Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

58638952 .. 58642158

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0459600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGTTGAGCTGGTTTTGTACAATTTTTAGCGAGCAGGTTTGTTCTGTTAAGGCTGGAGGAATGATGTCCCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCGGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACACGGTTGTGAAGGTAGCATGTGGAAATGAGCATGTAGTAGCCCTAGTCACGGCTGGAGAAACGTATAAAGGTGAGGATCTTTTATGCTTCTCTTGGGGTAGTAACAATCATGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAATCGTCCTGAAATAGTAGAAGATTTTAACGAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACAGCTTTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAACGCATGTGCTGGACGTTTGGCCTTGGAGAAAATGGGCAACTTGGGCATGGAACCACTCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTGTTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAAATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATATCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTGTTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATAGTGTTGGGGAAGAGAATTCTGAAGGAGTCACCAAAACAGAAAAAGCCTTGTCTTCAGCAATTGAAGAAACGAAACTTCTTCAATCAAAACTCGCTGTGATGGAACGATATGCTGGCGTACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCGATCTCCTTGCAGAACTCAAGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATAAAAAAAAGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGATAGTAAAAGAGTGTCTCAGTTCTACTATAAACAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

436

Amino Acids

47.6

Weight (kDa)

5.27

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	11 - 301	9.1e-45	RCC1-like domain
RCC1_2	PF13540	68 - 105	1.1e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	95 - 144	1.3e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	158 - 204	3e-09	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	159
AciI	CCGC	2 cut(s)	159, 389
AclWI	GGATC	4 cut(s)	282, 732, 745, 1175
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	961
AcuI	CTGAAG	2 cut(s)	984, 987
AfaI	GTAC	3 cut(s)	19, 91, 1065
AfiI	CCNNNNNNNGG	3 cut(s)	180, 181, 247
AgsI	TTSAA	6 cut(s)	928, 1010, 1028, 1077, 1229, 1252
AhlI	ACTAGT	1 cut(s)	605
AleI	CACNNNNGTG	3 cut(s)	203, 606, 896
AluBI	AGCT	6 cut(s)	9, 425, 823, 1192, 1225, 1246
AluI	AGCT	6 cut(s)	9, 425, 823, 1192, 1225, 1246
Alw26I	GTCTC	3 cut(s)	449, 662, 1289
AlwI	GGATC	4 cut(s)	282, 732, 745, 1175
AlwNI	CAGNNNCTG	2 cut(s)	727, 1184
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	4 cut(s)	193, 319, 484, 905
ApeKI	GCWGC	3 cut(s)	126, 129, 785
ApoI	RAATTY	1 cut(s)	961
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	281, 967
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	766
BalI	TGGCCA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	990
BbvI	GCAGC	3 cut(s)	138, 141, 772
BccI	CCATC	3 cut(s)	640, 806, 1039
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	4 cut(s)	856, 890, 1102, 1136
BcoDI	GTCTC	3 cut(s)	449, 662, 1289
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	6 cut(s)	71, 119, 242, 606, 678, 1169
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	3 cut(s)	127, 130, 786
BlsI	GCNGC	3 cut(s)	128, 131, 787
Bme18I	GGWCC	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	4 cut(s)	91, 517, 739, 762
BmrI	ACTGGG	2 cut(s)	170, 696
BmsI	GCATC	2 cut(s)	685, 694
BmuI	ACTGGG	2 cut(s)	170, 696
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	2 cut(s)	75, 273
BpuEI	CTTGAG	1 cut(s)	1114
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	190, 322, 487, 1092
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 181, 247
Bse118I	RCCGGY	1 cut(s)	763
Bse1I	ACTGG	2 cut(s)	176, 691
