Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Reverse (-)

24488289 .. 24489836

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTTCACAGTGGACAATACCAAAACTTGTCACTTGGAGAGTCAGAGATTGGGCTTCTTGTTTCTTGGCTTGCAAGATTCCTCTAGACGGAGATGAAGATGGAGCTAATAATAATGGAAACACTACGAACAACAATAATCTAACGTTCAAAAGGATTAAGAGGAAGATTAAAAGTACTAAGAAGAAGAGATCAGAGAGGAAACTCAGCCTAAGCCCACCAGGTACACGTCATCATCATCTTCATCTAAGAAGCAGTAGCGTTTCTCCGACGACGTCGGGGTCTCAGCACCGGCGCTTGAGCTGGCCTCAGCCCCCTGTCTCAGAAGAATCTGGATTCATTGTCTTCTGCTTCGATCGCGAAGATGGTGGTTTCGATGTGGTTAAAGAGGGTAAACAAGAGAAGAAAGAGACGGAATCGTCCTCGGAAAAGTCACCGAGGACGGTGAATCGTAAGCTTATATATGGAGACCAAGGAGTAGGAGGAACAGAGAAGAATAACTCGCCGGAGACTAAAGGGACAGAACAAGATCAGAACGATAACACTTCATGTCAAGGAACTAAAGATGTCTCTAGTGATGTTACAGAAAGAACCAAAGAAGAAGAAGACATTGATGCCTCTGATAAATCTAGCGGGTCTAGTCACTCAGATGAAGGAAGGGGATCTTTTGCATTTCCCATATTAGGAGTAGAGTGGATGGGGAGTCCTGCTAAGATGCCTGAATCAGATGACTTGTCTCCCAAGAAACAAAAGCCAGTTGCTTTAGGGTTCCAATGTTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.12

Weight (kDa)

