FvH4_3g32470

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006151
Physical Location & Seq
Reverse (-)
27753927 .. 27756277
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32470.t3

Sequence Viewer

Length: 861 bp
ATGAACATTCCAACCAAAATCGCAGGCAGATTTCCCCTATTCCTCTCTTCAGCTCCTCTCCTTCCCTCCTCCTCCTCCTGCTCTTCTCTTCCTTCCAGAGGCCTGCGCAGTTTGAGTTTAGTGCCTATACTCCACAGCCGCAGATTGAGACCCAAAATGGCTTGGAGCTTGGAGAAACTCGACGCCGCCGCCTTTGAAGTTACCCAGTTGGGAGTGGTTCGTCCGGCCACTGAAGCTCACGTTGACGAGGCTGTTGAGGCTCTTAGAGCTGGAAAAGTCATTGCTGTCCCGACTGACACGCTTTACGGCTTTGCCTGTGATGCTTGCTCTTTGGAAGCAGTTCATCGGATTTACGAGATCAAAGGGCGAAAGCACACGAGTCCTCTCGCAATTTGTGTTGGGGATGTGCTGGACATTACGCGCTTTGCTGTCACTGATCACTTGCCTCATGGCTTGCTTGAGTCTCTCCTCCCGGGACCTGTTACTCTCGTGCTGAGACGAGGGGAGTCGAGTATGCTTGAGAAGTCTTTGAACCCCGGATTGGAAAGTATAGGAGTTAGAGTGCCAGACTGTAACTTCATCAGGGGGATTGCCCGGGAACTTGGGAGTGCATTGGCCCTTACCAGTGCAAACCTAAGCGGGCAGCCTAGTAGTGTTAGCATCAAGGATTTCGAGAACCTCTGGGAACATTGTGCGTATGTTTATCAGGGTGGCGTGCTTCCTTCAGGCCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTGGGAAAGTTCAAGATTCTTAGATCTGGAAGTGCAAGGGAAGAGACTGTTGCTATCCTTGAAAGGCATTCTCTTGAAGAAGAAGGACCGTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

287

Amino Acids

30.73

Weight (kDa)