BseDI	CCNNGG	4 cut(s)	190, 322, 487, 1092
BseGI	GGATG	3 cut(s)	105, 651, 709
BseLI	CCNNNNNNNGG	3 cut(s)	180, 181, 247
BseMII	CTCAG	1 cut(s)	1300
BseNI	ACTGG	2 cut(s)	176, 691
BseXI	GCAGC	3 cut(s)	138, 141, 772
BshFI	GGCC	4 cut(s)	195, 321, 486, 907
BshNI	GGYRCC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	340, 764
BslFI	GGGAC	3 cut(s)	52, 703, 1172
BslI	CCNNNNNNNGG	3 cut(s)	180, 181, 247
BsmAI	GTCTC	3 cut(s)	449, 662, 1289
BsmFI	GGGAC	3 cut(s)	52, 703, 1172
BsmI	GAATGC	1 cut(s)	1170
BsnI	GGCC	4 cut(s)	195, 321, 486, 907
Bso31I	GGTCTC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	274, 576, 737, 1113, 1180
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	2 cut(s)	159, 389
BspANI	GGCC	4 cut(s)	195, 321, 486, 907
BspCNI	CTCAG	1 cut(s)	1299
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	4 cut(s)	91, 517, 739, 762
BspMAI	CTGCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	4 cut(s)	282, 732, 745, 1175
BspQI	GCTCTTC	1 cut(s)	1092
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	763
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	176, 691
BssAI	RCCGGY	1 cut(s)	763
BssECI	CCNNGG	4 cut(s)	190, 322, 487, 1092
BssMI	GATC	5 cut(s)	274, 576, 737, 1113, 1180
BssT1I	CCWWGG	3 cut(s)	190, 487, 1092
Bst4CI	ACNGT	6 cut(s)	202, 547, 590, 796, 881, 895
Bst6I	CTCTTC	2 cut(s)	951, 1092
BstAPI	GCANNNNNTGC	2 cut(s)	704, 1184
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	32, 1060
BstDEI	CTNAG	1 cut(s)	1286
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	105, 651, 709
BstKTI	GATC	5 cut(s)	277, 579, 740, 1116, 1183
BstMAI	GTCTC	3 cut(s)	449, 662, 1289
BstMBI	GATC	5 cut(s)	274, 576, 737, 1113, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 508, 704, 1184
BstNSI	RCATGY	4 cut(s)	219, 233, 408, 472
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	3 cut(s)	138, 141, 772
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	3 cut(s)	274, 737, 1180
BstYI	RGATCY	3 cut(s)	274, 737, 1180
BsuRI	GGCC	4 cut(s)	195, 321, 486, 907
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	105, 651, 709
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 183, 891
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	32, 1060
CaiI	CAGNNNCTG	2 cut(s)	727, 1184
CciI	TCATGA	1 cut(s)	1138
Cfr10I	RCCGGY	1 cut(s)	763
Cfr13I	GGNCC	1 cut(s)	766
Csp6I	GTAC	3 cut(s)	18, 90, 1064
CviQI	GTAC	3 cut(s)	18, 90, 1064
DdeI	CTNAG	1 cut(s)	1286
DpnI	GATC	5 cut(s)	276, 578, 739, 1115, 1182
DpnII	GATC	5 cut(s)	274, 576, 737, 1113, 1180
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	951, 1092
EarI	CTCTTC	2 cut(s)	951, 1092
Eco130I	CCWWGG	3 cut(s)	190, 487, 1092
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	984, 987
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	961
EcoT14I	CCWWGG	3 cut(s)	190, 487, 1092
ErhI	CCWWGG	3 cut(s)	190, 487, 1092
FaqI	GGGAC	3 cut(s)	52, 703, 1172
Fnu4HI	GCNGC	3 cut(s)	127, 130, 786
FokI	GGATG	3 cut(s)	112, 658, 716
Fsp4HI	GCNGC	3 cut(s)	127, 130, 786
FspBI	CTAG	6 cut(s)	71, 119, 242, 606, 678, 1169
GluI	GCNGC	3 cut(s)	127, 130, 786
GsuI	CTGGAG	2 cut(s)	75, 273
HaeIII	GGCC	4 cut(s)	195, 321, 486, 907
HapII	CCGG	2 cut(s)	340, 764
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	2 cut(s)	821, 1223
HinfI	GANTC	6 cut(s)	343, 377, 724, 972, 1172, 1261
HpaII	CCGG	2 cut(s)	340, 764
HphI	GGTGA	2 cut(s)	281, 967
Hpy166II	GTNNAC	2 cut(s)	116, 586
Hpy188I	TCNGA	4 cut(s)	576, 860, 967, 1113
Hpy188III	TCNNGA	5 cut(s)	350, 539, 758, 1139, 1265
Hpy8I	GTNNAC	2 cut(s)	116, 586
HpyAV	CCTTC	5 cut(s)	131, 202, 646, 962, 1223
HpyCH4III	ACNGT	6 cut(s)	202, 547, 590, 796, 881, 895