8.46

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	280, 418
AatII	GACGTC	1 cut(s)	278
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	633
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	1 cut(s)	670
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	178, 226
AfiI	CCNNNNNNNGG	2 cut(s)	89, 683
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	107, 303, 457
AluI	AGCT	3 cut(s)	107, 303, 457
Alw26I	GTCTC	7 cut(s)	288, 325, 404, 462, 503, 574, 741
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	426, 457
BbsI	GAAGAC	2 cut(s)	337, 612
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	95, 359, 691
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	7 cut(s)	288, 325, 404, 462, 503, 574, 741
BfaI	CTAG	4 cut(s)	86, 573, 630, 639
BfoI	RGCGCY	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	604, 705
BpiI	GAAGAC	2 cut(s)	337, 612
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
Bpu10I	CCTNAGC	2 cut(s)	212, 309
BpuEI	CTTGAG	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	288, 462
BsaJI	CCNNGG	3 cut(s)	423, 437, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 683
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	423, 437, 472
BseGI	GGATG	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	89, 683
BseMII	CTCAG	5 cut(s)	220, 299, 323, 336, 660
BseNI	ACTGG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	292, 506
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	89, 683
BsmAI	GTCTC	7 cut(s)	288, 325, 404, 462, 503, 574, 741
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	2 cut(s)	288, 462
Bsp143I	GATC	4 cut(s)	191, 355, 529, 662
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	5 cut(s)	219, 298, 322, 335, 659
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	770
BspPI	GGATC	1 cut(s)	670
BspTNI	GGTCTC	2 cut(s)	288, 462
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	755
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	423, 437, 472
BssMI	GATC	4 cut(s)	191, 355, 529, 662
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	12, 445
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	73, 305
BstDEI	CTNAG	9 cut(s)	180, 206, 212, 248, 285, 309, 322, 646, 711
BstF5I	GGATG	1 cut(s)	702
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	4 cut(s)	194, 358, 532, 665
BstMAI	GTCTC	7 cut(s)	288, 325, 404, 462, 503, 574, 741
BstMBI	GATC	4 cut(s)	191, 355, 529, 662
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	360
BstV2I	GAAGAC	2 cut(s)	337, 612
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	17
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	73, 305
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	291
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	177, 225
CviAII	CATG	1 cut(s)	549
CviQI	GTAC	2 cut(s)	177, 225
DdeI	CTNAG	9 cut(s)	180, 206, 212, 248, 285, 309, 322, 646, 711
DpnI	GATC	4 cut(s)	193, 357, 531, 664
DpnII	GATC	4 cut(s)	191, 355, 529, 662
DrdI	GACNNNNNNGTC	2 cut(s)	280, 418
DseDI	GACNNNNNNGTC	2 cut(s)	280, 418
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	472
Eco31I	GGTCTC	2 cut(s)	288, 462
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	1 cut(s)	552
FaiI	YATR	5 cut(s)	461, 463, 465, 550, 680
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	1 cut(s)	548
FauI	CCCGC	1 cut(s)	626
FokI	GGATG	1 cut(s)	709
FspBI	CTAG	4 cut(s)	86, 573, 630, 639
GlaI	GCGC	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	2 cut(s)	292, 506
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	9 cut(s)	42, 79, 329, 336, 416, 448, 703, 722, 783
HpaII	CCGG	2 cut(s)	292, 506
HphI	GGTGA	2 cut(s)	426, 457
Hpy166II	GTNNAC	3 cut(s)	15, 227, 395
Hpy188III	TCNNGA	3 cut(s)	86, 333, 359
Hpy8I	GTNNAC	3 cut(s)	15, 227, 395
Hpy99I	CGWCG	3 cut(s)	274, 277, 280
HpyAV	CCTTC	2 cut(s)	647, 651
HpyCH4III	ACNGT	2 cut(s)	12, 445
HpyCH4IV	ACGT	3 cut(s)	146, 229, 275
HpyCH4V	TGCA	2 cut(s)	75, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	9 cut(s)	180, 206, 212, 248, 285, 309, 322, 646, 711
HpySE526I	ACGT	3 cut(s)	146, 229, 275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	552
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	191, 355, 529, 662
LmnI	GCTCC	1 cut(s)	104
LweI	GCATC	2 cut(s)	604, 705
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	4 cut(s)	86, 573, 630, 639
MaeII	ACGT	3 cut(s)	146, 229, 275
MaeIII	GTNAC	4 cut(s)	31, 432, 580, 641
MalI	GATC	4 cut(s)	193, 357, 531, 664
MboI	GATC	4 cut(s)	191, 355, 529, 662
MflI	RGATCY	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	51, 712
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	93, 156, 192, 318, 382, 432, 433, 476, 628
MseI	TTAA	3 cut(s)	159, 171, 384
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	2 cut(s)	292, 506
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	4 cut(s)	191, 355, 529, 662
NlaIII	CATG	1 cut(s)	552
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	3 cut(s)	31, 432, 641
NruI	TCGCGA	1 cut(s)	360
PfeI	GAWTC	7 cut(s)	79, 329, 336, 416, 448, 722, 783
PflFI	GACNNNGTC	1 cut(s)	274
Ple19I	CGATCG	1 cut(s)	358
PleI	GAGTC	2 cut(s)	50, 711
PpsI	GAGTC	2 cut(s)	50, 711
Psp1406I	AACGTT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	662
PsyI	GACNNNGTC	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	358
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	2 cut(s)	178, 226
RsaNI	GTAC	2 cut(s)	177, 225
RseI	CAYNNNNRTG	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	159, 171, 384
Sau3AI	GATC	4 cut(s)	191, 355, 529, 662
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	2 cut(s)	51, 712
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	7 cut(s)	109, 149, 226, 232, 278, 305, 459
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	604, 705
SgrAI	CRCCGGYG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SsiI	CCGC	1 cut(s)	633
SspMI	CTAG	4 cut(s)	86, 573, 630, 639
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	2 cut(s)	12, 445
TaiI	ACGT	3 cut(s)	149, 232, 278
TaqI	TCGA	2 cut(s)	354, 375
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	7 cut(s)	79, 329, 336, 416, 448, 722, 783
Tru1I	TTAA	3 cut(s)	159, 171, 384
Tru9I	TTAA	3 cut(s)	159, 171, 384
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	3 cut(s)	31, 432, 641
Tsp45I	GTSAC	3 cut(s)	31, 432, 641
TspDTI	ATGAA	5 cut(s)	111, 233, 328, 537, 666
TspGWI	ACGGA	2 cut(s)	105, 428
TspRI	CASTG	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	85
XspI	CTAG	4 cut(s)	86, 573, 630, 639
ZraI	GACGTC	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.