Rw5G036520

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006151
Physical Location & Seq
Reverse (-)
64059870 .. 64061661
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036520.1

Sequence Viewer

Length: 864 bp
ATGAACGTTCCAACCAAAATCGCAGGCAGATTTCCCCTATTACTACTCTCTTCTGCTTCTCTGCTTCCCTCCTCCTCTCTTCGTCCCAGAGGCCTGCGCAGATTGGGTGTAGTGCCTATAGTCCGCAGCCGGAGATTGAAGCGCGGCGTTGGGCAGAAAATGGCTTGGAGCTTGGAGAAAGTCGACGCCGCCGGCGTTGAAATTTCTCAGCTGGGGGTTGTTCGTCCGGCGACTGAAGCTCATACCGAGGAGGCTGTTGAAGCTCTTAGATCTGGAAAAGTCATTGCAGTCCCCACGGATACGCTATACGGTTTTGCCTGTGATGCTTGTTCATTGGAAGCAGTTCATCGGATTTATGAGATTAAAGGGCGAAATCATACTAGTCCTCTCGCAATTTGTGTTGGGGATGTGCCGGATATTCAGCGCTTTGCTGTCACTGATCACTTGCCTCATGGCTTGCTGGAGTTTCTCCTTCCGGGACCTGTTACTCTTGTACTGAGACGAGGGGAGTCCAGTATGCTTGAGAAGTCTTTGAACCCTGGATTGGAAAGTATAGGAGTCAGAGTTCCAGACTGTAACTTCATCAGGGGGATTGCCCGTGGACTGGGGAGTGCATTGGCCCTTACCAGTGCAAACCTAAGTGGGCAGCCAAGTAGTGTTTGCATCAAAGATTTCGAGAACCTCTGGCAACATTGTGCGTATGTTTATCAGGGTGGTGTGCTTCCTTCAGGTCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTAGGCAAGTTCAAGATTCTTAGACCTGGAAGTGCAAGGGAAGAGACTGTTGCTATTCTTGAAAGGCATTCTCTTGAAGAAGAAGGATCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

287

Amino Acids

30.86

Weight (kDa)

