Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

4042856 .. 4045079

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCAGCATTTCCTGGATTTGCAGGACAACCCGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCACCTGACTCAGTCCTCCTCCGCCGCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTTGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCACGCGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACTCCTTATCCAAAAAAGTGCCGAACAGGAATGGGGCTCAATCCATGCCGGCAAGAAAGAAGAGGGAGAGTGCTAGCAATAACCCGGATGCTGACAGCGTTTTAAGTTTTTCCTCAAGGGCTTCGGCGGCAGAAAAGGAGGACGAAGAGTTGGATGCGTTAAGGGTTCAGTTGGAGGATCTGCAGAGGAAATTGTTGGAGAAAGATGAACTTTTGAAGTCGTCGGAGATCTCAAAGAACGAAGTGAGTGCTGTTCAAGCAAAACTTGAGGAACTGAAGCGCCAAGCTGCGCAAAAGGATTCTGTAATCAAGGCATCTCAGCTACAACTATCTGATGCAAAGATCAAGCTTGCAGATAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGAGAAGCTCCAAGGAGAGCTAGACTCTTTGCGAGGAGACATTTCCACAATTATGATCCTATTCGAAGGCTTGGTGAAAACTGATTCTACTGCATCCGCTGAAGATTATGATATTTCACCTTGTACTGTGGATCATCTTCCATATATTGACGATTGGGATGAGTCGCAGATGCAGAGAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGCTGCAAAAGAAAGGCAAGATGAAGAATCTATTGCTGCTGCAGCCGATGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.75

Weight (kDa)

