MD03G1117100.v1.1

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0006151
Physical Location & Seq
Forward (+)
10543925 .. 10546286
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1117100.v1.1.491

Sequence Viewer

Length: 852 bp
ATGTACATTCCAACAAGAATCGCAGCCAGACTTCCCCTACTCGCCTCTCCTTCGCTTCCCTCCTCTTTATTCTCTCACCACCGCGTGCGCAAATTGGGTAATTTAACGCCAACAGTGCACATCATTAGATTGAAACGCTGCGCTGCGAAGAAGATGGCTTGGAGTTTGAAGAAGAGCGACGCGGGGGTTGAAACCCACTTGGGGGTGGTCCGTCCGGCCACTGAAGCTCACGCTGAAGAGGCCGTCGGAGCTCTCAGAGCCGGAGAAGTCATTGCCGTCCCCACCGATACGCTGTACGGCTTCGCTTGTGATGCTTGCTCTTTGGAAGCAGTGAACCGAATATATGAGATTAAAGGACGTAAGCATACAAGTCCTCTTGCAATTTGTGTTGGGGATGTTCCGGACATTGAGCGGTTTGCTGTCACAGACCATTTGCCCCATGGCTTGCTTGAGGCTCTCCTTCCAGGACCCGTTACTCTTGTACTAAGCCGAGGGGAGTCAAGTATTCTTGAGAAGTCTTTAAACCCAGGATTGGAGAGTATAGGAGTCCGAGTACCTGACTGTAACTTCATCAGGGACATTGCACGCAAATTGGGGAGTGCATTGGCCCTTACAAGTGCAAACCTAAGTGGGCAGCCAAGTAGTGTTTCCATCAAAGATTTTGAGAACCTCTGGGAACACTGTGCGTACGTTTACAATGGTGGTGTGCTTCCTTCAGGCCGTGCAGGCTCAACAGTTGTGGACCTCACCAGACTCGACAGGTACAAGATTCTTCGACCCGGAAGTGCGAGAGACGAAACTGTTGCAATTCTCGGAAGGTTTTCTCTTGAGGAAGAAGGAACAGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

284

Amino Acids

30.44

Weight (kDa)

