RLG00000035296

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006151
Physical Location & Seq
Reverse (-)
64468680 .. 64470495
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035296

Sequence Viewer

Length: 861 bp
ATGAACGTTCCAACCAAAATCGCAGGCAGATTTCCCCTACTACTCTCTTCTGCTTCTCTGCTTCCCTCCTCCTCTCTTCGTCCCAGAGGCCTGCGCAGATTGGGTTTAGTGCCTATAGTCCGCAGCTGGAGATTGAAGCGCGGCGTTGAGCAGAAAATGGCTTGGAGCTTGGAGAAAGTGGACGCCGCCGGCGTTGAAATTTCTCAGTTGGGGGTTGTTCGTCCGGCGACTGAAGCTCATACCGAGGAGGCTATTGGAGCTCTTAAAGCTGGAAAAGTCATTGCAGTCCCTACGGATACTCTATACGGCTTTGCTTGCGATGCTTGTTCATTGGAAGCAGTTCATCGAATTTATGAGATTAAAGGGCGAAAGCATACGAGTCCTCTAGCAATTTGTGTTGGGGATGTGCCGGATATTCAGCGCTTTGCCATCACTGATCACTTGCCTCATGGCTTGCTTGAGAGTCTCCTTCCAGGACCCGTTACTCTCGTACTGGGACGAGGGGAGTCGAGTATGCTTGAGAAGTCTTTGAACCCTGGATTGGAAAGTATAGGAGTCAGAGTTCCGGACTGTAACTTCATCCGGGGGATTGCCCGTGGACTGGGGAGTGCATTGGCCCTTACCAGTGCAAACCTGAGCGGGCAGCCAAGTAGTGTTTGCATCAAAGATTTTGAGAACCTCTGGGAACATTGTGCTTATGTTTATCAAGGTGGTGTGCTTCCTTCAGGTCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTGGGCAAGTTCAAGATTCTTAGATCTGGAAGTGCAAGGGAAGAGACTGTTGCTATTCTTGAAAGGCATTCTCTTGAAGAAGTAGGATCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

287

Amino Acids

30.59

Weight (kDa)

