Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8363017.1

Orthogroup ID

OG0006151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1089

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8363017.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

accgaggaggctgttgaagctcttagagctggaaaagtcattgcagtccccacggatacgctatacggttttgcctgtgatgcttgttcattggaagcagttcatcggatttatgagattaaagggcgaaatcatacgagtcctctcgcaatttgtgttggggatgtgccggatattcagcgctttgctgtcactgatcacttgcctcatggcttgcttgagtctctccttccaggacctgttactcttgtactgagacgaggggagtccagtatgcttgagaagtctttgaaccctggattggaaagtataggagtcagagttccggactgtaacttcatcagggggattgcccgtggactggggagtgcattggcccttaccagtgcaaatctaagtgggcagccaagtagtgtttgcatcaaagatttcgagaacctctggcaacattgtgcgtatgtttatcagggtggtgtgcttccttcaggtcgtgcaggctcaacagttgtggaccttgccaggctaggcaagttcaagattcttagacctggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sua5_yciO_yrdC

Protein Analysis

184

Amino Acids

19.6

Weight (kDa)

6.89

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60590 AT5G60590 AT5G60590
fragaria_vesca	FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470 FvH4_3g32470
malus_domestica	MD03G1117100.v1.1 MD11G1134900.v1.1
prunus_persica	Prupe.6G100900_v2.0.a1 Prupe.6G100900_v2.0.a1
pyrus_communis	pycom11g11200
rosa_chinensis	RchiOBHm_Chr5g0059481
rosa_laevigata	RLG00000035296
rosa_multiflora	Rmu_co8363017.1_g000001 Rmu_sc0001977.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021060
rosa_rugosa	Rorug05G0322900 Rorug05G0322900 Rorug05G0323000
rosa_samantha	Rh5AG387400 Rh5BG399000 Rh5CG422900 Rh5DG413700
rosa_wichuraiana	Rw5G036480 Rw5G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	252
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	301, 361
AgsI	TTSAA	3 cut(s)	17, 292, 535
AjnI	CCWGG	4 cut(s)	232, 295, 518, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	20, 29
AluI	AGCT	2 cut(s)	20, 29
Alw26I	GTCTC	2 cut(s)	228, 250
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	325
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	236, 376, 511
AvaII	GGWCC	2 cut(s)	236, 511
BbvI	GCAGC	1 cut(s)	415
BciT130I	CCWGG	4 cut(s)	234, 297, 520, 549
BciVI	GTATCC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	228, 250
BfaI	CTAG	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	4 cut(s)	234, 297, 520, 549
Bme18I	GGWCC	2 cut(s)	236, 511
BmgT120I	GGNCC	3 cut(s)	236, 376, 511
BmrFI	CCNGG	4 cut(s)	234, 297, 520, 549
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	70, 429
BmuI	ACTGGG	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	239, 299
BsaJI	CCNNGG	4 cut(s)	3, 51, 295, 355
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 361
Bse1I	ACTGG	3 cut(s)	270, 366, 384
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	4 cut(s)	234, 297, 520, 549
BseDI	CCNNGG	4 cut(s)	3, 51, 295, 355
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	301, 361
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	3 cut(s)	270, 366, 384
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	170, 326
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	301, 361
BsmAI	GTCTC	2 cut(s)	228, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	270, 366, 384
BssECI	CCNNGG	4 cut(s)	3, 51, 295, 355
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	4 cut(s)	234, 297, 520, 549
Bst4CI	ACNGT	3 cut(s)	68, 332, 505
BstC8I	GCNNGC	2 cut(s)	215, 496
BstDEI	CTNAG	4 cut(s)	23, 254, 395, 542
BstDSI	CCRYGG	2 cut(s)	51, 355
BstF5I	GGATG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	228, 250
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
BstNI	CCWGG	4 cut(s)	234, 297, 520, 549
BstSCI	CCNGG	4 cut(s)	232, 295, 518, 547
BstV1I	GCAGC	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	2 cut(s)	51, 355
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	192, 391
Cac8I	GCNNGC	2 cut(s)	215, 496
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	3 cut(s)	236, 376, 511
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	8 cut(s)	11, 20, 29, 213, 377, 406, 498, 523
CviKI_1	RGCY	8 cut(s)	11, 20, 29, 213, 377, 406, 498, 523
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	4 cut(s)	23, 254, 395, 542
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	236, 511
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	4 cut(s)	232, 295, 518, 547
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	212
FaiI	YATR	7 cut(s)	64, 114, 135, 210, 275, 311, 459
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	170, 326
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	5 cut(s)	139, 221, 266, 315, 538
HpaII	CCGG	2 cut(s)	170, 326
Hpy166II	GTNNAC	2 cut(s)	359, 511
Hpy188I	TCNGA	2 cut(s)	108, 320
Hpy188III	TCNNGA	3 cut(s)	326, 433, 535
Hpy8I	GTNNAC	2 cut(s)	359, 511
HpyAV	CCTTC	2 cut(s)	239, 492
HpyCH4III	ACNGT	3 cut(s)	68, 332, 505
HpyCH4V	TGCA	5 cut(s)	44, 371, 389, 420, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
HpyF3I	CTNAG	4 cut(s)	23, 254, 395, 542
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	70, 429
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	3 cut(s)	190, 241, 332
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	4 cut(s)	148, 230, 275, 324
MnlI	CCTC	4 cut(s)	153, 216, 254, 449
MroI	TCCGGA	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	120
MspI	CCGG	2 cut(s)	170, 326
MspR9I	CCNGG	4 cut(s)	234, 297, 520, 549
MvaI	CCWGG	4 cut(s)	234, 297, 520, 549
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	4 cut(s)	147, 229, 274, 323
PpsI	GAGTC	4 cut(s)	147, 229, 274, 323
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	4 cut(s)	232, 295, 518, 547
PspGI	CCWGG	4 cut(s)	232, 295, 518, 547
PspPI	GGNCC	3 cut(s)	236, 376, 511
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	236, 376, 511
SchI	GAGTC	4 cut(s)	148, 230, 275, 324
ScrFI	CCNGG	4 cut(s)	234, 297, 520, 549
SetI	ASST	7 cut(s)	22, 31, 241, 441, 490, 516, 550
SfaNI	GCATC	2 cut(s)	70, 429
SinI	GGWCC	2 cut(s)	236, 511
SmlI	CTYRAG	2 cut(s)	218, 278
SmoI	CTYRAG	2 cut(s)	218, 278
Sse9I	AATT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	4 cut(s)	232, 295, 518, 547
TaaI	ACNGT	3 cut(s)	68, 332, 505
TaqI	TCGA	1 cut(s)	432
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	199, 391
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	78, 92, 328
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	199, 391
VpaK11BI	GGWCC	2 cut(s)	236, 511
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.