7.68

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 86 - 264 1.4e-45 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccII CGCG 1 cut(s) 421
AciI CCGC 4 cut(s) 139, 186, 189, 639
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 3 cut(s) 33, 252, 708
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 98, 541
AgsI TTSAA 5 cut(s) 197, 532, 775, 824, 839
AjnI CCWGG 1 cut(s) 758
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 4 cut(s) 53, 168, 236, 269
AluI AGCT 4 cut(s) 53, 168, 236, 269
Alw26I GTCTC 4 cut(s) 142, 468, 490, 800
Ama87I CYCGRG 2 cut(s) 472, 594
AoxI GGCC 4 cut(s) 100, 225, 615, 727
ApeKI GCWGC 1 cut(s) 643
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 108, 423
AspS9I GGNCC 4 cut(s) 476, 616, 751, 848
AsuC2I CCSGG 5 cut(s) 473, 474, 537, 595, 596
AvaI CYCGRG 2 cut(s) 472, 594
AvaII GGWCC 3 cut(s) 476, 751, 848
BauI CACGAG 2 cut(s) 376, 488
BbvI GCAGC 1 cut(s) 655
BceAI ACGGC 2 cut(s) 322, 714
BciT130I CCWGG 1 cut(s) 760
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 5 cut(s) 473, 474, 537, 595, 596
BcoDI GTCTC 4 cut(s) 142, 468, 490, 800
BfaI CTAG 2 cut(s) 648, 855
BglI GCCNNNNNGGC 1 cut(s) 735
BglII AGATCT 1 cut(s) 785
BisI GCNGC 4 cut(s) 139, 186, 189, 644
BlsI GCNGC 4 cut(s) 140, 187, 190, 645
Bme1390I CCNGG 6 cut(s) 473, 474, 537, 595, 596, 760
Bme18I GGWCC 3 cut(s) 476, 751, 848
BmeT110I CYCGRG 2 cut(s) 472, 594
BmgT120I GGNCC 4 cut(s) 476, 616, 751, 848
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 6 cut(s) 473, 474, 537, 595, 596, 760
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 310, 669
BmuI ACTGGG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 2 cut(s) 479, 539
BpuMI CCSGG 5 cut(s) 473, 474, 537, 595, 596
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 472, 535, 594
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 541
Bse1I ACTGG 2 cut(s) 205, 624
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 760
BseDI CCNNGG 3 cut(s) 472, 535, 594
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 98, 541
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 205, 624
BseRI GAGGAG 5 cut(s) 45, 58, 61, 64, 458
BseXI GCAGC 1 cut(s) 655
BseYI CCCAGC 1 cut(s) 763
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 421
BshFI GGCC 4 cut(s) 102, 227, 617, 729
BsiHKCI CYCGRG 2 cut(s) 472, 594
BsiSI CCGG 4 cut(s) 224, 473, 537, 595
BslFI GGGAC 2 cut(s) 272, 489
BslI CCNNNNNNNGG 2 cut(s) 98, 541
BsmAI GTCTC 4 cut(s) 142, 468, 490, 800
BsmBI CGTCTC 1 cut(s) 490
BsmFI GGGAC 2 cut(s) 272, 489
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 4 cut(s) 102, 227, 617, 729
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 2 cut(s) 472, 594
Bsp143I GATC 3 cut(s) 357, 436, 785
BspACI CCGC 4 cut(s) 139, 186, 189, 639
BspANI GGCC 4 cut(s) 102, 227, 617, 729
BspCNI CTCAG 1 cut(s) 486
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 2 cut(s) 205, 624
BssECI CCNNGG 3 cut(s) 472, 535, 594
BssMI GATC 3 cut(s) 357, 436, 785
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 2 cut(s) 376, 488
Bst2BI CACGAG 2 cut(s) 376, 488
Bst2UI CCWGG 1 cut(s) 760
Bst4CI ACNGT 4 cut(s) 572, 745, 811, 852
Bst6I CTCTTC 4 cut(s) 52, 88, 93, 798
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 7 cut(s) 25, 104, 325, 455, 641, 716, 736
BstDEI CTNAG 4 cut(s) 263, 494, 635, 782
BstENI CCTNNNNNAGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 2 cut(s) 108, 423
BstKTI GATC 3 cut(s) 360, 439, 788
BstMAI GTCTC 4 cut(s) 142, 468, 490, 800
BstMBI GATC 3 cut(s) 357, 436, 785
BstMWI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 320, 735
BstNI CCWGG 1 cut(s) 760
BstSCI CCNGG 6 cut(s) 471, 472, 535, 593, 594, 758
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
BsuRI GGCC 4 cut(s) 102, 227, 617, 729
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 3 cut(s) 228, 432, 631
Cac8I GCNNGC 7 cut(s) 25, 104, 325, 455, 641, 716, 736
CfoI GCGC 2 cut(s) 108, 423
Cfr13I GGNCC 4 cut(s) 476, 616, 751, 848
Cfr9I CCCGGG 2 cut(s) 472, 594
CseI GACGC 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 1 cut(s) 449
DdeI CTNAG 4 cut(s) 263, 494, 635, 782
DpnI GATC 3 cut(s) 359, 438, 787
DpnII GATC 3 cut(s) 357, 436, 785
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 4 cut(s) 52, 88, 93, 798
EarI CTCTTC 4 cut(s) 52, 88, 93, 798