8.52

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 84 - 261 3.6e-46 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 412
AccII CGCG 2 cut(s) 84, 182
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 3 cut(s) 82, 182, 412
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 3 cut(s) 243, 255, 699
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 6 cut(s) 5, 296, 483, 555, 689, 764
AfiI CCNNNNNNNGG 3 cut(s) 201, 202, 532
AgsI TTSAA 3 cut(s) 133, 169, 191
AjnI CCWGG 2 cut(s) 463, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AluBI AGCT 3 cut(s) 227, 251, 845
AluI AGCT 3 cut(s) 227, 251, 845
Alw21I GWGCWC 2 cut(s) 120, 253
Alw26I GTCTC 1 cut(s) 786
Alw44I GTGCAC 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 4 cut(s) 216, 240, 606, 718
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 23, 138, 143, 634
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 2 cut(s) 90, 143
AspS9I GGNCC 4 cut(s) 208, 467, 607, 742
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 2 cut(s) 68, 739
AvaII GGWCC 3 cut(s) 208, 467, 742
BaeGI GKGCMC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 120, 253
BbvI GCAGC 4 cut(s) 35, 125, 130, 646
BccI CCATC 2 cut(s) 148, 659
BceAI ACGGC 4 cut(s) 227, 260, 313, 705
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 2 cut(s) 465, 528
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 786
BglI GCCNNNNNGGC 1 cut(s) 726
BisI GCNGC 4 cut(s) 24, 139, 144, 635
BlsI GCNGC 4 cut(s) 25, 140, 145, 636
Bme1390I CCNGG 3 cut(s) 465, 528, 780
Bme18I GGWCC 3 cut(s) 208, 467, 742
BmgT120I GGNCC 4 cut(s) 208, 467, 607, 742
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 3 cut(s) 465, 528, 780
BmsI GCATC 1 cut(s) 301
BpuEI CTTGAG 3 cut(s) 470, 530, 848
BpuMI CCSGG 1 cut(s) 780
BsaJI CCNNGG 3 cut(s) 439, 490, 526
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 202, 532
Bse3DI GCAATG 2 cut(s) 270, 579
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 2 cut(s) 465, 528
BseDI CCNNGG 3 cut(s) 439, 490, 526
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 201, 202, 532
BseMI GCAATG 2 cut(s) 270, 579
BseMII CTCAG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 4 cut(s) 35, 125, 130, 646
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 2 cut(s) 84, 182
BshFI GGCC 4 cut(s) 218, 242, 608, 720
BsiHKAI GWGCWC 2 cut(s) 120, 253
BsiSI CCGG 4 cut(s) 215, 261, 401, 780
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 2 cut(s) 263, 590
BslI CCNNNNNNNGG 3 cut(s) 201, 202, 532
BsmAI GTCTC 1 cut(s) 786
BsmBI CGTCTC 1 cut(s) 786
BsmFI GGGAC 2 cut(s) 263, 590
BsnI GGCC 4 cut(s) 218, 242, 608, 720
Bsp1286I GDGCHC 2 cut(s) 120, 253
Bsp13I TCCGGA 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 439
BspACI CCGC 3 cut(s) 82, 182, 412
BspANI GGCC 4 cut(s) 218, 242, 608, 720
BspCNI CTCAG 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 2 cut(s) 84, 182
BspLI GGNNCC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 412
BsrDI GCAATG 2 cut(s) 270, 579
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 3 cut(s) 439, 490, 526
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 465, 528
Bst4CI ACNGT 5 cut(s) 115, 563, 683, 736, 802
Bst6I CTCTTC 2 cut(s) 167, 231
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 5 cut(s) 86, 316, 446, 586, 727
BstDEI CTNAG 3 cut(s) 254, 485, 626
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 2 cut(s) 84, 182
BstHHI GCGC 2 cut(s) 90, 143
BstMAI GTCTC 1 cut(s) 786
BstMWI GCNNNNNNNGC 7 cut(s) 115, 224, 239, 248, 257, 311, 726
BstNI CCWGG 2 cut(s) 465, 528
BstSCI CCNGG 3 cut(s) 463, 526, 778
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 2 cut(s) 84, 182
BstV1I GCAGC 4 cut(s) 35, 125, 130, 646
BsuRI GGCC 4 cut(s) 218, 242, 608, 720
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 4 cut(s) 120, 219, 336, 679
Cac8I GCNNGC 5 cut(s) 86, 316, 446, 586, 727
CfoI GCGC 2 cut(s) 90, 143
Cfr13I GGNCC 4 cut(s) 208, 467, 607, 742
CseI GACGC 1 cut(s) 188
Csp6I GTAC 6 cut(s) 4, 295, 482, 554, 688, 763
CspCI CAANNNNNGTGG 2 cut(s) 720, 755
CviAII CATG 1 cut(s) 440
CviQI GTAC 6 cut(s) 4, 295, 482, 554, 688, 763
DdeI CTNAG 3 cut(s) 254, 485, 626
DraI TTTAAA 1 cut(s) 522
DraIII CACNNNGTG 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 167, 231
