Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Reverse (-)

62896241 .. 62897923

Gene Structure 1683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTGCACTCCATGGACTATAACAAAGCTAGTGAAGAAGGACTGTGCTTCATGCTTCTTGGCTTGCAGGTTTCCTCTAGATGATGAAGCAGTTGATGATCGTAGACGTTATGCTACAACAACTCCTCAGTTGCCAATGAGAAACATGATGGCTTTCGATTATCAGCGCGACTTCGGAGAGAATGAGAGAGTTAGGAACAAGAACATGTCCCCCTCACGCCACAAGAATTCGAACCTATCAGCTCGAAGACGACTGAGACATGATCCCAAACAGGTTAAACAGATTACTAGTACTAGTAGAATTAGTAGTACTGCTTCCAGGCCAGTTCGATATCAGAGTAGTGATGAAGAATCAAGCTGCAGACATCTGCCACATTTCGCAGACGAAGATCAAGACTACATAGTATTCTGCTTCAAAGAAGATGGAGCATTCGAAGTAGAGAAAAATGTCAAACCAGAAGGACAGAATTGCAGGGACAGCACCTCATCAAAAAACTCGAGGCAGGTCAATCGGAAGAATGAAGGTAGAGACGGAAAGAACATATGGTCGGATACAAAAGCAACTACTGCTGCTGGTAGCATGGGTGAGGTCTCTATTGAATCAAGTGACTCTAATCAATCGGACCACAGCACAGGCTCTTTCGCATTCCCTGTGTATGTTGGCTGTGGAATGGCCGGGGAGTCCTGTGCGATTGCCAAAACCAGAAGAGCTGGACTTGAGAGAGCACAAGGCTCGGTGTATAGGCCTTCAGTTCCAGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.59

Weight (kDa)