8.93

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 87 - 264 1.2e-43 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 639
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 4 cut(s) 121, 141, 186, 639
AclI AACGTT 1 cut(s) 6
AclWI GGATC 1 cut(s) 856
AcsI RAATTY 2 cut(s) 198, 348
AcuI CTGAAG 2 cut(s) 252, 708
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 492
AfeI AGCGCT 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 541, 601
AgsI TTSAA 6 cut(s) 136, 197, 532, 775, 824, 839
AjnI CCWGG 3 cut(s) 472, 535, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 5 cut(s) 126, 168, 236, 260, 269
AluI AGCT 5 cut(s) 126, 168, 236, 260, 269
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 470, 800
AlwI GGATC 1 cut(s) 856
Aor13HI TCCGGA 1 cut(s) 565
Aor51HI AGCGCT 1 cut(s) 422
AoxI GGCC 2 cut(s) 88, 615
ApeKI GCWGC 2 cut(s) 123, 643
ApoI RAATTY 2 cut(s) 198, 348
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 3 cut(s) 96, 141, 423
AspS9I GGNCC 3 cut(s) 476, 616, 751
AsuC2I CCSGG 1 cut(s) 584
AvaII GGWCC 2 cut(s) 476, 751
BanII GRGCYC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 135, 655
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 3 cut(s) 474, 537, 760
BciVI GTATCC 1 cut(s) 289
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 470, 800
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 424
BfuI GTATCC 1 cut(s) 289
BglII AGATCT 1 cut(s) 785
BisI GCNGC 4 cut(s) 124, 142, 186, 644
BlsI GCNGC 4 cut(s) 125, 143, 187, 645
Bme1390I CCNGG 4 cut(s) 474, 537, 584, 760
Bme18I GGWCC 2 cut(s) 476, 751
BmgT120I GGNCC 3 cut(s) 476, 616, 751
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 4 cut(s) 474, 537, 584, 760
BmrI ACTGGG 2 cut(s) 503, 611
BmsI GCATC 2 cut(s) 310, 669
BmuI ACTGGG 2 cut(s) 503, 611
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 2 cut(s) 479, 539
BpuMI CCSGG 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 243, 535, 583, 595
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 601
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 498, 606, 624
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 3 cut(s) 474, 537, 760
BseDI CCNNGG 4 cut(s) 243, 535, 583, 595
BseGI GGATG 2 cut(s) 409, 579
BseLI CCNNNNNNNGG 2 cut(s) 541, 601
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 218, 626
BseNI ACTGG 3 cut(s) 498, 606, 624
BseRI GAGGAG 3 cut(s) 58, 61, 260
BseXI GCAGC 2 cut(s) 135, 655
BseYI CCCAGC 1 cut(s) 763
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 90, 617
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 5 cut(s) 189, 224, 410, 566, 583
BslFI GGGAC 3 cut(s) 66, 272, 510
BslI CCNNNNNNNGG 2 cut(s) 541, 601
BsmAI GTCTC 2 cut(s) 470, 800
BsmFI GGGAC 3 cut(s) 66, 272, 510
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 2 cut(s) 90, 617
Bsp1286I GDGCHC 1 cut(s) 262
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 3 cut(s) 436, 785, 848
BspACI CCGC 4 cut(s) 121, 141, 186, 639
BspANI GGCC 2 cut(s) 90, 617
BspCNI CTCAG 2 cut(s) 217, 627
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 1 cut(s) 856
BsrBI CCGCTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 3 cut(s) 498, 606, 624
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 243, 535, 583, 595
BssMI GATC 3 cut(s) 436, 785, 848
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 474, 537, 760
Bst4CI ACNGT 3 cut(s) 572, 745, 811
Bst6I CTCTTC 3 cut(s) 52, 81, 798
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 7 cut(s) 25, 92, 190, 316, 455, 641, 736
BstDEI CTNAG 3 cut(s) 204, 635, 782
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 2 cut(s) 409, 579
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 3 cut(s) 96, 141, 423
BstKTI GATC 3 cut(s) 439, 788, 851
BstMAI GTCTC 2 cut(s) 470, 800
BstMBI GATC 3 cut(s) 436, 785, 848
BstMWI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 315, 320
BstNI CCWGG 3 cut(s) 474, 537, 760
BstSCI CCNGG 4 cut(s) 472, 535, 582, 758
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 135, 655
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 90, 617
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 409, 579
BtsIMutI CAGTG 2 cut(s) 432, 631
Cac8I GCNNGC 7 cut(s) 25, 92, 190, 316, 455, 641, 736
CfoI GCGC 3 cut(s) 96, 141, 423
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 476, 616, 751
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 491
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 1 cut(s) 449
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 3 cut(s) 204, 635, 782
DpnI GATC 3 cut(s) 438, 787, 850
DpnII GATC 3 cut(s) 436, 785, 848
Eam1104I CTCTTC 3 cut(s) 52, 81, 798
EarI CTCTTC 3 cut(s) 52, 81, 798
