Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

54696747 .. 54697162

Gene Structure 416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTACCCACCTCGTCCCCTCCCCCACGATCACCCATCGAAACTCTGCTATGCTTCCTCCTTCATTGAAAGTGGCATTAAATCCAGGTTGCTGCTGAATCCGGAATTGCAGACCCAACAACAATTGTATGGTCATTTCGGGGACTTGACTGACCACCACCACCACCTGACTTTGTCCTCCTCCGCCGCCAACGGTAACATCGACCGCGTCCTGTTCCAAGACCTCGTCGAGATCATCCCTCTTGTCCAGTCCCCCATTTACGCGGCGCGGTTCAGTCACCTACAGCAAGACACCTTCGAGAGACTCCTTATCCAAGAAAGTAAGATTGATTTTTTGTTTGTAACTTGTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

5.83

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	207, 263, 268
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	5 cut(s)	183, 186, 205, 263, 268
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	23, 269
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	295
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	3 cut(s)	92, 186, 264
BlsI	GCNGC	3 cut(s)	93, 187, 265
Bme1390I	CCNGG	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	3 cut(s)	207, 263, 268
Bsh1285I	CGRYCG	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	155, 235
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	155, 235
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	28, 231
BspACI	CCGC	5 cut(s)	183, 186, 205, 263, 268
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	3 cut(s)	207, 263, 268
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	28, 231
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	3 cut(s)	207, 263, 268
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	31, 234
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	28, 231
BstMCI	CGRYCG	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	3 cut(s)	207, 263, 268
BstV1I	GCAGC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	234
CfoI	GCGC	1 cut(s)	268
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	4
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	30, 233
DpnII	GATC	2 cut(s)	28, 231
EciI	GGCGGA	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	83
FaiI	YATR	2 cut(s)	51, 129
FaqI	GGGAC	2 cut(s)	155, 235
Fnu4HI	GCNGC	3 cut(s)	92, 186, 264
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	92, 186, 264
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	92, 186, 264
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	2 cut(s)	97, 303
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	23, 269
Hpy188III	TCNNGA	3 cut(s)	101, 229, 298
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	70, 304
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	109
HspAI	GCGC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	28, 231
LpnPI	CCDG	6 cut(s)	70, 97, 114, 179, 224, 260
Lsp1109I	GCAGC	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	194, 275, 340
MalI	GATC	2 cut(s)	30, 233
MboI	GATC	2 cut(s)	28, 231
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	3 cut(s)	104, 122, 350
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	21, 29, 67, 187, 190, 233, 249
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	3 cut(s)	207, 263, 268
NdeII	GATC	2 cut(s)	28, 231
NmuCI	GTSAC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	97
PflFI	GACNNNGTC	3 cut(s)	172, 206, 224
PkrI	GCNGC	3 cut(s)	93, 187, 265
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PsyI	GACNNNGTC	3 cut(s)	172, 206, 224
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	3 cut(s)	92, 186, 264
Sau3AI	GATC	2 cut(s)	28, 231
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	6 cut(s)	13, 89, 168, 225, 282, 296
SfcI	CTRYAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	104, 122, 350
SsiI	CCGC	5 cut(s)	183, 186, 205, 263, 268
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	38, 201, 228, 297
TasI	AATT	3 cut(s)	104, 122, 350
TauI	GCSGC	2 cut(s)	188, 266
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	52
Tth111I	GACNNNGTC	3 cut(s)	172, 206, 224
XapI	RAATTY	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.