 247, 251, 297, 437, 816
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 126, 145
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 2 cut(s) 124, 143
HinP1I GCGC 2 cut(s) 124, 143
HinfI GANTC 6 cut(s) 18, 370, 533, 582, 789, 805
HpaII CCGG 5 cut(s) 247, 251, 297, 437, 816
HphI GGTGA 5 cut(s) 73, 104, 163, 379, 775
Hpy166II GTNNAC 3 cut(s) 154, 730, 778
Hpy188I TCNGA 3 cut(s) 293, 375, 587
Hpy188III TCNNGA 4 cut(s) 437, 545, 848, 863
Hpy8I GTNNAC 3 cut(s) 154, 730, 778
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 60, 506, 759, 866
HpyCH4III ACNGT 5 cut(s) 151, 599, 719, 772, 838
HpyCH4IV ACGT 2 cut(s) 394, 726
HpyCH4V TGCA 7 cut(s) 416, 571, 620, 638, 656, 761, 842
HpyF10VI GCNNNNNNNGC 8 cut(s) 132, 219, 260, 275, 284, 293, 347, 762
HpyF3I CTNAG 3 cut(s) 290, 521, 662
HpySE526I ACGT 2 cut(s) 394, 726
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 2 cut(s) 124, 143
Kpn2I TCCGGA 1 cut(s) 436
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 3 cut(s) 35, 161, 682
LweI GCATC 1 cut(s) 337
MaeII ACGT 2 cut(s) 394, 726
MaeIII GTNAC 3 cut(s) 457, 508, 599
MbiI CCGCTC 2 cut(s) 77, 448
MboII GAAGA 7 cut(s) 60, 196, 199, 220, 284, 800, 881
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 4 cut(s) 128, 136, 417, 843
MlyI GAGTC 2 cut(s) 542, 591
MmeI TCCRAC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 250
MseI TTAA 3 cut(s) 387, 557, 886
MspI CCGG 5 cut(s) 247, 251, 297, 437, 816
MspR9I CCNGG 3 cut(s) 501, 564, 816
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 2 cut(s) 501, 564
MvnI CGCG 2 cut(s) 218, 624
MwoI GCNNNNNNNGC 8 cut(s) 132, 219, 260, 275, 284, 293, 347, 762
NaeI GCCGGC 1 cut(s) 252
NciI CCSGG 1 cut(s) 816
NcoI CCATGG 1 cut(s) 475
NgoMIV GCCGGC 1 cut(s) 250
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 505
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 457
NsbI TGCGCA 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 203
PctI GAATGC 1 cut(s) 540
PdiI GCCGGC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 18, 370, 789, 805
Pfl23II CGTACG 1 cut(s) 723
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 25, 176, 672
PleI GAGTC 2 cut(s) 541, 590
PpsI GAGTC 2 cut(s) 541, 590
PpuMI RGGWCCY 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 499, 562
PspGI CCWGG 2 cut(s) 499, 562
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 4 cut(s) 244, 503, 643, 778
PspPPI RGGWCCY 1 cut(s) 503
RigI GGCCGGCC 1 cut(s) 254
RsaI GTAC 4 cut(s) 519, 591, 725, 800
RsaNI GTAC 4 cut(s) 518, 590, 724, 799
SacI GAGCTC 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 387, 557, 886
SatI GCNGC 3 cut(s) 24, 175, 671
Sau96I GGNCC 4 cut(s) 244, 503, 643, 778
SchI GAGTC 2 cut(s) 542, 591
ScrFI CCNGG 3 cut(s) 501, 564, 816
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 3 cut(s) 244, 503, 778
SmlI CTYRAG 2 cut(s) 545, 863
SmoI CTYRAG 2 cut(s) 545, 863
Sse9I AATT 4 cut(s) 128, 136, 417, 843
SsiI CCGC 6 cut(s) 75, 118, 218, 365, 448, 624
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 499, 562, 814
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 5 cut(s) 151, 599, 719, 772, 838
TaiI ACGT 2 cut(s) 397, 729
TaqI TCGA 4 cut(s) 536, 792, 811, 849
TasI AATT 4 cut(s) 128, 136, 417, 843
TatI WGTACW 2 cut(s) 517, 798
TfiI GAWTC 4 cut(s) 18, 370, 789, 805
Tru1I TTAA 3 cut(s) 387, 557, 886
Tru9I TTAA 3 cut(s) 387, 557, 886
TscAI CASTG 2 cut(s) 262, 722
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 3 cut(s) 23, 174, 670
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 17, 595
TspRI CASTG 2 cut(s) 262, 722
VpaK11BI GGWCC 3 cut(s) 244, 503, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.