RchiOBHm_Chr5g0059481

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006151
Physical Location & Seq
Reverse (-)
64397754 .. 64399991
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33608

Sequence Viewer

Length: 705 bp
ATGGCTTGGAGCTTGGAGAAAGTGGACGCCGCCGGCGTTGAAGTTTCTCAGTTGGGGGTTGTTCGTCCGGCGACTGAAGCTCATACCGAGGAGGCTATTGAAGCTCTTAAAGCTGGAAAAATCATTGCAGTCCCTACGGATACGCTATACGGCTTTGCCTGTGATGCTTGTTCATTGGAAGCAGTTCATCGGATTTATGAGGTTAAAGGGCGAAATCATACGAGTCCTCTCGCAATTTGTGTTGGGGATGTGCCGGATATTCAGCGCTTTGCTGTCACTGATCACTTGCCTCATGGCTTGCTTGAGTCTCTCCTTCCAGGACCTGTTACTCTTGTACTGAGACGAGGGGAGTCGAGTATGCTTGAGAAGTCTTTGAACCCTGGATTGGAAAGTATAGGAGTCAGAGTTCCGGACTGTAACTTCATCAGGGGGATTGCCCGTGGACTGGGGAGTGCATTGGCCCTTACCAGTGCAAACCTGAGCGGGCAGCCAAGTAGTGTTTGCATCAAAGATTTCGAGAACCTCTGGCAACATTGTGCGTATGTTTATCAGGGTGGTGTGCTTCCTTCAGGTCGTGCAGGCTCAACAGTTGTGGACCTTACCAGGCTAGGCAAGTTCAAGATTCTTAGACCTGGAAGTGCAAGGGAAGAGACTGTTGCTATTCTTGAAAGGCATTCTCTTGAAGAAGAAGGATCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

234

Amino Acids

24.97

Weight (kDa)