Ecl136II GAGCTC 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 476, 751
Eco47III AGCGCT 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 2 cut(s) 252, 708
EcoICRI GAGCTC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 472, 535, 758
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 1 cut(s) 452
FaiI YATR 9 cut(s) 116, 240, 304, 354, 375, 450, 515, 551, 699
FaqI GGGAC 3 cut(s) 66, 272, 510
FatI CATG 1 cut(s) 448
FauI CCCGC 1 cut(s) 632
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 124, 142, 186, 644
FokI GGATG 2 cut(s) 416, 566
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 124, 142, 186, 644
FspBI CTAG 1 cut(s) 386
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 3 cut(s) 95, 140, 422
GluI GCNGC 4 cut(s) 124, 142, 186, 644
GsaI CCCAGC 1 cut(s) 767
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 2 cut(s) 90, 617
HapII CCGG 5 cut(s) 189, 224, 410, 566, 583
HgaI GACGC 1 cut(s) 191
HhaI GCGC 3 cut(s) 96, 141, 423
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 3 cut(s) 94, 139, 421
HinP1I GCGC 3 cut(s) 94, 139, 421
HinfI GANTC 5 cut(s) 379, 463, 506, 555, 778
HpaII CCGG 5 cut(s) 189, 224, 410, 566, 583
Hpy166II GTNNAC 3 cut(s) 181, 599, 751
Hpy188I TCNGA 1 cut(s) 560
Hpy188III TCNNGA 5 cut(s) 566, 775, 789, 821, 836
Hpy8I GTNNAC 3 cut(s) 181, 599, 751
HpyAV CCTTC 2 cut(s) 479, 732
HpyCH4III ACNGT 3 cut(s) 572, 745, 811
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 6 cut(s) 284, 611, 629, 660, 734, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 315, 320
HpyF3I CTNAG 3 cut(s) 204, 635, 782
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 3 cut(s) 94, 139, 421
Kpn2I TCCGGA 1 cut(s) 565
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 3 cut(s) 436, 785, 848
LmnI GCTCC 2 cut(s) 165, 257
Lsp1109I GCAGC 2 cut(s) 135, 655
LweI GCATC 2 cut(s) 310, 669
MaeI CTAG 1 cut(s) 386
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 481, 572
MalI GATC 3 cut(s) 438, 787, 850
MbiI CCGCTC 1 cut(s) 639
MboI GATC 3 cut(s) 436, 785, 848
MboII GAAGA 4 cut(s) 39, 68, 815, 851
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 3 cut(s) 198, 348, 390
MlyI GAGTC 4 cut(s) 388, 472, 515, 564
MmeI TCCRAC 1 cut(s) 35
MreI CGCCGGCG 1 cut(s) 188
MroI TCCGGA 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 3 cut(s) 264, 360, 859
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 5 cut(s) 189, 224, 410, 566, 583
MspR9I CCNGG 4 cut(s) 474, 537, 584, 760
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 3 cut(s) 474, 537, 760
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 233, 257, 266, 315, 320
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 584
NdeII GATC 3 cut(s) 436, 785, 848
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 478
NsbI TGCGCA 1 cut(s) 95
PceI AGGCCT 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 829
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 778
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 4 cut(s) 125, 143, 187, 645
PleI GAGTC 4 cut(s) 387, 471, 514, 563
PpsI GAGTC 4 cut(s) 387, 471, 514, 563
PpuMI RGGWCCY 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 262
Psp1406I AACGTT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 472, 535, 758
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 3 cut(s) 472, 535, 758
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 3 cut(s) 476, 616, 751
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 126
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 3 cut(s) 264, 360, 859
SatI GCNGC 4 cut(s) 124, 142, 186, 644
Sau3AI GATC 3 cut(s) 436, 785, 848
Sau96I GGNCC 3 cut(s) 476, 616, 751
SchI GAGTC 4 cut(s) 388, 472, 515, 564
ScrFI CCNGG 4 cut(s) 474, 537, 584, 760
SduI GDGCHC 1 cut(s) 262
SfaNI GCATC 2 cut(s) 310, 669
SfcI CTRYAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 2 cut(s) 476, 751
SmlI CTYRAG 2 cut(s) 458, 518
SmoI CTYRAG 2 cut(s) 458, 518
Sse9I AATT 3 cut(s) 198, 348, 390
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 4 cut(s) 121, 141, 186, 639
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 262
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 4 cut(s) 472, 535, 582, 758
TaaI ACNGT 3 cut(s) 572, 745, 811
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 346, 509
TasI AATT 3 cut(s) 198, 348, 390
TauI GCSGC 2 cut(s) 144, 188
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 3 cut(s) 264, 360, 859
Tru9I TTAA 3 cut(s) 264, 360, 859
TscAI CASTG 2 cut(s) 439, 631
TseI GCWGC 2 cut(s) 123, 643
TspDTI ATGAA 4 cut(s) 17, 318, 332, 568
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 2 cut(s) 439, 631
VpaK11BI GGWCC 2 cut(s) 476, 751
XapI RAATTY 2 cut(s) 198, 348
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.