5.41

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	540
AccII	CGCG	3 cut(s)	132, 211, 216
AciI	CCGC	7 cut(s)	108, 111, 130, 214, 216, 377, 759
AclWI	GGATC	3 cut(s)	435, 712, 801
AcuI	CTGAAG	2 cut(s)	545, 783
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	787
AfiI	CCNNNNNNNGG	3 cut(s)	55, 220, 930
AgsI	TTSAA	4 cut(s)	466, 506, 944, 958
AjnI	CCWGG	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	75, 243, 693
AlwI	GGATC	3 cut(s)	435, 712, 801
AspLEI	GCGC	3 cut(s)	213, 531, 541
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	4 cut(s)	71, 217, 748, 771
AsuII	TTCGAA	1 cut(s)	726
AsuNHI	GCTAGC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	75, 243, 693
BfaI	CTAG	3 cut(s)	324, 683, 852
BfmI	CTRYAG	2 cut(s)	431, 918
BfoI	RGCGCY	1 cut(s)	532
BglII	AGATCT	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	14, 335
BmrFI	CCNGG	2 cut(s)	14, 335
BmsI	GCATC	7 cut(s)	328, 394, 572, 574, 764, 822, 916
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
Bpu14I	TTCGAA	1 cut(s)	726
BpuEI	CTTGAG	2 cut(s)	349, 536
BpuMI	CCSGG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	214, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 220, 930
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	214, 673
BseGI	GGATG	4 cut(s)	343, 409, 755, 826
BseLI	CCNNNNNNNGG	3 cut(s)	55, 220, 930
BseMII	CTCAG	2 cut(s)	110, 581
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	94, 711
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	3 cut(s)	132, 211, 216
Bsh1285I	CGRYCG	2 cut(s)	130, 187
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	2 cut(s)	130, 187
BsiSI	CCGG	2 cut(s)	299, 335
BslFI	GGGAC	2 cut(s)	146, 160
BslI	CCNNNNNNNGG	3 cut(s)	55, 220, 930
BsmAI	GTCTC	3 cut(s)	75, 243, 693
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	146, 160
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
BspACI	CCGC	7 cut(s)	108, 111, 130, 214, 216, 377, 759
BspCNI	CTCAG	2 cut(s)	109, 580
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	3 cut(s)	132, 211, 216
BspMAI	CTGCAG	2 cut(s)	435, 922
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	3 cut(s)	435, 712, 801
BspT104I	TTCGAA	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	214, 673
BssMI	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	633, 790
Bst6I	CTCTTC	3 cut(s)	143, 305, 390
BstACI	GRCGYC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	5 cut(s)	196, 300, 325, 600, 612
BstDEI	CTNAG	2 cut(s)	96, 567
BstDSI	CCRYGG	1 cut(s)	214
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	4 cut(s)	343, 409, 755, 826
BstFNI	CGCG	3 cut(s)	132, 211, 216
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	3 cut(s)	213, 531, 541
BstKTI	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
BstMAI	GTCTC	3 cut(s)	75, 243, 693
BstMBI	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
BstMCI	CGRYCG	2 cut(s)	130, 187
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 377, 506, 857, 866, 878, 920, 926
BstNI	CCWGG	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	12, 333
BstSFI	CTRYAG	2 cut(s)	431, 918
BstUI	CGCG	3 cut(s)	132, 211, 216
BstX2I	RGATCY	2 cut(s)	427, 477
BstYI	RGATCY	2 cut(s)	427, 477
Bsu15I	ATCGAT	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	343, 409, 755, 826
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	5 cut(s)	196, 300, 325, 600, 612
CfoI	GCGC	3 cut(s)	213, 531, 541
Cfr10I	RCCGGY	1 cut(s)	298
Cfr42I	CCGCGG	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	2 cut(s)	121, 247
Csp6I	GTAC	1 cut(s)	786
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	2 cut(s)	96, 567
DpnI	GATC	7 cut(s)	158, 186, 429, 479, 593, 719, 795
DpnII	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
Eam1104I	CTCTTC	3 cut(s)	143, 305, 390
EarI	CTCTTC	3 cut(s)	143, 305, 390
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	545, 783
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	673
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	298
FaiI	YATR	6 cut(s)	296, 644, 716, 771, 805, 807
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 498, 530
FaqI	GGGAC	2 cut(s)	146, 160
FatI	CATG	1 cut(s)	294
FokI	GGATG	4 cut(s)	350, 416, 742, 833
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	3 cut(s)	324, 683, 852
FspI	TGCGCA	1 cut(s)	540
GlaI	GCGC	3 cut(s)	212, 530, 540
HaeII	RGCGCY	1 cut(s)	532
HapII	CCGG	2 cut(s)	299, 335
HgaI	GACGC	2 cut(s)	121, 247
HhaI	GCGC	3 cut(s)	213, 531, 541
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	3 cut(s)	211, 529, 539
HinP1I	GCGC	3 cut(s)	211, 529, 539
HindIII	AAGCTT	2 cut(s)	596, 858
HinfI	GANTC	9 cut(s)	59, 76, 94, 251, 548, 686, 746, 824, 905
HpaII	CCGG	2 cut(s)	299, 335
HphI	GGTGA	4 cut(s)	71, 217, 748, 771
Hpy188I	TCNGA	4 cut(s)	75, 189, 475, 583
Hpy188III	TCNNGA	2 cut(s)	154, 246
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	252, 722
HpyCH4III	ACNGT	2 cut(s)	633, 790
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 377, 506, 857, 866, 878, 920, 926
HpyF3I	CTNAG	2 cut(s)	96, 567
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	3 cut(s)	211, 529, 539
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
LmnI	GCTCC	1 cut(s)	675
LpnPI	CCDG	9 cut(s)	8, 26, 104, 185, 208, 259, 262, 312, 348
LweI	GCATC	7 cut(s)	328, 394, 572, 574, 764, 822, 916
MaeI	CTAG	3 cut(s)	324, 683, 852
MaeIII	GTNAC	3 cut(s)	223, 627, 933
MalI	GATC	7 cut(s)	158, 186, 429, 479, 593, 719, 795
MboI	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
MboII	GAAGA	7 cut(s)	130, 322, 407, 776, 791, 914, 932
MflI	RGATCY	2 cut(s)	427, 477
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	440, 711
MlyI	GAGTC	5 cut(s)	70, 88, 245, 680, 833
MmeI	TCCRAC	6 cut(s)	87, 98, 381, 402, 426, 453
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	2 cut(s)	353, 410
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	2 cut(s)	216, 761
MspI	CCGG	2 cut(s)	299, 335
MspR9I	CCNGG	2 cut(s)	14, 335
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	132, 211, 216
MwoI	GCNNNNNNNGC	8 cut(s)	116, 377, 506, 857, 866, 878, 920, 926
NaeI	GCCGGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
NgoMIV	GCCGGC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	540
NspV	TTCGAA	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 165
PdiI	GCCGGC	1 cut(s)	300
PfeI	GAWTC	4 cut(s)	59, 548, 746, 905
PflFI	GACNNNGTC	3 cut(s)	97, 131, 149
PfoI	TCCNGGA	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	5 cut(s)	70, 88, 245, 680, 832
PpsI	GAGTC	5 cut(s)	70, 88, 245, 680, 832
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	435, 922
PsuI	RGATCY	2 cut(s)	427, 477
PsyI	GACNNNGTC	3 cut(s)	97, 131, 149
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
RseI	CAYNNNNRTG	1 cut(s)	713
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	353, 410
Sau3AI	GATC	7 cut(s)	156, 184, 427, 477, 591, 717, 793
SchI	GAGTC	5 cut(s)	70, 88, 245, 680, 833
ScrFI	CCNGG	2 cut(s)	14, 335
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	7 cut(s)	328, 394, 572, 574, 764, 822, 916
SfcI	CTRYAG	2 cut(s)	431, 918
Sfr303I	CCGCGG	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	726
SgrBI	CCGCGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	2 cut(s)	364, 515
SmoI	CTYRAG	2 cut(s)	364, 515
Sse9I	AATT	2 cut(s)	440, 711
SsiI	CCGC	7 cut(s)	108, 111, 130, 214, 216, 377, 759
SspMI	CTAG	3 cut(s)	324, 683, 852
StyD4I	CCNGG	2 cut(s)	12, 333
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	2 cut(s)	633, 790
TaqI	TCGA	4 cut(s)	126, 153, 183, 726
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	440, 711
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	3 cut(s)	113, 216, 380
TfiI	GAWTC	4 cut(s)	59, 548, 746, 905
Tru1I	TTAA	2 cut(s)	353, 410
Tru9I	TTAA	2 cut(s)	353, 410
TscAI	CASTG	1 cut(s)	638
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	471, 915
TspRI	CASTG	1 cut(s)	638
Tth111I	GACNNNGTC	3 cut(s)	97, 131, 149
XspI	CTAG	3 cut(s)	324, 683, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.