8.95

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	57, 493
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	2 cut(s)	292, 310
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	415, 599
AhlI	ACTAGT	2 cut(s)	287, 293
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	28, 242, 357, 710
AluI	AGCT	4 cut(s)	28, 242, 357, 710
Alw21I	GWGCWC	2 cut(s)	8, 727
Alw26I	GTCTC	3 cut(s)	250, 522, 595
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	320, 672, 743
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	357, 569
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	2 cut(s)	230, 432
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	8, 727
BbvI	GCAGC	2 cut(s)	344, 556
BccI	CCATC	2 cut(s)	142, 416
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 714, 748
BciT130I	CCWGG	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	250, 522, 595
BcuI	ACTAGT	2 cut(s)	287, 293
BfaI	CTAG	4 cut(s)	29, 77, 288, 294
BfmI	CTRYAG	1 cut(s)	358
BfuAI	ACCTGC	2 cut(s)	57, 493
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	358, 570
BlsI	GCNGC	2 cut(s)	359, 571
BmcAI	AGTACT	2 cut(s)	292, 310
Bme1390I	CCNGG	2 cut(s)	319, 676
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	622
BmrFI	CCNGG	2 cut(s)	319, 676
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	2 cut(s)	230, 432
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	11, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse1I	ACTGG	2 cut(s)	323, 755
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	11, 675
BseMII	CTCAG	2 cut(s)	140, 245
BseNI	ACTGG	2 cut(s)	323, 755
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	344, 556
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	322, 674, 745
BsiHKAI	GWGCWC	2 cut(s)	8, 727
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	193, 488
BsmAI	GTCTC	3 cut(s)	250, 522, 595
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	193, 488
BsmI	GAATGC	2 cut(s)	428, 644
BsnI	GGCC	3 cut(s)	322, 674, 745
Bso31I	GGTCTC	1 cut(s)	595
BsoBI	CYCGRG	1 cut(s)	496
Bsp119I	TTCGAA	2 cut(s)	230, 432
Bsp1286I	GDGCHC	2 cut(s)	8, 727
Bsp143I	GATC	3 cut(s)	97, 262, 388
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	3 cut(s)	322, 674, 745
BspCNI	CTCAG	2 cut(s)	139, 246
BspFNI	CGCG	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	2 cut(s)	57, 493
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	700
BspT104I	TTCGAA	2 cut(s)	230, 432
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	323, 755
BssECI	CCNNGG	2 cut(s)	11, 675
BssMI	GATC	3 cut(s)	97, 262, 388
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	700
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBI	TTCGAA	2 cut(s)	230, 432
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	126, 254
BstDSI	CCRYGG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	100, 265, 391
BstMAI	GTCTC	3 cut(s)	250, 522, 595
BstMBI	GATC	3 cut(s)	97, 262, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 566
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	317, 674
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	344, 556
BstV2I	GAAGAC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	322, 674, 745
BtgI	CCRYGG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	2 cut(s)	57, 493
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	2 cut(s)	291, 309
CviAII	CATG	6 cut(s)	12, 51, 145, 205, 260, 580
CviQI	GTAC	2 cut(s)	291, 309
DdeI	CTNAG	2 cut(s)	126, 254
DpnI	GATC	3 cut(s)	99, 264, 390
DpnII	GATC	3 cut(s)	97, 262, 388
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	745
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
FaqI	GGGAC	2 cut(s)	193, 488
FatI	CATG	6 cut(s)	11, 50, 144, 204, 259, 579
FauNDI	CATATG	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	358, 570
Fsp4HI	GCNGC	2 cut(s)	358, 570
FspBI	CTAG	4 cut(s)	29, 77, 288, 294
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	358, 570
HaeIII	GGCC	3 cut(s)	322, 674, 745
HapII	CCGG	1 cut(s)	675
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	350, 599, 608, 680
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	6, 104
Hpy188I	TCNGA	5 cut(s)	176, 336, 513, 550, 622
Hpy188III	TCNNGA	2 cut(s)	77, 392
Hpy8I	GTNNAC	2 cut(s)	6, 104
HpyAV	CCTTC	4 cut(s)	31, 452, 515, 756
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	6, 66, 360, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 566
HpyF3I	CTNAG	2 cut(s)	126, 254
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	97, 262, 388
LguI	GCTCTTC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	2 cut(s)	344, 556
MaeI	CTAG	4 cut(s)	29, 77, 288, 294
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	3 cut(s)	99, 264, 390
MboI	GATC	3 cut(s)	97, 262, 388
MboII	GAAGA	7 cut(s)	46, 258, 359, 398, 431, 526, 717
MhlI	GDGCHC	2 cut(s)	8, 727
MluCI	AATT	3 cut(s)	226, 300, 466
MlyI	GAGTC	2 cut(s)	602, 689
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	6 cut(s)	84, 135, 223, 492, 493, 580
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	2 cut(s)	319, 676
Mva1269I	GAATGC	2 cut(s)	428, 644
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	477, 566
NciI	CCSGG	1 cut(s)	676
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	3 cut(s)	97, 262, 388
NlaIII	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	2 cut(s)	230, 432
PaeR7I	CTCGAG	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	745
PciI	ACATGT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	700
PctI	GAATGC	2 cut(s)	428, 644
PfeI	GAWTC	2 cut(s)	350, 599
PkrI	GCNGC	2 cut(s)	359, 571
PleI	GAGTC	2 cut(s)	602, 688
PpsI	GAGTC	2 cut(s)	602, 688
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	622
PspXI	VCTCGAGB	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	292, 310
RsaNI	GTAC	2 cut(s)	291, 309
SapI	GCTCTTC	1 cut(s)	700
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	358, 570
Sau3AI	GATC	3 cut(s)	97, 262, 388
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	2 cut(s)	292, 310
SchI	GAGTC	2 cut(s)	602, 689
ScrFI	CCNGG	2 cut(s)	319, 676
SduI	GDGCHC	2 cut(s)	8, 727
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	496
SfuI	TTCGAA	2 cut(s)	230, 432
SinI	GGWCC	1 cut(s)	622
SlaI	CTCGAG	1 cut(s)	496
SmlI	CTYRAG	2 cut(s)	496, 716
SmoI	CTYRAG	2 cut(s)	496, 716
SpeI	ACTAGT	2 cut(s)	287, 293
Sse9I	AATT	3 cut(s)	226, 300, 466
SseBI	AGGCCT	1 cut(s)	745
SspMI	CTAG	4 cut(s)	29, 77, 288, 294
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	2 cut(s)	317, 674
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	6 cut(s)	156, 230, 244, 328, 432, 497
TasI	AATT	3 cut(s)	226, 300, 466
TatI	WGTACW	2 cut(s)	290, 308
TfiI	GAWTC	2 cut(s)	350, 599
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	357, 569
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	39, 99, 360, 534
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	762
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	4 cut(s)	29, 77, 288, 294
ZrmI	AGTACT	2 cut(s)	292, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.