Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

26975378 .. 26984179

Gene Structure 8802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTTCCCCCTTCATTATATGGTCATTTCAGGGACTTGACTGACCACCACCACCACCTGACTTTGTCCTCCTCCGCCGCCAACGGCAACATCGACCGCGTCCTCTTCCAAGAGCTCATCGAGATCATCCCTCTTGTCCAGTCCCTCGTCGATCCGGAAGCCAGCAGTTCATTTACGCGGCGCGGTTCAGTCACCTACAGCAAGACACCTTCGAGAGACTCCTTATCCAACAAAAAAGAACAGTCTATAGTCAGTAGCAGAAAGAATGTGTGCAACACTTGGAACTGCAACTTGCCGTTGAGACTTGGACGTGGTCATAAATCAAGGAACTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

9.44

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 178, 183
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	5 cut(s)	75, 78, 97, 178, 183
AclWI	GGATC	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	311
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	210, 295
AlwI	GGATC	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BceAI	ACGGC	2 cut(s)	100, 280
BcoDI	GTCTC	2 cut(s)	210, 295
BfaI	CTAG	1 cut(s)	337
BfmI	CTRYAG	2 cut(s)	196, 246
BisI	GCNGC	2 cut(s)	78, 179
BlsI	GCNGC	2 cut(s)	79, 180
BmgBI	CACGTC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	154
BseGI	GGATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	61
Bsh1236I	CGCG	3 cut(s)	99, 178, 183
Bsh1285I	CGRYCG	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	47, 127
BsmAI	GTCTC	2 cut(s)	210, 295
BsmFI	GGGAC	2 cut(s)	47, 127
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	123, 151
BspACI	CCGC	5 cut(s)	75, 78, 97, 178, 183
BspEI	TCCGGA	1 cut(s)	154
BspFNI	CGCG	3 cut(s)	99, 178, 183
BspPI	GGATC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	123, 151
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	3 cut(s)	99, 178, 183
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	126, 154
BstMAI	GTCTC	2 cut(s)	210, 295
BstMBI	GATC	2 cut(s)	123, 151
BstMCI	CGRYCG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	196, 246
BstUI	CGCG	3 cut(s)	99, 178, 183
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	1 cut(s)	88
CviJI	RGCY	2 cut(s)	115, 161
CviKI_1	RGCY	2 cut(s)	115, 161
DpnI	GATC	2 cut(s)	125, 153
DpnII	GATC	2 cut(s)	123, 151
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	117
FaiI	YATR	4 cut(s)	19, 21, 248, 318
FaqI	GGGAC	2 cut(s)	47, 127
Fnu4HI	GCNGC	2 cut(s)	78, 179
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	78, 179
FspBI	CTAG	1 cut(s)	337
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	78, 179
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	121, 155, 213
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	21, 219
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	273, 288
HpySE526I	ACGT	1 cut(s)	310
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	123, 151
LpnPI	CCDG	5 cut(s)	16, 71, 152, 168, 175
MaeI	CTAG	1 cut(s)	337
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	125, 153
MboI	GATC	2 cut(s)	123, 151
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	79, 82, 113, 141, 155
MroI	TCCGGA	1 cut(s)	154
MspI	CCGG	1 cut(s)	155
MvnI	CGCG	3 cut(s)	99, 178, 183
NdeII	GATC	2 cut(s)	123, 151
NmuCI	GTSAC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PflFI	GACNNNGTC	3 cut(s)	64, 98, 312
PkrI	GCNGC	2 cut(s)	79, 180
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	64, 98, 312
SacI	GAGCTC	1 cut(s)	117
SatI	GCNGC	2 cut(s)	78, 179
Sau3AI	GATC	2 cut(s)	123, 151
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	60, 117, 197, 211, 313
SfcI	CTRYAG	2 cut(s)	196, 246
SsiI	CCGC	5 cut(s)	75, 78, 97, 178, 183
SspMI	CTAG	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	4 cut(s)	93, 120, 150, 212
TauI	GCSGC	2 cut(s)	80, 181
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	159
Tth111I	GACNNNGTC	3 cut(s)	64, 98, 312
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.