HpyCH4IV	ACGT	2 cut(s)	260, 479
HpyCH4V	TGCA	3 cut(s)	623, 698, 1123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 508, 704, 1184
HpyF3I	CTNAG	1 cut(s)	1286
HpySE526I	ACGT	2 cut(s)	260, 479
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	274, 576, 737, 1113, 1180
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	3 cut(s)	138, 141, 772
LweI	GCATC	2 cut(s)	685, 694
MaeI	CTAG	6 cut(s)	71, 119, 242, 606, 678, 1169
MaeII	ACGT	2 cut(s)	260, 479
MaeIII	GTNAC	4 cut(s)	244, 299, 731, 973
MalI	GATC	5 cut(s)	276, 578, 739, 1115, 1182
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	5 cut(s)	274, 576, 737, 1113, 1180
MboII	GAAGA	9 cut(s)	374, 855, 947, 968, 990, 1016, 1022, 1109, 1264
MfeI	CAATTG	2 cut(s)	109, 1005
MflI	RGATCY	3 cut(s)	274, 737, 1180
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	21, 109, 554, 961, 1005
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	371, 981, 1181
MmeI	TCCRAC	2 cut(s)	194, 1182
MnlI	CCTC	8 cut(s)	50, 265, 332, 367, 541, 833, 913, 918
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	3 cut(s)	48, 369, 1236
MslI	CAYNNNNRTG	3 cut(s)	203, 606, 896
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	2 cut(s)	340, 764
MunI	CAATTG	2 cut(s)	109, 1005
Mva1269I	GAATGC	1 cut(s)	1170
MwoI	GCNNNNNNNGC	4 cut(s)	410, 508, 704, 1184
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	5 cut(s)	274, 576, 737, 1113, 1180
NlaIV	GGNNCC	4 cut(s)	91, 517, 739, 762
NmuCI	GTSAC	2 cut(s)	244, 973
NspI	RCATGY	4 cut(s)	219, 233, 408, 472
OliI	CACNNNNGTG	3 cut(s)	203, 606, 896
PagI	TCATGA	1 cut(s)	1138
PceI	AGGCCT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	1092
PctI	GAATGC	1 cut(s)	1170
PfeI	GAWTC	3 cut(s)	343, 724, 1261
PkrI	GCNGC	3 cut(s)	128, 131, 787
PleI	GAGTC	3 cut(s)	371, 980, 1180
PpsI	GAGTC	3 cut(s)	371, 980, 1180
PspN4I	GGNNCC	4 cut(s)	91, 517, 739, 762
PspPI	GGNCC	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	2 cut(s)	727, 1184
PsuI	RGATCY	3 cut(s)	274, 737, 1180
RsaI	GTAC	3 cut(s)	19, 91, 1065
RsaNI	GTAC	3 cut(s)	18, 90, 1064
RseI	CAYNNNNRTG	3 cut(s)	203, 606, 896
SapI	GCTCTTC	1 cut(s)	1092
SaqAI	TTAA	3 cut(s)	48, 369, 1236
SatI	GCNGC	3 cut(s)	127, 130, 786
Sau3AI	GATC	5 cut(s)	274, 576, 737, 1113, 1180
Sau96I	GGNCC	1 cut(s)	766
SchI	GAGTC	3 cut(s)	371, 981, 1181
SfaNI	GCATC	2 cut(s)	685, 694
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	766
SmiMI	CAYNNNNRTG	3 cut(s)	203, 606, 896
SmlI	CTYRAG	1 cut(s)	1129
SmoI	CTYRAG	1 cut(s)	1129
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	5 cut(s)	21, 109, 554, 961, 1005
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	2 cut(s)	159, 389
SspI	AATATT	1 cut(s)	1080
SspMI	CTAG	6 cut(s)	71, 119, 242, 606, 678, 1169
StuI	AGGCCT	1 cut(s)	321
StyI	CCWWGG	3 cut(s)	190, 487, 1092
TaaI	ACNGT	6 cut(s)	202, 547, 590, 796, 881, 895
TaiI	ACGT	2 cut(s)	263, 482
TaqI	TCGA	1 cut(s)	876
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	5 cut(s)	21, 109, 554, 961, 1005
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	343, 724, 1261
Tru1I	TTAA	3 cut(s)	48, 369, 1236
Tru9I	TTAA	3 cut(s)	48, 369, 1236
TscAI	CASTG	3 cut(s)	139, 183, 898
TseFI	GTSAC	2 cut(s)	244, 973
TseI	GCWGC	3 cut(s)	126, 129, 785
Tsp45I	GTSAC	2 cut(s)	244, 973
TspDTI	ATGAA	4 cut(s)	411, 606, 1058, 1127
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	3 cut(s)	139, 183, 898
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	4 cut(s)	219, 233, 408, 472
XcmI	CCANNNNNNNNNTGG	2 cut(s)	177, 776
XspI	CTAG	6 cut(s)	71, 119, 242, 606, 678, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.