5.66

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 34 - 212 1.1e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 2 cut(s) 30, 483
AclWI GGATC 1 cut(s) 700
AcuI CTGAAG 2 cut(s) 96, 552
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 336
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 385, 445
AgsI TTSAA 6 cut(s) 41, 101, 376, 619, 668, 683
AjnI CCWGG 4 cut(s) 316, 379, 602, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 12, 80, 104, 113
AluI AGCT 4 cut(s) 12, 80, 104, 113
Alw26I GTCTC 3 cut(s) 312, 334, 644
AlwI GGATC 1 cut(s) 700
AlwNI CAGNNNCTG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 320, 460, 595
AvaII GGWCC 2 cut(s) 320, 595
BbvI GCAGC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 4 cut(s) 318, 381, 604, 633
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 312, 334, 644
BfaI CTAG 1 cut(s) 608
BfoI RGCGCY 1 cut(s) 268
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 30, 488
BlsI GCNGC 2 cut(s) 31, 489
Bme1390I CCNGG 4 cut(s) 318, 381, 604, 633
Bme18I GGWCC 2 cut(s) 320, 595
BmgT120I GGNCC 3 cut(s) 320, 460, 595
BmrFI CCNGG 4 cut(s) 318, 381, 604, 633
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 154, 513
BmuI ACTGGG 1 cut(s) 455
Bpu10I CCTNAGC 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 323, 383
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 87, 379, 439
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 445
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 450, 468
Bse3DI GCAATG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 4 cut(s) 318, 381, 604, 633
BseDI CCNNGG 3 cut(s) 87, 379, 439
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 385, 445
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 3 cut(s) 62, 329, 470
BseNI ACTGG 2 cut(s) 450, 468
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 1 cut(s) 461
BsiSI CCGG 4 cut(s) 33, 68, 254, 410
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 385, 445
BsmAI GTCTC 3 cut(s) 312, 334, 644
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 2 cut(s) 280, 692
BspACI CCGC 2 cut(s) 30, 483
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 3 cut(s) 61, 330, 471
BspEI TCCGGA 1 cut(s) 409
BspPI GGATC 1 cut(s) 700
BsrBI CCGCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 2 cut(s) 450, 468
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 87, 379, 439
BssMI GATC 2 cut(s) 280, 692
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 4 cut(s) 318, 381, 604, 633
Bst4CI ACNGT 3 cut(s) 416, 589, 655
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 34, 299, 485, 580
BstDEI CTNAG 4 cut(s) 48, 338, 479, 626
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 283, 695
BstMAI GTCTC 3 cut(s) 312, 334, 644
BstMBI GATC 2 cut(s) 280, 692
BstMWI GCNNNNNNNGC 4 cut(s) 77, 101, 110, 164
BstNI CCWGG 4 cut(s) 318, 381, 604, 633
BstSCI CCNGG 4 cut(s) 316, 379, 602, 631
BstV1I GCAGC 1 cut(s) 499
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 276, 475
Cac8I GCNNGC 4 cut(s) 34, 299, 485, 580
CaiI CAGNNNCTG 1 cut(s) 323
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 320, 460, 595
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 1 cut(s) 293
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 4 cut(s) 48, 338, 479, 626
DpnI GATC 2 cut(s) 282, 694
DpnII GATC 2 cut(s) 280, 692
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 320, 595
Eco47III AGCGCT 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 96, 552
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 4 cut(s) 316, 379, 602, 631
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 1 cut(s) 296
FaiI YATR 8 cut(s) 84, 148, 198, 219, 294, 359, 395, 543
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 476
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 30, 488
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 30, 488
FspBI CTAG 1 cut(s) 608
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 30, 488
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 1 cut(s) 461
HapII CCGG 4 cut(s) 33, 68, 254, 410
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 5 cut(s) 223, 305, 350, 399, 622
HpaII CCGG 4 cut(s) 33, 68, 254, 410
Hpy166II GTNNAC 3 cut(s) 25, 443, 595
Hpy188I TCNGA 2 cut(s) 192, 404
Hpy188III TCNNGA 5 cut(s) 410, 517, 619, 665, 680
Hpy8I GTNNAC 3 cut(s) 25, 443, 595
HpyAV CCTTC 3 cut(s) 323, 576, 683
HpyCH4III ACNGT 3 cut(s) 416, 589, 655
HpyCH4V TGCA 6 cut(s) 128, 455, 473, 504, 578, 641
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 101, 110, 164
HpyF3I CTNAG 4 cut(s) 48, 338, 479, 626
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 409
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 280, 692
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 2 cut(s) 154, 513
MaeI CTAG 1 cut(s) 608
MaeIII GTNAC 3 cut(s) 274, 325, 416
MalI GATC 2 cut(s) 282, 694
MbiI CCGCTC 1 cut(s) 483
MboI GATC 2 cut(s) 280, 692
MboII GAAGA 3 cut(s) 659, 695, 698
MluCI AATT 1 cut(s) 234
MlyI GAGTC 4 cut(s) 232, 314, 359, 408
MnlI CCTC 7 cut(s) 82, 85, 193, 237, 300, 338, 533
MreI CGCCGGCG 1 cut(s) 32
MroI TCCGGA 1 cut(s) 409
MroNI GCCGGC 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 3 cut(s) 108, 204, 703
MspI CCGG 4 cut(s) 33, 68, 254, 410
MspR9I CCNGG 4 cut(s) 318, 381, 604, 633
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 4 cut(s) 318, 381, 604, 633
MwoI GCNNNNNNNGC 4 cut(s) 77, 101, 110, 164
NaeI GCCGGC 1 cut(s) 34
NdeII GATC 2 cut(s) 280, 692
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 673
PdiI GCCGGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 2 cut(s) 31, 489
PleI GAGTC 4 cut(s) 231, 313, 358, 407
PpsI GAGTC 4 cut(s) 231, 313, 358, 407
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 4 cut(s) 316, 379, 602, 631
PspGI CCWGG 4 cut(s) 316, 379, 602, 631
PspPI GGNCC 3 cut(s) 320, 460, 595
PspPPI RGGWCCY 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 108, 204, 703
SatI GCNGC 2 cut(s) 30, 488
Sau3AI GATC 2 cut(s) 280, 692
Sau96I GGNCC 3 cut(s) 320, 460, 595
SchI GAGTC 4 cut(s) 232, 314, 359, 408
ScrFI CCNGG 4 cut(s) 318, 381, 604, 633
SfaNI GCATC 2 cut(s) 154, 513
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 2 cut(s) 320, 595
SmlI CTYRAG 2 cut(s) 302, 362
SmoI CTYRAG 2 cut(s) 302, 362
Sse9I AATT 1 cut(s) 234
SsiI CCGC 2 cut(s) 30, 483
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 4 cut(s) 316, 379, 602, 631
TaaI ACNGT 3 cut(s) 416, 589, 655
TaqI TCGA 2 cut(s) 353, 516
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 3 cut(s) 108, 204, 703
Tru9I TTAA 3 cut(s) 108, 204, 703
TscAI CASTG 2 cut(s) 283, 475
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 162, 176, 412
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 283, 475
VpaK11BI GGWCC 2 cut(s) 320, 595
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.