Eco147I AGGCCT 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 476, 751, 848
Eco57I CTGAAG 3 cut(s) 33, 252, 708
Eco88I CYCGRG 2 cut(s) 472, 594
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 758
Esp3I CGTCTC 1 cut(s) 490
FaeI CATG 1 cut(s) 452
FaiI YATR 5 cut(s) 128, 450, 515, 551, 699
FaqI GGGAC 2 cut(s) 272, 489
FatI CATG 1 cut(s) 448
FauI CCCGC 1 cut(s) 632
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 139, 186, 189, 644
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 4 cut(s) 139, 186, 189, 644
FspBI CTAG 2 cut(s) 648, 855
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 422
GluI GCNGC 4 cut(s) 139, 186, 189, 644
GsaI CCCAGC 1 cut(s) 767
HaeIII GGCC 4 cut(s) 102, 227, 617, 729
HapII CCGG 4 cut(s) 224, 473, 537, 595
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 108, 423
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 2 cut(s) 106, 421
HinP1I GCGC 2 cut(s) 106, 421
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 4 cut(s) 379, 461, 506, 778
HpaII CCGG 4 cut(s) 224, 473, 537, 595
Hpy166II GTNNAC 2 cut(s) 244, 751
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 6 cut(s) 96, 289, 673, 775, 789, 836
Hpy8I GTNNAC 2 cut(s) 244, 751
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 4 cut(s) 71, 102, 732, 839
HpyCH4III ACNGT 4 cut(s) 572, 745, 811, 852
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 611, 629, 734, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 320, 735
HpyF3I CTNAG 4 cut(s) 263, 494, 635, 782
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 2 cut(s) 106, 421
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 3 cut(s) 357, 436, 785
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 58, 165
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 2 cut(s) 310, 669
MaeI CTAG 2 cut(s) 648, 855
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 4 cut(s) 199, 430, 481, 572
MalI GATC 3 cut(s) 359, 438, 787
MboI GATC 3 cut(s) 357, 436, 785
MboII GAAGA 6 cut(s) 39, 75, 80, 815, 851, 854
MflI RGATCY 1 cut(s) 785
MluCI AATT 1 cut(s) 390
MlyI GAGTC 3 cut(s) 388, 470, 515
MmeI TCCRAC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 859
MspI CCGG 4 cut(s) 224, 473, 537, 595
MspR9I CCNGG 6 cut(s) 473, 474, 537, 595, 596, 760
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 760
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 320, 735
NciI CCSGG 5 cut(s) 473, 474, 537, 595, 596
NdeII GATC 3 cut(s) 357, 436, 785
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 430
NsbI TGCGCA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 88
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 778
PkrI GCNGC 4 cut(s) 140, 187, 190, 645
PleI GAGTC 3 cut(s) 387, 469, 514
PpsI GAGTC 3 cut(s) 387, 469, 514
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 758
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 4 cut(s) 476, 616, 751, 848
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 1 cut(s) 785
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 859
SatI GCNGC 4 cut(s) 139, 186, 189, 644
Sau3AI GATC 3 cut(s) 357, 436, 785
Sau96I GGNCC 4 cut(s) 476, 616, 751, 848
SchI GAGTC 3 cut(s) 388, 470, 515
ScrFI CCNGG 6 cut(s) 473, 474, 537, 595, 596, 760
SetI ASST 9 cut(s) 55, 170, 238, 243, 271, 481, 636, 681, 756
SfaNI GCATC 2 cut(s) 310, 669
SinI GGWCC 3 cut(s) 476, 751, 848
SmaI CCCGGG 2 cut(s) 474, 596
SmlI CTYRAG 2 cut(s) 458, 518
SmoI CTYRAG 2 cut(s) 458, 518
Sse9I AATT 1 cut(s) 390
SseBI AGGCCT 1 cut(s) 102
SsiI CCGC 4 cut(s) 139, 186, 189, 639
SspMI CTAG 2 cut(s) 648, 855
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 6 cut(s) 471, 472, 535, 593, 594, 758
TaaI ACNGT 4 cut(s) 572, 745, 811, 852
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 180, 509, 672
TasI AATT 1 cut(s) 390
TauI GCSGC 3 cut(s) 141, 188, 191
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 1 cut(s) 859
Tru9I TTAA 1 cut(s) 859
TscAI CASTG 3 cut(s) 235, 439, 631
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 643
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 17, 332, 568
TspMI CCCGGG 2 cut(s) 472, 594
TspRI CASTG 3 cut(s) 235, 439, 631
VpaK11BI GGWCC 3 cut(s) 476, 751, 848
XagI CCTNNNNNAGG 1 cut(s) 96
XmaI CCCGGG 2 cut(s) 472, 594
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 648, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.