9.11

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 87 - 265 5.9e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 98
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 124, 144, 189
AclI AACGTT 1 cut(s) 6
AclWI GGATC 1 cut(s) 859
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 2 cut(s) 255, 711
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 495
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 544, 604
AgsI TTSAA 7 cut(s) 139, 200, 260, 535, 778, 827, 842
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 3 cut(s) 538, 761, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AloI GAACNNNNNNTCC 2 cut(s) 549, 581
AluBI AGCT 4 cut(s) 171, 211, 239, 263
AluI AGCT 4 cut(s) 171, 211, 239, 263
Alw26I GTCTC 2 cut(s) 493, 803
AlwI GGATC 1 cut(s) 859
Aor51HI AGCGCT 1 cut(s) 425
AoxI GGCC 2 cut(s) 91, 618
ApeKI GCWGC 2 cut(s) 126, 646
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 3 cut(s) 99, 144, 426
AspS9I GGNCC 3 cut(s) 479, 619, 754
AsuC2I CCSGG 1 cut(s) 477
AvaII GGWCC 2 cut(s) 479, 754
BbvI GCAGC 2 cut(s) 138, 658
BciT130I CCWGG 3 cut(s) 540, 763, 792
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 493, 803
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 381, 767
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 292
BglII AGATCT 1 cut(s) 269
BisI GCNGC 4 cut(s) 127, 145, 189, 647
BlsI GCNGC 4 cut(s) 128, 146, 190, 648
Bme1390I CCNGG 4 cut(s) 477, 540, 763, 792
Bme18I GGWCC 2 cut(s) 479, 754
BmgT120I GGNCC 3 cut(s) 479, 619, 754
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 4 cut(s) 477, 540, 763, 792
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 313, 672
BmuI ACTGGG 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 246, 294, 538, 598
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 604
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 513, 609, 627
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 3 cut(s) 540, 763, 792
BseDI CCNNGG 4 cut(s) 246, 294, 538, 598
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 544, 604
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 221, 488
BseNI ACTGG 3 cut(s) 513, 609, 627
BseRI GAGGAG 3 cut(s) 61, 64, 263
BseXI GCAGC 2 cut(s) 138, 658
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 93, 620
BsiSI CCGG 5 cut(s) 130, 192, 227, 413, 476
BslFI GGGAC 3 cut(s) 69, 275, 492
BslI CCNNNNNNNGG 2 cut(s) 544, 604
BsmAI GTCTC 2 cut(s) 493, 803
BsmBI CGTCTC 1 cut(s) 493
BsmFI GGGAC 3 cut(s) 69, 275, 492
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 2 cut(s) 93, 620
Bsp143I GATC 3 cut(s) 269, 439, 851
BspACI CCGC 3 cut(s) 124, 144, 189
BspANI GGCC 2 cut(s) 93, 620
BspCNI CTCAG 2 cut(s) 220, 489
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 3 cut(s) 513, 609, 627
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 4 cut(s) 246, 294, 538, 598
BssMI GATC 3 cut(s) 269, 439, 851
BssNI GRCGYC 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 540, 763, 792
Bst4CI ACNGT 4 cut(s) 311, 575, 748, 814
Bst6I CTCTTC 3 cut(s) 55, 84, 801
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 5 cut(s) 25, 95, 193, 458, 739
BstDEI CTNAG 5 cut(s) 207, 266, 497, 638, 785
BstDSI CCRYGG 2 cut(s) 294, 598
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 3 cut(s) 99, 144, 426
BstKTI GATC 3 cut(s) 272, 442, 854
BstMAI GTCTC 2 cut(s) 493, 803
BstMBI GATC 3 cut(s) 269, 439, 851
BstMWI GCNNNNNNNGC 3 cut(s) 236, 260, 323
BstNI CCWGG 3 cut(s) 540, 763, 792
BstSCI CCNGG 4 cut(s) 475, 538, 761, 790
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 138, 658
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 93, 620
BtgI CCRYGG 2 cut(s) 294, 598
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 435, 634
Cac8I GCNNGC 5 cut(s) 25, 95, 193, 458, 739
CfoI GCGC 3 cut(s) 99, 144, 426
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 3 cut(s) 479, 619, 754
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 494
CspCI CAANNNNNGTGG 2 cut(s) 732, 767
CviAII CATG 1 cut(s) 452
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 5 cut(s) 207, 266, 497, 638, 785
DpnI GATC 3 cut(s) 271, 441, 853
DpnII GATC 3 cut(s) 269, 439, 851
Eam1104I CTCTTC 3 cut(s) 55, 84, 801
EarI CTCTTC 3 cut(s) 55, 84, 801
Eco147I AGGCCT 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 479, 754
Eco47III AGCGCT 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 255, 711
EcoO109I RGGNCCY 1 cut(s) 479
EcoRII CCWGG 3 cut(s) 538, 761, 790
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 1 cut(s) 455
FaiI YATR 9 cut(s) 119, 243, 307, 357, 378, 453, 518, 554, 702
FaqI GGGAC 3 cut(s) 69, 275, 492
FatI CATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 127, 145, 189, 647
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 4 cut(s) 127, 145, 189, 647
FspBI CTAG 2 cut(s) 381, 767
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 3 cut(s) 98, 143, 425
GluI GCNGC 4 cut(s) 127, 145, 189, 647
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 2 cut(s) 93, 620
HapII CCGG 5 cut(s) 130, 192, 227, 413, 476
HgaI GACGC 1 cut(s) 194
HhaI GCGC 3 cut(s) 99, 144, 426
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 455
Hin6I GCGC 3 cut(s) 97, 142, 424
HinP1I GCGC 3 cut(s) 97, 142, 424
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 509, 558, 781
HpaII CCGG 5 cut(s) 130, 192, 227, 413, 476
Hpy166II GTNNAC 3 cut(s) 184, 602, 754
Hpy188I TCNGA 2 cut(s) 351, 563
Hpy188III TCNNGA 6 cut(s) 273, 569, 676, 778, 824, 839
Hpy8I GTNNAC 3 cut(s) 184, 602, 754
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 482, 735, 842
HpyCH4III ACNGT 4 cut(s) 311, 575, 748, 814
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 6 cut(s) 287, 614, 632, 663, 737, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 260, 323
HpyF3I CTNAG 5 cut(s) 207, 266, 497, 638, 785
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 455
HspAI GCGC 3 cut(s) 97, 142, 424
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 269, 439, 851
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 138, 658
LweI GCATC 2 cut(s) 313, 672
MaeI CTAG 2 cut(s) 381, 767
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 433, 484, 575
MalI GATC 3 cut(s) 271, 441, 853
MboI GATC 3 cut(s) 269, 439, 851
MboII GAAGA 5 cut(s) 42, 71, 818, 854, 857
MflI RGATCY 1 cut(s) 269
MluCI AATT 2 cut(s) 201, 393
MlyI GAGTC 2 cut(s) 518, 567
MmeI TCCRAC 1 cut(s) 35
MreI CGCCGGCG 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 363, 862
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 5 cut(s) 130, 192, 227, 413, 476
MspR9I CCNGG 4 cut(s) 477, 540, 763, 792
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 3 cut(s) 540, 763, 792
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 236, 260, 323
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 477
NdeII GATC 3 cut(s) 269, 439, 851
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 1 cut(s) 433
NsbI TGCGCA 1 cut(s) 98
PceI AGGCCT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 781
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 4 cut(s) 128, 146, 190, 648
PleI GAGTC 2 cut(s) 517, 566
PpsI GAGTC 2 cut(s) 517, 566
PpuMI RGGWCCY 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 3 cut(s) 538, 761, 790
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 3 cut(s) 538, 761, 790
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 479, 619, 754
PspPPI RGGWCCY 1 cut(s) 479
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 363, 862
SatI GCNGC 4 cut(s) 127, 145, 189, 647
Sau3AI GATC 3 cut(s) 269, 439, 851
Sau96I GGNCC 3 cut(s) 479, 619, 754
SchI GAGTC 2 cut(s) 518, 567
ScrFI CCNGG 4 cut(s) 477, 540, 763, 792
SfaNI GCATC 2 cut(s) 313, 672
SfcI CTRYAG 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 2 cut(s) 479, 754
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 2 cut(s) 201, 393
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 3 cut(s) 124, 144, 189
SspMI CTAG 2 cut(s) 381, 767
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 475, 538, 761, 790
TaaI ACNGT 4 cut(s) 311, 575, 748, 814
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 183, 675
TasI AATT 2 cut(s) 201, 393
TatI WGTACW 1 cut(s) 493
TauI GCSGC 2 cut(s) 147, 191
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 2 cut(s) 363, 862
Tru9I TTAA 2 cut(s) 363, 862
TscAI CASTG 2 cut(s) 442, 634
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 126, 646
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 17, 321, 335, 571
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 442, 634
VpaK11BI GGWCC 2 cut(s) 479, 754
XapI RAATTY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 381, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.