EarI CTCTTC 2 cut(s) 167, 231
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 208, 467, 742
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 3 cut(s) 243, 255, 699
EcoICRI GAGCTC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 463, 526
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 1 cut(s) 443
FaiI YATR 5 cut(s) 343, 345, 366, 441, 542
FaqI GGGAC 2 cut(s) 263, 590
FatI CATG 1 cut(s) 439
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 24, 139, 144, 635
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 4 cut(s) 24, 139, 144, 635
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 2 cut(s) 89, 142
GluI GCNGC 4 cut(s) 24, 139, 144, 635
HaeIII GGCC 4 cut(s) 218, 242, 608, 720
HapII CCGG 4 cut(s) 215, 261, 401, 780
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 90, 143
Hin1II CATG 1 cut(s) 443
Hin6I GCGC 2 cut(s) 88, 141
HinP1I GCGC 2 cut(s) 88, 141
HinfI GANTC 5 cut(s) 18, 497, 546, 753, 769
HpaII CCGG 4 cut(s) 215, 261, 401, 780
HphI GGTGA 2 cut(s) 68, 739
Hpy166II GTNNAC 4 cut(s) 118, 334, 694, 742
Hpy188I TCNGA 4 cut(s) 248, 257, 551, 815
Hpy188III TCNNGA 3 cut(s) 401, 509, 827
Hpy8I GTNNAC 4 cut(s) 118, 334, 694, 742
Hpy99I CGWCG 2 cut(s) 182, 248
HpyAV CCTTC 5 cut(s) 60, 470, 723, 810, 830
HpyCH4III ACNGT 5 cut(s) 115, 563, 683, 736, 802
HpyCH4IV ACGT 2 cut(s) 358, 690
HpyCH4V TGCA 7 cut(s) 118, 380, 584, 602, 620, 725, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 224, 239, 248, 257, 311, 726
HpyF3I CTNAG 3 cut(s) 254, 485, 626
HpySE526I ACGT 2 cut(s) 358, 690
Hsp92II CATG 1 cut(s) 443
HspAI GCGC 2 cut(s) 88, 141
Kpn2I TCCGGA 1 cut(s) 400
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 35, 125, 130, 646
LweI GCATC 1 cut(s) 301
MaeII ACGT 2 cut(s) 358, 690
MaeIII GTNAC 3 cut(s) 421, 472, 563
MbiI CCGCTC 1 cut(s) 412
MboII GAAGA 7 cut(s) 160, 163, 181, 184, 248, 764, 845
MhlI GDGCHC 2 cut(s) 120, 253
MluCI AATT 5 cut(s) 92, 100, 381, 590, 807
MlyI GAGTC 3 cut(s) 506, 555, 747
MmeI TCCRAC 2 cut(s) 35, 226
MroI TCCGGA 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 820
MseI TTAA 4 cut(s) 104, 351, 521, 850
MspI CCGG 4 cut(s) 215, 261, 401, 780
MspR9I CCNGG 3 cut(s) 465, 528, 780
MvaI CCWGG 2 cut(s) 465, 528
MvnI CGCG 2 cut(s) 84, 182
MwoI GCNNNNNNNGC 7 cut(s) 115, 224, 239, 248, 257, 311, 726
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 1 cut(s) 439
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 2 cut(s) 18, 769
Pfl23II CGTACG 1 cut(s) 687
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 4 cut(s) 25, 140, 145, 636
PleI GAGTC 3 cut(s) 505, 554, 747
PpsI GAGTC 3 cut(s) 505, 554, 747
PpuMI RGGWCCY 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 463, 526
PspGI CCWGG 2 cut(s) 463, 526
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 4 cut(s) 208, 467, 607, 742
PspPPI RGGWCCY 1 cut(s) 467
RsaI GTAC 6 cut(s) 5, 296, 483, 555, 689, 764
RsaNI GTAC 6 cut(s) 4, 295, 482, 554, 688, 763
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 4 cut(s) 104, 351, 521, 850
SatI GCNGC 4 cut(s) 24, 139, 144, 635
Sau96I GGNCC 4 cut(s) 208, 467, 607, 742
SchI GAGTC 3 cut(s) 506, 555, 747
ScrFI CCNGG 3 cut(s) 465, 528, 780
SduI GDGCHC 2 cut(s) 120, 253
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 3 cut(s) 208, 467, 742
SmlI CTYRAG 3 cut(s) 449, 509, 827
SmoI CTYRAG 3 cut(s) 449, 509, 827
Sse9I AATT 5 cut(s) 92, 100, 381, 590, 807
SsiI CCGC 3 cut(s) 82, 182, 412
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 463, 526, 778
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 5 cut(s) 115, 563, 683, 736, 802
TaiI ACGT 2 cut(s) 361, 693
TaqI TCGA 2 cut(s) 756, 775
TasI AATT 5 cut(s) 92, 100, 381, 590, 807
TatI WGTACW 2 cut(s) 3, 481
TfiI GAWTC 2 cut(s) 18, 769
Tru1I TTAA 4 cut(s) 104, 351, 521, 850
Tru9I TTAA 4 cut(s) 104, 351, 521, 850
TscAI CASTG 4 cut(s) 120, 226, 336, 686
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 4 cut(s) 23, 138, 143, 634
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 559
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 4 cut(s) 120, 226, 336, 686
VneI GTGCAC 1 cut(s) 116
VpaK11BI GGWCC 3 cut(s) 208, 467, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.